HHsearch alignment for GI: 254780831 and conserved domain: COG3598

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=94.70  E-value=0.043  Score=33.93  Aligned_cols=112  Identities=21%  Similarity=0.320  Sum_probs=55.7

Q ss_pred             CCCCEECCCCCCCCCHHHHHHHHHHHHCCC----C------CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             542010244666542578999989872357----7------506988224678765310002456311233445766322
Q gi|254780831|r   94 VKKFVAVASGKGGVGKSTTVVNIACALKNK----G------KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENY  163 (341)
Q Consensus        94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~----G------~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~  163 (341)
T Consensus        87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~-----~v~a~mgLsPadvr  161 (402)
T COG3598          87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE-----PVRARMGLSPADVR  161 (402)
T ss_pred             HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH-----HHHHHCCCCHHHHH
T ss_conf             5170589844886237689999999998647774533558880799982268688999999-----99987099857632


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC
Q ss_conf             3032233343552210001342024789998675213777589974556--4442
Q gi|254780831|r  164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPP--GTGD  216 (341)
Q Consensus       164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~pp--G~gd  216 (341)
T Consensus       162 n~dltd~~Gaa~~~d~------l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~  210 (402)
T COG3598         162 NMDLTDVSGAADESDV------LSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGK  210 (402)
T ss_pred             HEECCCCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC
T ss_conf             2000024567872001------058999999999987478749973445422774