Query gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 341
No_of_seqs 203 out of 2900
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 23:36:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780831.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 putative ATPase; Prov 100.0 0 0 695.8 30.0 338 3-340 11-353 (369)
2 KOG3022 consensus 100.0 0 0 549.3 18.0 290 52-341 2-296 (300)
3 cd02037 MRP-like MRP (Multiple 100.0 0 0 415.1 13.2 169 97-304 1-169 (169)
4 COG0489 Mrp ATPases involved i 100.0 0 0 378.3 11.1 243 56-309 16-264 (265)
5 CHL00175 minD septum-site dete 100.0 0 0 359.1 17.6 237 89-340 7-254 (279)
6 TIGR01969 minD_arch cell divis 100.0 0 0 353.1 12.1 223 96-338 1-233 (258)
7 pfam00142 Fer4_NifH 4Fe-4S iro 100.0 1.4E-45 0 322.7 16.1 229 96-339 1-247 (269)
8 PRK10818 cell division inhibit 100.0 7E-45 0 319.2 16.0 230 94-339 1-249 (270)
9 TIGR01968 minD_bact septum sit 100.0 8.1E-44 0 312.0 10.1 227 96-337 2-247 (272)
10 cd02040 NifH NifH gene encodes 100.0 6.6E-42 0 299.3 15.1 228 96-339 2-248 (270)
11 cd03110 Fer4_NifH_child This p 100.0 2.2E-39 5.6E-44 282.5 10.1 178 98-301 2-179 (179)
12 cd02036 MinD Bacterial cell di 100.0 1.9E-38 4.9E-43 276.2 11.8 179 97-329 1-179 (179)
13 TIGR03371 cellulose_yhjQ cellu 100.0 3.6E-36 9.2E-41 261.0 15.6 232 96-340 2-245 (246)
14 COG0455 flhG Antiactivator of 100.0 4.4E-36 1.1E-40 260.4 15.0 228 95-339 2-241 (262)
15 PRK13231 nitrogenase reductase 100.0 4.5E-35 1.1E-39 253.7 16.1 229 95-339 2-241 (264)
16 PRK13230 nitrogenase reductase 100.0 4.8E-35 1.2E-39 253.5 14.4 231 96-338 2-259 (292)
17 COG2894 MinD Septum formation 100.0 2.1E-34 5.4E-39 249.3 11.4 227 95-337 2-246 (272)
18 PRK13232 nifH nitrogenase redu 100.0 2.6E-33 6.6E-38 242.0 14.4 228 96-339 2-247 (273)
19 COG1149 MinD superfamily P-loo 100.0 5.9E-32 1.5E-36 232.9 14.2 225 96-340 2-284 (284)
20 PRK13233 nifH nitrogenase redu 100.0 1E-31 2.6E-36 231.3 14.6 227 94-338 1-249 (275)
21 PRK13235 nifH nitrogenase redu 100.0 4.8E-31 1.2E-35 226.9 14.1 227 96-338 2-248 (274)
22 pfam06564 YhjQ YhjQ protein. T 100.0 2E-31 5E-36 229.5 11.3 227 96-340 2-239 (244)
23 cd02117 NifH_like This family 100.0 1.8E-31 4.5E-36 229.8 10.9 190 96-303 1-212 (212)
24 pfam01656 CbiA CobQ/CobB/MinD/ 100.0 3.4E-31 8.6E-36 227.9 9.4 194 98-308 1-212 (212)
25 cd02032 Bchl_like This family 100.0 7.9E-30 2E-34 218.8 15.7 218 97-338 2-245 (267)
26 cd02038 FleN-like FleN is a me 100.0 9.8E-30 2.5E-34 218.2 6.4 135 97-301 1-139 (139)
27 PRK13185 chlL protochlorophyll 100.0 4.4E-27 1.1E-31 200.4 16.7 217 95-338 2-246 (269)
28 cd02035 ArsA ArsA ATPase funct 99.9 2.4E-28 6.2E-33 208.9 7.0 167 98-267 1-181 (217)
