HHsearch alignment for GI: 254780831 and conserved domain: PRK13232

>PRK13232 nifH nitrogenase reductase; Reviewed.
Probab=100.00  E-value=2.6e-33  Score=242.01  Aligned_cols=228  Identities=21%  Similarity=0.248  Sum_probs=163.8

Q ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------CCCCCCCCCC
Q ss_conf             20102446665425789999898723577506988224678765310002456311233-----------4457663223
Q gi|254780831|r   96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------KFLKPKENYG  164 (341)
Q Consensus        96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------~~i~p~~~~g  164 (341)
T Consensus         2 ~~iaiy-GKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~g   80 (273)
T PRK13232          2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGD   80 (273)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf             579997-9986658878999999999779969998978844277788589988879999986185656366615428897


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCCCCH
Q ss_conf             03223334355221000134202478999867521377758997455644421000-00---002234026742144311
Q gi|254780831|r  165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQDLA  240 (341)
Q Consensus       165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~~~s  240 (341)
T Consensus        81 v~cve~gg-p~~g~gcagrgii~~~~lle~l~-~~~~~~Dyvl~Dvlgd---vvcggfa~P~~~~~A~evlIVts~E~~s  155 (273)
T PRK13232         81 IKCVESGG-PEPGVGCAGRGIITSIGLLENLG-AYTDDLDYVFYDVLGD---VVCGGFAMPIREGKAKEIYIVASGELMA  155 (273)
T ss_pred             EEEEECCC-CCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf             38986899-87676545304788888999708-3214798899941473---3236531442016576899980760888


Q ss_pred             HHHHH---HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf             34566---677764001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r  241 LIDVK---RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV  317 (341)
Q Consensus       241 ~~da~---r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v  317 (341)
T Consensus       156 lyaannI~k~i~~~~~~~~rl~GiI~n~r~----~~~------~~e~v~~fa~~~g~~vi~~IPr~~~v~~A~~~g~tvi  225 (273)
T PRK13232        156 IYAANNICKGLAKFAKGGARLGGIICNSRN----VDG------ERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVI  225 (273)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEECCC----CCC------HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEE
T ss_conf             999999999999996218850148850557----763------8999999999719966997899778876487298358


Q ss_pred             EECCCCHHHHHHHHHHHHHHHH
Q ss_conf             9779998999999999999998
Q gi|254780831|r  318 VHNMNSATSEIYQEISDRIQQF  339 (341)
Q Consensus       318 ~~~p~s~~a~~~~~iA~~i~~~  339 (341)
T Consensus       226 e~~P~S~~A~aY~~LA~~I~~~  247 (273)
T PRK13232        226 DFDPESNQAKEYLTLAHNVQNN  247 (273)
T ss_pred             EECCCCHHHHHHHHHHHHHHHC
T ss_conf             9799997999999999999858