HHsearch alignment for GI: 254780831 and conserved domain: cd01121

>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.90  E-value=0.1  Score=31.45  Aligned_cols=36  Identities=31%  Similarity=0.579  Sum_probs=31.6

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             102446665425789999898723577506988224
Q gi|254780831|r   98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD  133 (341)
Q Consensus        98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD  133 (341)
T Consensus        84 vvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGE  119 (372)
T cd01121          84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE  119 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             799825998868899999999998639938998245