29 PHA02518 ParA-like protein; Pr 99.9 4E-27 1E-31 200.8 11.5 203 96-340 1-209 (211)
30 CHL00072 chlL photochlorophyll 99.9 3.4E-26 8.7E-31 194.5 14.7 218 97-338 2-245 (271)
31 PRK13234 nifH nitrogenase redu 99.9 1.1E-25 2.8E-30 191.2 14.9 224 96-338 5-250 (293)
32 PRK13236 nitrogenase reductase 99.9 2.4E-25 6.2E-30 188.9 14.0 224 96-338 7-252 (295)
33 pfam10609 ParA ParA/MinD ATPas 99.9 6.9E-27 1.8E-31 199.2 4.2 81 203-283 1-81 (81)
34 cd00550 ArsA_ATPase Oxyanion-t 99.9 3.2E-26 8.2E-31 194.7 5.8 168 96-267 1-200 (254)
35 TIGR03029 EpsG chain length de 99.9 3.1E-25 8E-30 188.1 8.9 161 95-264 103-273 (274)
36 COG1192 Soj ATPases involved i 99.9 2.5E-24 6.3E-29 182.2 12.8 233 95-340 2-254 (259)
37 PRK09841 cryptic autophosphory 99.9 1.4E-24 3.5E-29 183.8 9.7 162 95-265 531-702 (726)
38 TIGR01007 eps_fam capsular exo 99.9 1.2E-24 3.1E-29 184.2 8.0 160 96-265 20-192 (207)
39 PRK11519 tyrosine kinase; Prov 99.9 5.6E-24 1.4E-28 179.8 9.1 162 95-265 526-697 (720)
40 TIGR03453 partition_RepA plasm 99.9 1E-23 2.6E-28 178.1 10.3 229 96-336 105-370 (387)
41 COG3640 CooC CO dehydrogenase 99.9 4.3E-23 1.1E-27 173.9 13.4 220 97-340 2-254 (255)
42 PRK13869 plasmid-partitioning 99.9 1E-23 2.6E-28 178.1 8.7 229 96-336 122-387 (405)
43 TIGR01287 nifH nitrogenase iro 99.9 7.6E-23 1.9E-27 172.2 12.4 224 96-338 1-249 (278)
44 cd02033 BchX Chlorophyllide re 99.9 1.2E-21 3.2E-26 164.2 14.8 222 95-339 31-275 (329)
45 PRK10037 cell division protein 99.9 1.8E-22 4.5E-27 169.8 10.0 221 96-338 2-237 (250)
46 COG1348 NifH Nitrogenase subun 99.9 2.1E-21 5.4E-26 162.6 12.4 224 96-338 2-248 (278)
47 TIGR02016 BchX chlorophyllide 99.9 6.4E-22 1.6E-26 166.1 9.5 221 96-339 1-251 (355)
48 PRK13705 plasmid-partitioning 99.9 1.3E-21 3.3E-26 164.0 10.4 213 96-318 107-350 (388)
49 TIGR03018 pepcterm_TyrKin exop 99.9 3.9E-21 9.9E-26 160.9 12.2 192 45-264 2-207 (207)
50 TIGR01281 DPOR_bchL light-inde 99.8 6.1E-20 1.6E-24 152.9 14.5 219 96-339 1-252 (275)
51 PHA02519 plasmid partition pro 99.8 2.6E-21 6.6E-26 162.0 7.4 211 95-318 106-350 (387)
52 pfam09140 MipZ ATPase MipZ. Mi 99.8 1.2E-20 3.2E-25 157.5 6.7 130 96-238 1-132 (261)
53 TIGR02945 SUF_assoc FeS assemb 99.7 3.2E-18 8.3E-23 141.4 5.8 84 7-90 1-85 (96)
54 pfam02374 ArsA_ATPase Anion-tr 99.7 1.1E-17 2.9E-22 137.8 6.6 161 96-267 2-246 (304)
55 cd03111 CpaE_like This protein 99.7 1.3E-17 3.4E-22 137.3 6.5 101 97-264 1-105 (106)
56 COG4963 CpaE Flp pilus assembl 99.7 4.3E-16 1.1E-20 127.2 12.8 223 95-337 104-342 (366)
57 TIGR03406 FeS_long_SufT probab 99.7 1.5E-16 3.7E-21 130.4 9.1 87 3-89 72-163 (174)
58 pfam07015 VirC1 VirC1 protein. 99.7 1.4E-16 3.6E-21 130.5 8.0 131 96-253 2-132 (231)
