HHsearch alignment for GI: 254780831 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.05 E-value=4.6e-05 Score=53.74 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=89.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCEEECCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445--7663223032233343
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL--KPKENYGIKIMSMASL 173 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i--~p~~~~gi~~~s~g~l 173 (341)
T Consensus 242 q~IALV-GPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGA------VEQLKTY--AeIMgVPV~-----VV----- 302 (436)
T PRK11889 242 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT------VQQLQDY--VKTIGFEVI-----AV----- 302 (436)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH------HHHHHHH--HHHHCCCEE-----EE-----
T ss_conf 179998-9999888999999999986169808999806634769------9999999--998499439-----96-----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 552210001342024789998675213777589974556444--21-00----000002234026742144311345666
Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLSGVVIVSTPQDLALIDVKR 246 (341)
Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~~~iiVttP~~~s~~da~r 246 (341)
T Consensus 303 ~dp~--------eL~~AL~~l-kdk--a~~DLILIDTA-GRS~RD~~~I~EL~~~l~~~~p~ev~LVLS-ATTK~~DL~e 369 (436)
T PRK11889 303 RDEA--------AMTRALTYF-KEE--ARVDYILIDTA-GKNYRASETVEEMIETMGQVEPDYICLTLS-ASMKSKDMIE 369 (436)
T ss_pred CCHH--------HHHHHHHHH-HHC--CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHHHHH
T ss_conf 8889--------999999987-633--68888999298-988468999999999985127771699997-8899899999
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHHH
Q ss_conf 77764001221144554420245877886651247765899999847978988-----279989997
Q gi|254780831|r 247 AISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVRV 308 (341)
Q Consensus 247 ~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~~ 308 (341)
T Consensus 370 Ii~rF~~l~i--dglIfT-------KLDET~---SlG~ILNv~~~s~LPIsYvTdGQ~VPEDIevA~ 424 (436)
T PRK11889 370 IITNFKDIHI--DGIVFT-------KFDETA---SSGELLKIPAVSSAPIVLMTDGQDVKKNIHIAT 424 (436)
T ss_pred HHHHHCCCCC--CEEEEE-------ECCCCC---CCHHHHHHHHHHCCCEEEECCCCCCCCCHHHCC
T ss_conf 9997257998--828997-------132568---703788899883998799789985875300069