HHsearch alignment for GI: 254780831 and conserved domain: COG4963

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].
Probab=99.70  E-value=4.3e-16  Score=127.25  Aligned_cols=223  Identities=21%  Similarity=0.272  Sum_probs=154.5

Q ss_pred             CCCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCC---CCCC
Q ss_conf             42010244666542578999989872357-750698822467876531000245631123---------3445---7663
Q gi|254780831|r   95 KKFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFL---KPKE  161 (341)
Q Consensus        95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i---~p~~  161 (341)
T Consensus       104 ~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~  183 (366)
T COG4963         104 GRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRL  183 (366)
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             32899996058866689999999998641487389997688876123430787214589886097876078777898616


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf             22303223334355221000134202478999867521377758997455644421000000022340267421443113
Q gi|254780831|r  162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL  241 (341)
Q Consensus       162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~  241 (341)
T Consensus       184 ~~~l~ll~a~--~~~~~~~----d~~~~~~~~Ll~-~~~~~~~~vV~Dlp~~~~~~--t~~vL~~Sd~iviv~e~sl~sl  254 (366)
T COG4963         184 ASGLKLLAAP--TELAKNY----DLKTGAVERLLD-LLRGSFDFVVVDLPNIWTDW--TRQVLSGSDEIVIVAEPSLASL  254 (366)
T ss_pred             CCCCEEECCC--CCHHHHC----CCCCCHHHHHHH-HHHCCCCEEEECCCCCCCHH--HHHHHHCCCEEEEEECCCHHHH
T ss_conf             8876330377--4456521----533126999999-76402883897189766258--9999862884999963638989


Q ss_pred             HHHHHHHHHHHCCCCC--HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH-HHHCCCCCEEE
Q ss_conf             4566677764001221--14455442024587788665124776589999984797898827998999-75028821799
Q gi|254780831|r  242 IDVKRAISMYQKMNIP--IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR-VLSDLGIPIVV  318 (341)
Q Consensus       242 ~da~r~~~~~~~~~~~--i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~-~a~~~g~P~v~  318 (341)
T Consensus       255 R~ak~lld~l~~~r~~~~~p~lv~n~-----~~~~~~------~~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E  323 (366)
T COG4963         255 RNAKELLDELKRLRPNDPKPILVLNR-----VGVPKR------PEPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSE  323 (366)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEE-----CCCCCC------CCHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCC
T ss_conf             99999999999737798895688652-----278889------9999998884884001366770544444206960222


Q ss_pred             ECCCCHHHHHHHHHHHHHH
Q ss_conf             7799989999999999999
Q gi|254780831|r  319 HNMNSATSEIYQEISDRIQ  337 (341)
Q Consensus       319 ~~p~s~~a~~~~~iA~~i~  337 (341)
T Consensus       324 ~~~~~~~~k~l~~la~~l~  342 (366)
T COG4963         324 VDPGSPAAKALAQLAQSLG  342 (366)
T ss_pred             CCCCCHHHHHHHHHHHHHC
T ss_conf             3778758899999999853