HHsearch alignment for GI: 254780831 and conserved domain: CHL00072
>CHL00072 chlL photochlorophyllide reductase subunit L.
Probab=99.94 E-value=3.4e-26 Score=194.55 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=144.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC--CCCCC----CC----CC-----CCCC
Q ss_conf 0102446665425789999898723577506988224678765310002456--31123----34----45-----7663
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK--VEISD----KK----FL-----KPKE 161 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~--~~~~~----~~----~i-----~p~~ 161 (341)
T Consensus 2 ~iaiy-GKGGIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT---~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G 77 (271)
T CHL00072 2 KIAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST---FTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKG 77 (271)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH---HHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 69997-8985448588999999999879979997899737777---4006998885999997537873216499998527
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCC-HHHHCC-CCCCEEEEECCCC
Q ss_conf 2230322333435522100013420247899986752-137775899745564442100-000002-2340267421443
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHL-TIAQKI-PLSGVVIVSTPQD 238 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~l-sl~~~~-~~~~~iiVttP~~ 238 (341)
T Consensus 78 ~~gi~cvEaGG-PepGvGCaGrgi--~~~i-~lL~~l~~~~d~D~V~yDvlgD---VVCGGFa~Pi~~Ad~~~iVts~e~ 150 (271)
T CHL00072 78 YGGVDCVEAGG-PPAGAGCGGYVV--GETV-KLLKELNAFYEYDVILFDVLGD---VVCGGFAAPLNYADYCIIITDNGF 150 (271)
T ss_pred CCCCEEEECCC-CCCCCCCCCCCC--HHHH-HHHHHCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCCEEEEEECCCH
T ss_conf 78846654389-998877788651--9999-9999737621388899944776---556545675000888999956708
Q ss_pred CHHHHHHHHHHHHHC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC
Q ss_conf 113456667776400----1221144554420245877886651247765899999847978988279989997502882
Q gi|254780831|r 239 LALIDVKRAISMYQK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341)
Q Consensus 239 ~s~~da~r~~~~~~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341)
T Consensus 151 malyaANnI~~~i~~~a~~~~~rl~GiI~N~~-------~~------~~~v~~fa~~~g~~~i~~iPrd~~V~~ae~~~~ 217 (271)
T CHL00072 151 DALFAANRIAASVREKARTHPLRLAGLVGNRT-------SK------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGK 217 (271)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-------CC------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCC
T ss_conf 89999999999999973046864443652268-------83------789999999739966985687116689997488
Q ss_pred CEEEECCCCHH----HHHHHHHHHHHHH
Q ss_conf 17997799989----9999999999999
Q gi|254780831|r 315 PIVVHNMNSAT----SEIYQEISDRIQQ 338 (341)
Q Consensus 315 P~v~~~p~s~~----a~~~~~iA~~i~~ 338 (341)
T Consensus 218 TviE~~p~s~~~~~~~~~Yr~LA~~I~~ 245 (271)
T CHL00072 218 TLFEMAESEPSLNYVCDFYLNIADQLLS 245 (271)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 2042289982478999999999999973