HHsearch alignment for GI: 254780831 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=99.90 E-value=1e-23 Score=178.09 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=140.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----------------CCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----------------34457
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----------------KKFLK 158 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----------------~~~i~ 158 (341)
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQg-nlS~~lG~~pe~d~~~~~tl~~~l~~d~~~~~l~~~I~ 200 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIR 200 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 28999788877659999999999999779988999645617-88898089854566531359999844545587999521
Q ss_pred CCCCCCEEECCCCC-CCCCC--CCC--C---CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE
Q ss_conf 66322303223334-35522--100--0---1342024789998675213777589974556444210000000223402
Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDEN--VAM--I---WRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV 230 (341)
Q Consensus 159 p~~~~gi~~~s~g~-l~~~~--~~~--~---~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ 230 (341)
T Consensus 201 ~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~~v-~d~YDvIiIDcPPsLg--~lT~nAL~AAd~v 277 (405)
T PRK13869 201 PTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFDEV-ADDYDVVVIDCPPQLG--FLTLSGLCAATSM 277 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCCHH--HHHHHHHHHHCEE
T ss_conf 679999689589889999888759998743315568999999999864-4129989995998265--9999999982863
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCC-----------CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-E
Q ss_conf 674214431134566677764001-----------2211445544202458778866512477658999998479789-8
Q gi|254780831|r 231 VIVSTPQDLALIDVKRAISMYQKM-----------NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-E 298 (341)
Q Consensus 231 iiVttP~~~s~~da~r~~~~~~~~-----------~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g 298 (341)
T Consensus 278 lIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr-------~d~~~~~-~~~v~~~lr~~fg~~Vl~~ 349 (405)
T PRK13869 278 VITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTR-------YEPQDAP-QTKVTALLRNMFEDHVLTN 349 (405)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-------ECCCCCH-HHHHHHHHHHHHHHHHHHC
T ss_conf 8648960878999999999999999999970788785404563140-------6899825-9999999999987888608
Q ss_pred ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 82799899975028821799779998999999999999
Q gi|254780831|r 299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336 (341)
Q Consensus 299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i 336 (341)
T Consensus 350 ~i~~S~ais~A~~~~~TvyE~~~~~~~r~Ty~Ra~e~~ 387 (405)
T PRK13869 350 PMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESL 387 (405)
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 07377999986874496287650527889999999999