59 cd02042 ParA ParA and ParB of 99.7 1.8E-16 4.5E-21 129.8 6.6 84 97-249 1-84 (104)
60 PRK13849 putative crown gall t 99.6 6.1E-16 1.5E-20 126.2 8.1 131 96-253 2-132 (231)
61 pfam01883 DUF59 Domain of unkn 99.6 9.9E-16 2.5E-20 124.8 8.6 75 5-79 1-76 (76)
62 COG2151 PaaD Predicted metal-s 99.6 2.1E-15 5.4E-20 122.6 8.7 92 2-93 10-103 (111)
63 cd02034 CooC The accessory pro 99.6 1.2E-14 3E-19 117.6 8.8 115 98-234 2-116 (116)
64 TIGR00345 arsA arsenite-activa 99.5 1.2E-14 3.2E-19 117.5 4.5 153 101-265 2-265 (330)
65 COG0003 ArsA Predicted ATPase 99.5 8E-14 2E-18 112.1 8.1 169 96-267 3-247 (322)
66 cd01983 Fer4_NifH The Fer4_Nif 99.3 6.4E-12 1.6E-16 99.4 5.9 80 97-249 1-81 (99)
67 TIGR01005 eps_transp_fam exopo 99.2 2.6E-11 6.5E-16 95.4 7.0 163 96-266 561-737 (778)
68 TIGR02159 PA_CoA_Oxy4 phenylac 99.2 7.1E-11 1.8E-15 92.4 7.4 76 16-91 1-78 (152)
69 PRK00090 bioD dithiobiotin syn 98.8 2.6E-08 6.6E-13 75.4 8.1 188 97-306 1-204 (223)
70 KOG2825 consensus 98.7 5.7E-08 1.4E-12 73.1 6.7 160 96-266 20-263 (323)
71 PRK12374 putative dithiobiotin 98.6 2.2E-07 5.5E-12 69.2 8.5 181 96-306 3-206 (231)
72 TIGR00959 ffh signal recogniti 98.4 4.8E-07 1.2E-11 66.9 5.0 237 3-296 20-277 (439)
73 cd03109 DTBS Dethiobiotin synt 98.4 2.2E-06 5.6E-11 62.5 7.7 125 105-301 8-134 (134)
74 PRK06731 flhF flagellar biosyn 98.4 8.3E-06 2.1E-10 58.7 10.6 169 96-306 76-256 (270)
75 PRK01077 cobyrinic acid a,c-di 98.3 4.3E-06 1.1E-10 60.6 8.8 196 97-337 5-214 (451)
76 PRK05632 phosphate acetyltrans 98.3 4.6E-06 1.2E-10 60.4 8.8 196 96-307 2-216 (702)
77 PRK10416 cell division protein 98.3 3.2E-05 8.1E-10 54.8 12.8 162 96-297 296-471 (499)
78 COG1797 CobB Cobyrinic acid a, 98.2 1.3E-05 3.4E-10 57.3 9.7 198 98-338 3-213 (451)
79 TIGR00313 cobQ cobyric acid sy 98.2 8E-06 2E-10 58.8 8.0 186 107-307 10-228 (502)
80 COG0541 Ffh Signal recognition 98.2 1.2E-05 3.1E-10 57.6 8.8 237 3-296 21-269 (451)
81 cd03115 SRP The signal recogni 98.2 8.1E-06 2.1E-10 58.8 7.7 162 97-297 2-170 (173)
82 PRK13505 formate--tetrahydrofo 98.2 8.6E-06 2.2E-10 58.6 7.6 49 97-148 59-107 (556)
83 pfam01268 FTHFS Formate--tetra 98.1 8.4E-06 2.1E-10 58.7 6.8 49 97-148 59-107 (555)
84 PRK13507 formate--tetrahydrofo 98.1 2.1E-05 5.3E-10 56.0 8.5 48 97-147 68-115 (587)
85 pfam00448 SRP54 SRP54-type pro 98.1 5.7E-06 1.5E-10 59.8 5.6 171 96-306 2-179 (196)
86 PRK00771 signal recognition pa 98.1 7.5E-05 1.9E-09 52.3 11.2 43 96-139 98-140 (433)
87 COG1703 ArgK Putative periplas 98.1 5.6E-05 1.4E-09 53.2 10.1 132 92-247 48-185 (323)
88 cd00477 FTHFS Formyltetrahydro 98.1 2.7E-05 6.9E-10 55.3 8.4 73 71-147 18-90 (524)
89 PRK10867 signal recognition pa 98.1 0.00012 3E-09 51.0 11.6 117 3-139 21-144 (453)
