HHsearch alignment for GI: 254780831 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=92.02  E-value=0.15  Score=30.41  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             446665425789999898723577506988224
Q gi|254780831|r  101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDAD  133 (341)
Q Consensus       101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD  133 (341)
T Consensus         4 i~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~e   36 (187)
T cd01124           4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             876899999999999999998769978999950