HHsearch alignment for GI: 254780831 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.01 E-value=0.036 Score=34.44 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=52.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999668784789999999999986067634235503222343332223465420102446665425789999898723
Q gi|254780831|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 42 ~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
T Consensus 69 ~~d~vv~SPGi~~~~p~~~~a~~--~~i~i~~eiel~~~~~~~~~-----~~~~k~IaVT---GTNGKTTTt~ll~~iL~ 138 (468)
T PRK04690 69 AFEVVVKSPGISPYRPEALAAAA--QGTPFIGGTALWFAEHAQPD-----GSVPGAVCVT---GTKGKSTTTALLAHLLR 138 (468)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH--CCCCEEEHHHHHHHHHHCCC-----CCCCCEEEEE---CCCCHHHHHHHHHHHHH
T ss_conf 48899989957986899999998--79948868999998753112-----5678789996---99858999999999998
Q ss_pred CCCCEEEEEECCCCCCC
Q ss_conf 57750698822467876
Q gi|254780831|r 122 NKGKNVAILDADVYGPS 138 (341)
Q Consensus 122 ~~G~~V~liDaDi~~ps 138 (341)
T Consensus 139 ~~g~~~~~-~GNIG~P~ 154 (468)
T PRK04690 139 AAGHRTAL-VGNIGQPL 154 (468)
T ss_pred HCCCCEEE-ECCCCHHH
T ss_conf 57998289-86776446