HHsearch alignment for GI: 254780831 and conserved domain: PRK13234

>PRK13234 nifH nitrogenase reductase; Reviewed.
Probab=99.94  E-value=1.1e-25  Score=191.15  Aligned_cols=224  Identities=22%  Similarity=0.285  Sum_probs=154.8

Q ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----CCCCC--------CCCC
Q ss_conf             20102446665425789999898723577506988224678765310002456311233----44576--------6322
Q gi|254780831|r   96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----KFLKP--------KENY  163 (341)
Q Consensus        96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~~i~p--------~~~~  163 (341)
T Consensus         5 r~IAiY-GKGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~   83 (293)
T PRK13234          5 RQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK   83 (293)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf             579997-7984458778999999999779969997489831656876289999708899876498121538789743779


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECCC
Q ss_conf             30322333435522100013420247899986752-1377758997455644421000000022-----34026742144
Q gi|254780831|r  164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTPQ  237 (341)
Q Consensus       164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP~  237 (341)
T Consensus        84 gI~CVEsGG-PePGvGCAGRGI--itai~-~Le~lga~ed~D~V~yDV---LGDVVCGG-FAmPir~g~A~evyIVtSge  155 (293)
T PRK13234         84 GIKCVESGG-PEPGVGCAGRGV--ITSIN-FLEENGAYDDVDYVSYDV---LGDVVCGG-FAMPIRENKAQEIYIVMSGE  155 (293)
T ss_pred             CEEEEECCC-CCCCCCCCCCCH--HHHHH-HHHHCCCCCCCCEEEEEC---CCCCCCCC-CCCCCCCCCCCEEEEEECCC
T ss_conf             848976899-899888777131--46788-887718765799999956---77665147-55665458876899994671


Q ss_pred             CCHHHHH---HHHHHHH-HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCC
Q ss_conf             3113456---6677764-00122114455442024587788665124776589999984797898827998999750288
Q gi|254780831|r  238 DLALIDV---KRAISMY-QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLG  313 (341)
Q Consensus       238 ~~s~~da---~r~~~~~-~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g  313 (341)
T Consensus       156 ~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~----r~~~~------e~~~v~~fa~~~gt~ii~~IPrs~~v~~aE~~~  225 (293)
T PRK13234        156 MMALYAANNIAKGILKYANSGGVRLGGLICNE----RQTDR------ELELAEALAKRLGSKLIHFVPRDNIVQHAELRR  225 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCC------HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC
T ss_conf             87999999999999998632696246899717----89853------799999999984993799779968899999739


Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             2179977999899999999999999
Q gi|254780831|r  314 IPIVVHNMNSATSEIYQEISDRIQQ  338 (341)
Q Consensus       314 ~P~v~~~p~s~~a~~~~~iA~~i~~  338 (341)
T Consensus       226 ~TviE~~P~s~~A~~Yr~LA~~I~~  250 (293)
T PRK13234        226 MTVIEYAPDSKQAGEYRALAEKIHA  250 (293)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             7778968898799999999999984