HHsearch alignment for GI: 254780831 and conserved domain: PRK13232
>PRK13232 nifH nitrogenase reductase; Reviewed.
Probab=100.00 E-value=2.6e-33 Score=242.01 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=163.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------CCCCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233-----------4457663223
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------KFLKPKENYG 164 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------~~i~p~~~~g 164 (341)
T Consensus 2 ~~iaiy-GKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~g 80 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGD 80 (273)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf 579997-9986658878999999999779969998978844277788589988879999986185656366615428897
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCCCCH
Q ss_conf 03223334355221000134202478999867521377758997455644421000-00---002234026742144311
Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQDLA 240 (341)
Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~~~s 240 (341)
T Consensus 81 v~cve~gg-p~~g~gcagrgii~~~~lle~l~-~~~~~~Dyvl~Dvlgd---vvcggfa~P~~~~~A~evlIVts~E~~s 155 (273)
T PRK13232 81 IKCVESGG-PEPGVGCAGRGIITSIGLLENLG-AYTDDLDYVFYDVLGD---VVCGGFAMPIREGKAKEIYIVASGELMA 155 (273)
T ss_pred EEEEECCC-CCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 38986899-87676545304788888999708-3214798899941473---3236531442016576899980760888
Q ss_pred HHHHH---HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 34566---677764001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 241 LIDVK---RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 241 ~~da~---r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
T Consensus 156 lyaannI~k~i~~~~~~~~rl~GiI~n~r~----~~~------~~e~v~~fa~~~g~~vi~~IPr~~~v~~A~~~g~tvi 225 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRN----VDG------ERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVI 225 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCC----CCC------HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEE
T ss_conf 999999999999996218850148850557----763------8999999999719966997899778876487298358
Q ss_pred EECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9779998999999999999998
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
T Consensus 226 e~~P~S~~A~aY~~LA~~I~~~ 247 (273)
T PRK13232 226 DFDPESNQAKEYLTLAHNVQNN 247 (273)
T ss_pred EECCCCHHHHHHHHHHHHHHHC
T ss_conf 9799997999999999999858