90 PRK13896 cobyrinic acid a,c-di 98.1 1.7E-05 4.4E-10 56.5 7.2 193 96-335 2-206 (432)
91 PRK11889 flhF flagellar biosyn 98.1 4.6E-05 1.2E-09 53.7 9.2 169 96-308 242-424 (436)
92 PRK05703 flhF flagellar biosyn 98.0 4.3E-05 1.1E-09 53.9 8.7 168 94-306 209-390 (412)
93 PRK00784 cobyric acid synthase 98.0 4.1E-05 1E-09 54.1 8.4 191 95-306 3-231 (492)
94 COG0132 BioD Dethiobiotin synt 98.0 1.5E-05 3.9E-10 56.9 6.1 182 96-306 3-207 (223)
95 PRK12723 flagellar biosynthesi 98.0 7.4E-05 1.9E-09 52.3 9.4 167 95-306 174-357 (388)
96 TIGR00347 bioD dethiobiotin sy 98.0 1.5E-05 3.8E-10 57.0 5.7 154 104-264 6-187 (187)
97 cd03114 ArgK-like The function 98.0 7.9E-05 2E-09 52.2 9.1 130 97-248 1-134 (148)
98 PRK06995 flhF flagellar biosyn 97.9 9.8E-05 2.5E-09 51.5 9.1 168 95-307 176-357 (404)
99 PRK13886 conjugal transfer pro 97.9 1E-05 2.7E-10 58.0 4.0 44 95-138 2-45 (241)
100 pfam03308 ArgK ArgK protein. T 97.9 0.00018 4.5E-09 49.9 10.1 132 95-248 29-164 (267)
101 TIGR00064 ftsY signal recognit 97.8 3.3E-05 8.5E-10 54.7 4.9 170 94-305 81-277 (284)
102 PRK09435 arginine/ornithine tr 97.8 0.00031 7.9E-09 48.2 9.6 51 93-144 47-98 (325)
103 PRK12727 flagellar biosynthesi 97.7 0.00025 6.5E-09 48.8 8.0 166 96-307 349-528 (557)
104 COG1341 Predicted GTPase or GT 97.6 0.00035 9E-09 47.8 8.0 43 95-138 73-115 (398)
105 TIGR01425 SRP54_euk signal rec 97.6 6E-05 1.5E-09 53.0 3.7 209 6-244 25-248 (453)
106 TIGR03499 FlhF flagellar biosy 97.6 9.6E-05 2.4E-09 51.6 4.4 42 94-136 193-236 (282)
107 KOG0780 consensus 97.5 0.00052 1.3E-08 46.7 7.5 44 95-139 101-144 (483)
108 COG0552 FtsY Signal recognitio 97.5 0.00033 8.4E-09 48.0 6.3 162 95-297 139-315 (340)
109 TIGR00379 cobB cobyrinic acid 97.3 0.0043 1.1E-07 40.6 10.1 196 100-340 4-221 (464)
110 COG1419 FlhF Flagellar GTP-bin 97.3 0.00097 2.5E-08 44.9 6.5 168 95-308 203-385 (407)
111 PRK12726 flagellar biosynthesi 97.2 0.00031 8E-09 48.2 3.7 171 92-304 203-385 (407)
112 cd04169 RF3 RF3 subfamily. Pe 97.2 0.00082 2.1E-08 45.4 5.8 157 95-302 2-162 (267)
113 TIGR00750 lao LAO/AO transport 97.2 0.0031 7.9E-08 41.6 8.2 145 93-266 36-192 (333)
114 cd04170 EF-G_bact Elongation f 97.2 0.004 1E-07 40.8 8.7 152 98-303 2-156 (268)
115 PRK13768 GTPase; Provisional 97.1 0.0011 2.7E-08 44.6 5.4 35 101-135 7-41 (253)
116 COG0857 Pta BioD-like N-termin 96.9 0.0038 9.7E-08 40.9 6.4 190 95-307 2-207 (354)
117 pfam03029 ATP_bind_1 Conserved 96.8 0.0024 6E-08 42.3 5.1 34 103-136 3-36 (234)
118 PRK06278 cobyrinic acid a,c-di 96.7 0.009 2.3E-07 38.5 7.5 173 88-299 237-422 (482)
119 PRK12724 flagellar biosynthesi 96.7 0.0017 4.5E-08 43.2 3.6 167 93-307 221-405 (432)
