HHsearch alignment for GI: 254780831 and conserved domain: TIGR03453
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.90 E-value=1e-23 Score=178.10 Aligned_cols=229 Identities=18% Similarity=0.257 Sum_probs=142.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------------CCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233-----------------4457
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------------KFLK 158 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------------~~i~ 158 (341)
T Consensus 105 ~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvIDLDPQa-nlT~~~G~~pe~d~~~~~tl~~~l~~d~~~~~l~~~i~ 183 (387)
T TIGR03453 105 QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAIDLDPQA-SLSALFGFQPEFDVGENETLYGAIRYDDERRPLSEIIR 183 (387)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf 08999788876569999999999999779988999537016-78875289843466756429999844556687999611
Q ss_pred CCCCCCEEECCCCC-CCCC--CCCC-CCCC----CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE
Q ss_conf 66322303223334-3552--2100-0134----2024789998675213777589974556444210000000223402
Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDE--NVAM-IWRG----PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV 230 (341)
Q Consensus 159 p~~~~gi~~~s~g~-l~~~--~~~~-~~rg----~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ 230 (341)
T Consensus 184 ~T~~~~LdliPa~~~L~~~E~~~~~~l~~~~~~~~~f~~rL~~aL~~v-~d~YD~IlIDcPPsLg--~lT~nAL~AAd~v 260 (387)
T TIGR03453 184 KTYFPGLDLIPGNLELMEFEHETPRALSRGAGGDTIFFARVGEALAEV-EDDYDVVVIDCPPQLG--FLTLSALCAATAV 260 (387)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCC--HHHHHHHHHCCEE
T ss_conf 479999689659889999889889999743110026999999999976-6029999995898513--9999999981940
Q ss_pred EEEECCCCCHHHHHHHHHHHH-------HC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC-EEE
Q ss_conf 674214431134566677764-------00----122114455442024587788665124776589999984797-898
Q gi|254780831|r 231 VIVSTPQDLALIDVKRAISMY-------QK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP-FLE 298 (341)
Q Consensus 231 iiVttP~~~s~~da~r~~~~~-------~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~-~lg 298 (341)
T Consensus 261 lIPv~p~~ld~~s~~qfl~~~~~l~~~i~~~g~~~~~d~~~~LlT~--~d-----~~~~~-~~~v~~~~r~~fg~~vl~~ 332 (387)
T TIGR03453 261 LITVHPQMLDVMSMSQFLLMTGDLLGVVRDAGGNLSYDWMRYLVTR--YE-----PNDGP-QAQMVAFMRSLFGEHVLTN 332 (387)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--EC-----CCCCH-HHHHHHHHHHHHHHHHHCC
T ss_conf 8788871777999999999999999999971677676405776451--78-----99846-9999999999850654236
Q ss_pred ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 82799899975028821799779998999999999999
Q gi|254780831|r 299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336 (341)
Q Consensus 299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i 336 (341)
T Consensus 333 ~i~~S~ai~~A~~~~~TiyE~~~~~~~r~ty~Ra~e~~ 370 (387)
T TIGR03453 333 PMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESL 370 (387)
T ss_pred EEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 20167999863763793598774658989999999999