HHsearch alignment for GI: 254780831 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.67 E-value=0.0031 Score=41.51 Aligned_cols=158 Identities=16% Similarity=0.287 Sum_probs=84.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
T Consensus 12 G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTE-GGLS~ER~~q~~~~~~~D~e~~~~-----~~iv~~~~~f~e 85 (223)
T TIGR02237 12 GIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTE-GGLSPERFKQIAEDRALDPERVLS-----NVIVFEVFDFDE 85 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHCCCCCHHHHHC-----CEEEECCCCHHH
T ss_conf 35889875899867899999999998618958999628-983289999986305889888841-----535523535678
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCC-CCEEEEECCCCCHHHHHHH----HHHH
Q ss_conf 2210001342024789998675213777589974556444210000000223-4026742144311345666----7776
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPL-SGVVIVSTPQDLALIDVKR----AISM 250 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~-~~~iiVttP~~~s~~da~r----~~~~ 250 (341)
T Consensus 86 Q~~ai-------~~-~~~~~~~~-G~~~~LvVvDs~t~-------~Y-Rle~~~d~----nk~~~~~~~l~~Ql~~Ll~l 144 (223)
T TIGR02237 86 QEVAI-------QK-TSKLIDRD-GDKADLVVVDSFTA-------LY-RLERSDDR----NKQISLNRELARQLTLLLSL 144 (223)
T ss_pred HHHHH-------HH-HHHHHHCC-CCEEEEEEEECCHH-------HH-HHCCCCCC----HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999-------99-99998606-88331488815334-------54-20257860----25679999999999999999
Q ss_pred HHCCCCCHHHHHHHHCCCCCCCC-CCEEECCCC
Q ss_conf 40012211445544202458778-866512477
Q gi|254780831|r 251 YQKMNIPIIGMIENMSYFLASDT-GKKYDLFGN 282 (341)
Q Consensus 251 ~~~~~~~i~GiV~NMs~~~~~~~-~~~~~~fg~ 282 (341)
T Consensus 145 Ark~~~AV--viTNQvy~d~~~gG~~~~~P~GG 175 (223)
T TIGR02237 145 ARKKDLAV--VITNQVYTDVNNGGSETLRPLGG 175 (223)
T ss_pred HHHCCCCE--EEEEEEEEEECCCCCCEEEECCC
T ss_conf 87649978--99711588637797320100331