120 cd01886 EF-G Elongation factor 96.7 0.0077 2E-07 38.9 6.7 151 98-302 2-155 (270)
121 TIGR02237 recomb_radB DNA repa 96.7 0.0031 8E-08 41.5 4.7 158 96-282 12-175 (223)
122 pfam07755 DUF1611 Protein of u 96.6 0.052 1.3E-06 33.4 10.5 164 96-301 114-295 (302)
123 KOG0781 consensus 96.3 0.0047 1.2E-07 40.3 3.6 97 96-211 379-475 (587)
124 cd04168 TetM_like Tet(M)-like 96.2 0.011 2.9E-07 37.8 5.4 90 197-296 58-148 (237)
125 KOG1532 consensus 96.1 0.02 5.2E-07 36.1 6.4 157 93-265 17-190 (366)
126 PRK00313 lpxK tetraacyldisacch 96.0 0.017 4.5E-07 36.5 5.6 41 96-137 52-93 (332)
127 PRK13506 formate--tetrahydrofo 96.0 0.0074 1.9E-07 39.0 3.5 48 97-147 59-106 (577)
128 PRK00741 prfC peptide chain re 96.0 0.027 6.9E-07 35.3 6.3 12 285-296 447-458 (526)
129 TIGR00455 apsK adenylylsulfate 95.8 0.0079 2E-07 38.8 2.9 38 96-134 20-57 (187)
130 PRK07667 uridine kinase; Provi 95.7 0.012 3.1E-07 37.6 3.7 39 96-135 15-53 (190)
131 TIGR00337 PyrG CTP synthase; I 95.7 0.097 2.5E-06 31.6 8.2 131 95-246 4-209 (571)
132 cd03116 MobB Molybdenum is an 95.3 0.025 6.4E-07 35.5 4.2 40 96-136 2-41 (159)
133 PRK12377 putative replication 95.2 0.018 4.7E-07 36.4 3.2 35 99-133 104-138 (248)
134 pfam03205 MobB Molybdopterin g 95.2 0.029 7.4E-07 35.1 4.2 40 97-137 2-42 (122)
135 PRK01906 tetraacyldisaccharide 95.1 0.067 1.7E-06 32.7 5.7 43 96-139 57-100 (339)
136 COG1492 CobQ Cobyric acid synt 95.0 0.041 1E-06 34.1 4.4 196 98-308 7-232 (486)
137 PRK06696 uridine kinase; Valid 94.9 0.034 8.6E-07 34.6 3.9 39 96-135 27-65 (227)
138 COG1484 DnaC DNA replication p 94.8 0.028 7.2E-07 35.1 3.3 35 99-133 108-142 (254)
139 cd00984 DnaB_C DnaB helicase C 94.8 0.028 7.1E-07 35.2 3.2 37 98-134 15-52 (242)
140 cd01890 LepA LepA subfamily. 94.8 0.051 1.3E-06 33.4 4.5 60 204-265 68-128 (179)
141 PRK00652 lpxK tetraacyldisacch 94.8 0.079 2E-06 32.2 5.5 44 96-140 50-94 (334)
142 PRK09270 frcK putative fructos 94.8 0.04 1E-06 34.2 3.9 45 91-136 30-76 (230)
143 COG3598 RepA RecA-family ATPas 94.7 0.043 1.1E-06 33.9 3.9 112 94-216 87-210 (402)
144 PRK06749 replicative DNA helic 94.7 0.1 2.6E-06 31.4 5.8 38 96-134 187-224 (428)
145 pfam03796 DnaB_C DnaB-like hel 94.7 0.03 7.8E-07 34.9 3.1 37 98-134 21-58 (186)
146 KOG0635 consensus 94.6 0.07 1.8E-06 32.5 4.8 37 96-133 32-68 (207)
147 pfam05970 DUF889 PIF1 helicase 94.6 0.11 2.8E-06 31.2 5.8 44 103-146 1-51 (418)
148 PRK10751 molybdopterin-guanine 94.5 0.057 1.4E-06 33.1 4.2 41 96-137 3-43 (170)
149 PRK03846 adenylylsulfate kinas 94.5 0.034 8.7E-07 34.6 2.9 38 96-134 25-62 (198)
150 PRK11545 gntK gluconate kinase 94.4 0.031 8E-07 34.9 2.7 41 96-142 9-51 (177)
151 COG2759 MIS1 Formyltetrahydrof 94.3 0.024 6E-07 35.7 1.9 49 96-147 53-104 (554)
