HHsearch alignment for GI: 254780831 and conserved domain: PRK13869

>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=99.90  E-value=1e-23  Score=178.09  Aligned_cols=229  Identities=18%  Similarity=0.235  Sum_probs=140.7

Q ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----------------CCCCC
Q ss_conf             2010244666542578999989872357750698822467876531000245631123-----------------34457
Q gi|254780831|r   96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----------------KKFLK  158 (341)
Q Consensus        96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----------------~~~i~  158 (341)
T Consensus       122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQg-nlS~~lG~~pe~d~~~~~tl~~~l~~d~~~~~l~~~I~  200 (405)
T PRK13869        122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIR  200 (405)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCC
T ss_conf             28999788877659999999999999779988999645617-88898089854566531359999844545587999521


Q ss_pred             CCCCCCEEECCCCC-CCCCC--CCC--C---CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE
Q ss_conf             66322303223334-35522--100--0---1342024789998675213777589974556444210000000223402
Q gi|254780831|r  159 PKENYGIKIMSMAS-LVDEN--VAM--I---WRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV  230 (341)
Q Consensus       159 p~~~~gi~~~s~g~-l~~~~--~~~--~---~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~  230 (341)
T Consensus       201 ~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~~v-~d~YDvIiIDcPPsLg--~lT~nAL~AAd~v  277 (405)
T PRK13869        201 PTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFDEV-ADDYDVVVIDCPPQLG--FLTLSGLCAATSM  277 (405)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCCHH--HHHHHHHHHHCEE
T ss_conf             679999689589889999888759998743315568999999999864-4129989995998265--9999999982863


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHCC-----------CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-E
Q ss_conf             674214431134566677764001-----------2211445544202458778866512477658999998479789-8
Q gi|254780831|r  231 VIVSTPQDLALIDVKRAISMYQKM-----------NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-E  298 (341)
Q Consensus       231 iiVttP~~~s~~da~r~~~~~~~~-----------~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g  298 (341)
T Consensus       278 lIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr-------~d~~~~~-~~~v~~~lr~~fg~~Vl~~  349 (405)
T PRK13869        278 VITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTR-------YEPQDAP-QTKVTALLRNMFEDHVLTN  349 (405)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-------ECCCCCH-HHHHHHHHHHHHHHHHHHC
T ss_conf             8648960878999999999999999999970788785404563140-------6899825-9999999999987888608


Q ss_pred             ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             82799899975028821799779998999999999999
Q gi|254780831|r  299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI  336 (341)
Q Consensus       299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i  336 (341)
T Consensus       350 ~i~~S~ais~A~~~~~TvyE~~~~~~~r~Ty~Ra~e~~  387 (405)
T PRK13869        350 PMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESL  387 (405)
T ss_pred             CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             07377999986874496287650527889999999999