HHsearch alignment for GI: 254780831 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=94.70 E-value=0.043 Score=33.93 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=55.7
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC----C------CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 542010244666542578999989872357----7------506988224678765310002456311233445766322
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK----G------KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENY 163 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~----G------~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~ 163 (341)
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~-----~v~a~mgLsPadvr 161 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE-----PVRARMGLSPADVR 161 (402)
T ss_pred HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH-----HHHHHCCCCHHHHH
T ss_conf 5170589844886237689999999998647774533558880799982268688999999-----99987099857632
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC
Q ss_conf 3032233343552210001342024789998675213777589974556--4442
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPP--GTGD 216 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~pp--G~gd 216 (341)
T Consensus 162 n~dltd~~Gaa~~~d~------l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~ 210 (402)
T COG3598 162 NMDLTDVSGAADESDV------LSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGK 210 (402)
T ss_pred HEECCCCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC
T ss_conf 2000024567872001------058999999999987478749973445422774