HHsearch alignment for GI: 254780831 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.35 E-value=8.3e-06 Score=58.70 Aligned_cols=169 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
T Consensus 76 ~vI~lv-G~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQL------k~~a~-------~l~v~~~-----~~ 136 (270)
T PRK06731 76 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL------QDYVK-------TIGFEVI-----AV 136 (270)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH------HHHHH-------HHCCCEE-----CC
T ss_conf 189998-88989889999999999986799089998388888899999------99999-------8199535-----45
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-----CHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 2210001342024789998675213777589974556444--210-----000000223402674214431134566677
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-----LTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-----lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
T Consensus 137 ~~~~------~~~~~~~~~~~~---~~~DvilIDTA-GR~~~d~~lm~el~~~~~~~~p~~~~Lvlda-s~~~~~~~~~~ 205 (270)
T PRK06731 137 RDEA------AMTRALTYFKEE---ARVDYILIDTA-GKNYRASETVEEMIETMGQVEPDYICLTLSA-SMKSKDMIEII 205 (270)
T ss_pred CCHH------HHHHHHHHHHHH---CCCCEEEEECC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHH
T ss_conf 8878------999999999997---69999999799-9871469999999998606389879999868-77769999999
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE--E---CCCCHHH
Q ss_conf 76400122114455442024587788665124776589999984797898--8---2799899
Q gi|254780831|r 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLE--S---VPFDMDV 306 (341)
Q Consensus 249 ~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg--~---IP~d~~i 306 (341)
T Consensus 206 ~~f~~--~~i~gvIlTK-------lD~ta~---gG~als~~~~~~~PI~fig~Ge~VpeDi~~ 256 (270)
T PRK06731 206 TNFKD--IHIDGIVFTK-------FDETAS---SGELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred HHHCC--CCCCEEEEEC-------CCCCCC---CCHHHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf 98077--9998899965-------358997---729999999988597999459997021413