HHsearch alignment for GI: 254780831 and conserved domain: TIGR00313
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=98.22 E-value=8e-06 Score=58.80 Aligned_cols=186 Identities=20% Similarity=0.342 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC------------CCCCCCCCCCCCC-----CCCEEECC
Q ss_conf 425789999898723577506988224678765310002456------------3112334457663-----22303223
Q gi|254780831|r 107 VGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK------------VEISDKKFLKPKE-----NYGIKIMS 169 (341)
Q Consensus 107 VGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~------------~~~~~~~~i~p~~-----~~gi~~~s 169 (341)
T Consensus 10 AGKs~l~AaLCRiL~rrGy~VAPFKsQ--NMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgdf~SQviv 87 (502)
T TIGR00313 10 AGKSLLTAALCRILARRGYRVAPFKSQ--NMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGDFTSQVIV 87 (502)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 028999999999985278812785011--010133311378755137689998638788623487101678884667898
Q ss_pred CCCCCCCCCCCCCCCCC---HHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCC--------CHHHHCCCCCCEEEEEC
Q ss_conf 33435522100013420---24789998675213777589974556444---210--------00000022340267421
Q gi|254780831|r 170 MASLVDENVAMIWRGPM---VQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAH--------LTIAQKIPLSGVVIVST 235 (341)
Q Consensus 170 ~g~l~~~~~~~~~rg~~---~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~--------lsl~~~~~~~~~iiVtt 235 (341)
T Consensus 88 ~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle-~L~~~Yd~vv~E---GAGS~AEINL~~rDLaN~~iA~~~~-A~~iLvAD 162 (502)
T TIGR00313 88 HGRAVGDMNAQEYYKNKVDFLLKAIKESLE-ILAEEYDLVVIE---GAGSPAEINLKERDLANMRIAELAD-ADVILVAD 162 (502)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEE---CCCCCCCCCCCCCCCHHHHHHHHCC-CCEEEEEE
T ss_conf 411246676156777999999999999998-752028889982---6887100053315722478986439-76799975
Q ss_pred CCCC-HHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 4431-134566677764001-22114455442024587788665124776589999984797898827998999
Q gi|254780831|r 236 PQDL-ALIDVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341)
Q Consensus 236 P~~~-s~~da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341)
T Consensus 163 IDRGGVFAsi~GTl~LL~~~~r~liKG~vINk--f----RG~~~vL--~~GI~~lEelTGiPVLGv~PY~~~l~ 228 (502)
T TIGR00313 163 IDRGGVFASIYGTLKLLPEEERKLIKGIVINK--F----RGNVDVL--ESGIEKLEELTGIPVLGVLPYDENLK 228 (502)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECEEEECC--C----CCCHHHH--HHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 07774324337466618834575003068835--4----6872443--44568998854842344650125776