HHsearch alignment for GI: 254780831 and conserved domain: cd02035

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.95  E-value=2.4e-28  Score=208.88  Aligned_cols=167  Identities=22%  Similarity=0.321  Sum_probs=105.2

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-------CCCCCCEECCCCCCCCCCCCC---CCCCCCCCEEE
Q ss_conf             10244666542578999989872357750698822467-------876531000245631123344---57663223032
Q gi|254780831|r   98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY-------GPSIPKLLKISGKVEISDKKF---LKPKENYGIKI  167 (341)
Q Consensus        98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~-------~ps~~~~lg~~~~~~~~~~~~---i~p~~~~gi~~  167 (341)
T Consensus         1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~-~e~~~~~~~~~v~~~~~~~~~~   79 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVED-PEIAPNLYREEVDATRRVERAW   79 (217)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             989978996619999999999999689949999589876653234798651358887-6667999987501666533311


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf             23334355221000134202478999867521377758997455644421----00000002234026742144311345
Q gi|254780831|r  168 MSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA----HLTIAQKIPLSGVVIVSTPQDLALID  243 (341)
Q Consensus       168 ~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~----~lsl~~~~~~~~~iiVttP~~~s~~d  243 (341)
T Consensus        80 ~~~~-~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpP-TGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~~~e  157 (217)
T cd02035          80 GGEG-GLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAP-TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYE  157 (217)
T ss_pred             HHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH
T ss_conf             0011-4567776159978999999999999854899889982898-5569998678872488876799995776217999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf             666777640012211445544202
Q gi|254780831|r  244 VKRAISMYQKMNIPIIGMIENMSY  267 (341)
Q Consensus       244 a~r~~~~~~~~~~~i~GiV~NMs~  267 (341)
T Consensus       158 t~r~~~~L~~~gi~v~~vVvN~v~  181 (217)
T cd02035         158 TERAITELALYGIPVDAVVVNRVL  181 (217)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             999999999779988989895882