HHsearch alignment for GI: 254780831 and conserved domain: PRK13234
>PRK13234 nifH nitrogenase reductase; Reviewed.
Probab=99.94 E-value=1.1e-25 Score=191.15 Aligned_cols=224 Identities=22% Similarity=0.285 Sum_probs=154.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----CCCCC--------CCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233----44576--------6322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----KFLKP--------KENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~~i~p--------~~~~ 163 (341)
T Consensus 5 r~IAiY-GKGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293)
T PRK13234 5 RQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf 579997-7984458778999999999779969997489831656876289999708899876498121538789743779
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECCC
Q ss_conf 30322333435522100013420247899986752-1377758997455644421000000022-----34026742144
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTPQ 237 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP~ 237 (341)
T Consensus 84 gI~CVEsGG-PePGvGCAGRGI--itai~-~Le~lga~ed~D~V~yDV---LGDVVCGG-FAmPir~g~A~evyIVtSge 155 (293)
T PRK13234 84 GIKCVESGG-PEPGVGCAGRGV--ITSIN-FLEENGAYDDVDYVSYDV---LGDVVCGG-FAMPIRENKAQEIYIVMSGE 155 (293)
T ss_pred CEEEEECCC-CCCCCCCCCCCH--HHHHH-HHHHCCCCCCCCEEEEEC---CCCCCCCC-CCCCCCCCCCCEEEEEECCC
T ss_conf 848976899-899888777131--46788-887718765799999956---77665147-55665458876899994671
Q ss_pred CCHHHHH---HHHHHHH-HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCC
Q ss_conf 3113456---6677764-00122114455442024587788665124776589999984797898827998999750288
Q gi|254780831|r 238 DLALIDV---KRAISMY-QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLG 313 (341)
Q Consensus 238 ~~s~~da---~r~~~~~-~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g 313 (341)
T Consensus 156 ~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~----r~~~~------e~~~v~~fa~~~gt~ii~~IPrs~~v~~aE~~~ 225 (293)
T PRK13234 156 MMALYAANNIAKGILKYANSGGVRLGGLICNE----RQTDR------ELELAEALAKRLGSKLIHFVPRDNIVQHAELRR 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCC------HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC
T ss_conf 87999999999999998632696246899717----89853------799999999984993799779968899999739
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2179977999899999999999999
Q gi|254780831|r 314 IPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 314 ~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
T Consensus 226 ~TviE~~P~s~~A~~Yr~LA~~I~~ 250 (293)
T PRK13234 226 MTVIEYAPDSKQAGEYRALAEKIHA 250 (293)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 7778968898799999999999984