152 PRK09361 radB DNA repair and r 94.3 0.051 1.3E-06 33.5 3.5 45 96-142 23-67 (224)
153 TIGR00176 mobB molybdopterin-g 94.3 0.043 1.1E-06 33.9 3.1 36 97-133 1-36 (165)
154 cd01394 radB RadB. The archaea 94.2 0.059 1.5E-06 33.0 3.8 37 96-133 20-56 (218)
155 COG2403 Predicted GTPase [Gene 94.2 0.045 1.1E-06 33.8 3.1 39 94-132 125-163 (449)
156 COG1072 CoaA Panthothenate kin 94.1 0.064 1.6E-06 32.8 3.7 43 93-136 80-124 (283)
157 PRK04690 murD UDP-N-acetylmura 94.0 0.036 9.2E-07 34.4 2.3 86 42-138 69-154 (468)
158 PRK05541 adenylylsulfate kinas 94.0 0.056 1.4E-06 33.2 3.2 38 96-134 8-45 (176)
159 PRK06526 transposase; Provisio 93.9 0.053 1.4E-06 33.3 3.0 37 95-133 99-135 (254)
160 KOG1534 consensus 93.8 0.09 2.3E-06 31.8 4.0 90 102-212 9-107 (273)
161 cd02027 APSK Adenosine 5'-phos 93.8 0.063 1.6E-06 32.8 3.2 33 102-134 5-37 (149)
162 COG0529 CysC Adenylylsulfate k 93.7 0.062 1.6E-06 32.9 3.1 38 97-134 24-61 (197)
163 cd02028 UMPK_like Uridine mono 93.7 0.088 2.2E-06 31.9 3.8 39 97-136 1-39 (179)
164 COG3367 Uncharacterized conser 93.7 0.62 1.6E-05 26.2 9.6 169 96-307 149-331 (339)
165 PRK07952 DNA replication prote 93.7 0.065 1.7E-06 32.7 3.1 35 99-133 99-133 (242)
166 PRK09183 transposase/IS protei 93.6 0.064 1.6E-06 32.8 3.0 36 96-133 103-138 (258)
167 PRK08181 transposase; Validate 93.5 0.069 1.8E-06 32.6 3.0 37 95-133 107-143 (269)
168 TIGR03600 phage_DnaB phage rep 93.5 0.21 5.4E-06 29.3 5.4 38 96-134 195-233 (421)
169 cd01120 RecA-like_NTPases RecA 93.4 0.11 2.7E-06 31.3 3.8 38 98-136 2-39 (165)
170 PRK08506 replicative DNA helic 93.3 0.091 2.3E-06 31.8 3.3 38 96-134 194-231 (473)
171 cd01122 GP4d_helicase GP4d_hel 93.3 0.075 1.9E-06 32.3 2.9 38 96-134 31-69 (271)
172 pfam00485 PRK Phosphoribulokin 93.2 0.071 1.8E-06 32.5 2.7 37 97-134 1-37 (196)
173 pfam02606 LpxK Tetraacyldisacc 93.2 0.073 1.9E-06 32.4 2.8 43 96-139 36-79 (318)
174 cd02023 UMPK Uridine monophosp 93.2 0.13 3.3E-06 30.7 4.0 36 97-135 1-36 (198)
175 KOG3381 consensus 93.2 0.13 3.3E-06 30.8 4.0 80 4-83 34-123 (161)
176 PRK08939 primosomal protein Dn 93.1 0.092 2.3E-06 31.7 3.1 33 101-133 162-194 (306)
177 pfam01695 IstB IstB-like ATP b 93.1 0.095 2.4E-06 31.6 3.2 34 100-133 51-84 (178)
178 COG1618 Predicted nucleotide k 93.1 0.085 2.2E-06 32.0 2.9 33 98-131 8-40 (179)
179 TIGR01618 phage_P_loop phage n 93.0 0.049 1.2E-06 33.6 1.6 47 89-146 6-53 (229)
180 pfam01583 APS_kinase Adenylyls 92.9 0.11 2.7E-06 31.3 3.2 38 97-135 4-41 (157)
181 PRK05380 pyrG CTP synthetase; 92.9 0.81 2.1E-05 25.4 8.1 41 96-136 3-44 (534)
182 cd01121 Sms Sms (bacterial rad 92.9 0.1 2.6E-06 31.4 3.1 36 98-133 84-119 (372)
