HHsearch alignment for GI: 254780831 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.95 E-value=2.4e-28 Score=208.88 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-------CCCCCCEECCCCCCCCCCCCC---CCCCCCCCEEE
Q ss_conf 10244666542578999989872357750698822467-------876531000245631123344---57663223032
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY-------GPSIPKLLKISGKVEISDKKF---LKPKENYGIKI 167 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~-------~ps~~~~lg~~~~~~~~~~~~---i~p~~~~gi~~ 167 (341)
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~-~e~~~~~~~~~v~~~~~~~~~~ 79 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVED-PEIAPNLYREEVDATRRVERAW 79 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989978996619999999999999689949999589876653234798651358887-6667999987501666533311
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 23334355221000134202478999867521377758997455644421----00000002234026742144311345
Q gi|254780831|r 168 MSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA----HLTIAQKIPLSGVVIVSTPQDLALID 243 (341)
Q Consensus 168 ~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~----~lsl~~~~~~~~~iiVttP~~~s~~d 243 (341)
T Consensus 80 ~~~~-~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpP-TGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~~~e 157 (217)
T cd02035 80 GGEG-GLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAP-TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYE 157 (217)
T ss_pred HHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH
T ss_conf 0011-4567776159978999999999999854899889982898-5569998678872488876799995776217999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 666777640012211445544202
Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSY 267 (341)
Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~ 267 (341)
T Consensus 158 t~r~~~~L~~~gi~v~~vVvN~v~ 181 (217)
T cd02035 158 TERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 999999999779988989895882