HHsearch alignment for GI: 254780831 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.90 E-value=0.1 Score=31.45 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=31.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
T Consensus 84 vvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGE 119 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 799825998868899999999998639938998245