183 PRK13748 putative mercuric red 92.8 0.29 7.3E-06 28.4 5.3 77 47-136 9-133 (561)
184 pfam00931 NB-ARC NB-ARC domain 92.7 0.066 1.7E-06 32.7 1.9 21 96-117 20-40 (285)
185 PRK00889 adenylylsulfate kinas 92.7 0.1 2.7E-06 31.4 3.0 37 97-134 6-42 (175)
186 PRK08533 flagellar accessory p 92.7 0.29 7.4E-06 28.4 5.2 38 96-134 25-62 (230)
187 PRK07004 replicative DNA helic 92.7 0.13 3.2E-06 30.8 3.3 38 96-134 214-252 (460)
188 COG1663 LpxK Tetraacyldisaccha 92.5 0.35 8.9E-06 27.9 5.4 42 96-138 48-90 (336)
189 PRK05595 replicative DNA helic 92.4 0.15 4E-06 30.2 3.5 38 96-134 202-240 (444)
190 smart00382 AAA ATPases associa 92.3 0.17 4.4E-06 29.9 3.6 38 96-134 3-40 (148)
191 PRK09165 replicative DNA helic 92.3 0.57 1.5E-05 26.5 6.3 38 96-134 206-258 (484)
192 pfam06418 CTP_synth_N CTP synt 92.2 0.99 2.5E-05 24.9 8.6 107 97-217 3-147 (275)
193 TIGR01054 rgy reverse gyrase; 92.2 0.13 3.3E-06 30.8 2.9 34 96-130 100-134 (1843)
194 PRK05748 replicative DNA helic 92.2 0.43 1.1E-05 27.3 5.6 38 96-134 204-242 (448)
195 cd01124 KaiC KaiC is a circadi 92.0 0.15 3.7E-06 30.4 3.0 33 101-133 4-36 (187)
196 COG0703 AroK Shikimate kinase 91.8 0.072 1.8E-06 32.4 1.2 42 103-149 9-55 (172)
197 PRK03333 coaE dephospho-CoA ki 91.8 0.13 3.4E-06 30.7 2.6 202 97-339 3-234 (394)
198 PRK07263 consensus 91.6 0.54 1.4E-05 26.6 5.5 38 96-134 204-242 (453)
199 COG1763 MobB Molybdopterin-gua 91.5 0.28 7.1E-06 28.5 4.0 40 96-136 3-42 (161)
200 PRK08082 consensus 91.4 0.22 5.5E-06 29.2 3.3 38 96-134 204-242 (453)
201 TIGR01085 murE UDP-N-acetylmur 91.3 0.16 4E-06 30.2 2.6 36 95-133 88-123 (494)
202 pfam08433 KTI12 Chromatin asso 91.3 0.23 5.9E-06 29.1 3.4 38 99-136 2-39 (266)
203 PRK03839 putative kinase; Prov 91.3 0.21 5.4E-06 29.3 3.2 27 97-127 2-28 (180)
204 TIGR03574 selen_PSTK L-seryl-t 91.3 0.2 5.1E-06 29.5 3.0 38 99-136 2-39 (249)
205 PRK05636 replicative DNA helic 91.2 0.23 5.9E-06 29.1 3.3 38 96-134 268-306 (507)
206 PRK08116 hypothetical protein; 91.1 0.22 5.6E-06 29.2 3.1 35 99-133 111-145 (262)
207 PRK09401 reverse gyrase; Revie 91.1 0.21 5.2E-06 29.4 3.0 29 103-131 100-128 (1176)
208 cd02025 PanK Pantothenate kina 91.1 0.35 8.9E-06 27.9 4.1 38 97-135 1-40 (220)
209 COG4088 Predicted nucleotide k 91.0 0.13 3.4E-06 30.7 1.9 35 99-133 4-38 (261)
210 KOG1533 consensus 91.0 0.29 7.3E-06 28.4 3.6 38 102-139 8-45 (290)
211 COG5133 Uncharacterized conser 90.9 0.41 1E-05 27.4 4.3 75 4-78 54-138 (181)
212 PRK05480 uridine kinase; Provi 90.8 0.32 8.3E-06 28.1 3.8 37 96-135 7-43 (209)
213 PRK08006 replicative DNA helic 90.8 0.32 8.2E-06 28.1 3.7 38 96-134 225-263 (471)
214 PRK08840 replicative DNA helic 90.8 0.26 6.5E-06 28.8 3.2 38 96-134 218-256 (464)
