HHsearch alignment for GI: 254780831 and conserved domain: COG4963
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].
Probab=99.70 E-value=4.3e-16 Score=127.25 Aligned_cols=223 Identities=21% Similarity=0.272 Sum_probs=154.5
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCC---CCCC
Q ss_conf 42010244666542578999989872357-750698822467876531000245631123---------3445---7663
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFL---KPKE 161 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i---~p~~ 161 (341)
T Consensus 104 ~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~ 183 (366)
T COG4963 104 GRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRL 183 (366)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 32899996058866689999999998641487389997688876123430787214589886097876078777898616
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 22303223334355221000134202478999867521377758997455644421000000022340267421443113
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
T Consensus 184 ~~~l~ll~a~--~~~~~~~----d~~~~~~~~Ll~-~~~~~~~~vV~Dlp~~~~~~--t~~vL~~Sd~iviv~e~sl~sl 254 (366)
T COG4963 184 ASGLKLLAAP--TELAKNY----DLKTGAVERLLD-LLRGSFDFVVVDLPNIWTDW--TRQVLSGSDEIVIVAEPSLASL 254 (366)
T ss_pred CCCCEEECCC--CCHHHHC----CCCCCHHHHHHH-HHHCCCCEEEECCCCCCCHH--HHHHHHCCCEEEEEECCCHHHH
T ss_conf 8876330377--4456521----533126999999-76402883897189766258--9999862884999963638989
Q ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH-HHHCCCCCEEE
Q ss_conf 4566677764001221--14455442024587788665124776589999984797898827998999-75028821799
Q gi|254780831|r 242 IDVKRAISMYQKMNIP--IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR-VLSDLGIPIVV 318 (341)
Q Consensus 242 ~da~r~~~~~~~~~~~--i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~-~a~~~g~P~v~ 318 (341)
T Consensus 255 R~ak~lld~l~~~r~~~~~p~lv~n~-----~~~~~~------~~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E 323 (366)
T COG4963 255 RNAKELLDELKRLRPNDPKPILVLNR-----VGVPKR------PEPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSE 323 (366)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEE-----CCCCCC------CCHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999999999737798895688652-----278889------9999998884884001366770544444206960222
Q ss_pred ECCCCHHHHHHHHHHHHHH
Q ss_conf 7799989999999999999
Q gi|254780831|r 319 HNMNSATSEIYQEISDRIQ 337 (341)
Q Consensus 319 ~~p~s~~a~~~~~iA~~i~ 337 (341)
T Consensus 324 ~~~~~~~~k~l~~la~~l~ 342 (366)
T COG4963 324 VDPGSPAAKALAQLAQSLG 342 (366)
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 3778758899999999853