HHsearch alignment for GI: 254780831 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.57 E-value=9.6e-05 Score=51.60 Aligned_cols=42 Identities=33% Similarity=0.538 Sum_probs=34.9
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCC
Q ss_conf 542010244666542578999989872357--7506988224678
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYG 136 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~ 136 (341)
T Consensus 193 ~~~vi~lv-GPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyR 236 (282)
T TIGR03499 193 QGGVIALV-GPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYR 236 (282)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 67279997-788875788999999999997389967999807776