HHsearch alignment for GI: 254780831 and conserved domain: COG0552

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.49  E-value=0.00033  Score=48.04  Aligned_cols=162  Identities=23%  Similarity=0.312  Sum_probs=86.1

Q ss_pred             CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             42010244666542578999989872357750698822467876531000245631123344576632230322333435
Q gi|254780831|r   95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLV  174 (341)
Q Consensus        95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~  174 (341)
T Consensus       139 p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~-------------~w~er~gv~vI~~~--~  202 (340)
T COG0552         139 PFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE-------------VWGERLGVPVISGK--E  202 (340)
T ss_pred             CEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------------HHHHHHCCEEECCC--C
T ss_conf             6799999-348886371799999999978986999823347899999999-------------99999599278259--9


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CHHHHCC--------C-----CCCEEEEECCCCC
Q ss_conf             52210001342024789998675213777589974556444210--0000002--------2-----3402674214431
Q gi|254780831|r  175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH--LTIAQKI--------P-----LSGVVIVSTPQDL  239 (341)
Q Consensus       175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~--lsl~~~~--------~-----~~~~iiVttP~~~  239 (341)
T Consensus       203 G~DpAa-----VafDAi~~A----kar~~DvvliDTA---GRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl--DAt  268 (340)
T COG0552         203 GADPAA-----VAFDAIQAA----KARGIDVVLIDTA---GRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL--DAT  268 (340)
T ss_pred             CCCCHH-----HHHHHHHHH----HHCCCCEEEEECC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE--ECC
T ss_conf             998089-----999999999----9769999999675---54457366899999999984645689984289997--756


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE
Q ss_conf             1345666777640012211445544202458778866512477658999998479789
Q gi|254780831|r  240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL  297 (341)
Q Consensus       240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l  297 (341)
T Consensus       269 tGqnal~QAk~F~e-av~l~GiIlTK----lDgtAK------GG~il~I~~~l~~PI~  315 (340)
T COG0552         269 TGQNALSQAKIFNE-AVGLDGIILTK----LDGTAK------GGIILSIAYELGIPIK  315 (340)
T ss_pred             CCHHHHHHHHHHHH-HCCCCEEEEEE----CCCCCC------CCEEEEHHHHHCCCEE
T ss_conf             47568999999987-52886699970----246777------6243508888699979