215 TIGR00416 sms DNA repair prote 90.6 0.49 1.2E-05 26.9 4.5 84 49-133 25-140 (481)
216 PRK04220 2-phosphoglycerate ki 90.6 0.19 4.8E-06 29.7 2.4 78 51-133 32-125 (306)
217 PRK05537 bifunctional sulfate 90.6 0.16 4.1E-06 30.1 2.0 34 102-135 398-432 (568)
218 PRK08760 replicative DNA helic 90.6 0.79 2E-05 25.5 5.6 38 96-134 230-268 (476)
219 PRK09825 idnK D-gluconate kina 90.5 0.21 5.4E-06 29.3 2.6 42 96-143 4-47 (176)
220 COG0467 RAD55 RecA-superfamily 90.5 0.37 9.4E-06 27.7 3.8 39 95-134 23-61 (260)
221 PRK09302 circadian clock prote 90.5 0.3 7.7E-06 28.3 3.3 38 96-133 266-303 (501)
222 PRK08694 consensus 90.5 0.26 6.7E-06 28.7 3.0 38 96-134 219-257 (468)
223 cd02021 GntK Gluconate kinase 90.0 0.31 7.8E-06 28.2 3.1 34 99-137 2-35 (150)
224 PRK05506 bifunctional sulfate 90.0 0.19 4.8E-06 29.7 1.9 31 103-133 450-480 (613)
225 PRK06547 hypothetical protein; 89.9 0.38 9.6E-06 27.6 3.5 36 93-133 13-48 (184)
226 PRK13695 putative NTPase; Prov 89.9 0.32 8.2E-06 28.1 3.1 30 98-128 6-35 (174)
227 PRK03369 murD UDP-N-acetylmura 89.8 0.35 8.9E-06 27.9 3.2 40 94-137 116-155 (487)
228 cd02022 DPCK Dephospho-coenzym 89.3 0.28 7.1E-06 28.5 2.4 31 97-134 1-31 (179)
229 PRK03731 aroL shikimate kinase 89.2 0.22 5.5E-06 29.3 1.8 46 96-148 4-54 (172)
230 PRK00139 murE UDP-N-acetylmura 89.1 0.31 8E-06 28.2 2.5 34 96-132 101-134 (481)
231 PRK07560 elongation factor EF- 89.0 0.33 8.4E-06 28.1 2.6 10 213-222 436-445 (730)
232 pfam01106 NifU NifU-like domai 89.0 1.4 3.6E-05 23.8 5.9 62 11-76 3-66 (68)
233 PRK05057 aroK shikimate kinase 89.0 0.18 4.5E-06 29.8 1.2 47 95-148 5-56 (172)
234 COG1110 Reverse gyrase [DNA re 88.9 0.39 9.9E-06 27.6 2.9 34 97-131 99-132 (1187)
235 cd00009 AAA The AAA+ (ATPases 88.8 0.44 1.1E-05 27.2 3.1 37 96-133 20-56 (151)
236 cd01393 recA_like RecA is a b 88.8 0.61 1.6E-05 26.2 3.8 37 96-133 20-62 (226)
237 PRK05973 replicative DNA helic 88.5 0.46 1.2E-05 27.1 3.0 38 96-134 65-102 (237)
238 cd01853 Toc34_like Toc34-like 88.5 0.18 4.7E-06 29.7 1.0 30 97-133 33-62 (249)
239 pfam01935 DUF87 Domain of unkn 88.5 0.54 1.4E-05 26.6 3.4 39 94-133 22-61 (218)
240 PRK12339 2-phosphoglycerate ki 88.4 0.35 9E-06 27.9 2.4 33 96-133 4-36 (197)
241 PRK04328 hypothetical protein; 88.4 0.54 1.4E-05 26.6 3.4 37 96-133 25-61 (250)
242 pfam03266 DUF265 Protein of un 88.4 0.45 1.1E-05 27.1 3.0 27 102-128 5-31 (168)
243 cd01125 repA Hexameric Replica 88.2 0.34 8.7E-06 27.9 2.2 28 98-126 3-30 (239)
244 PRK06321 replicative DNA helic 88.2 0.59 1.5E-05 26.3 3.5 37 96-133 227-264 (472)
245 TIGR02173 cyt_kin_arch cytidyl 88.1 0.35 9E-06 27.8 2.3 26 98-123 2-27 (173)
246 COG1936 Predicted nucleotide k 88.1 0.39 9.9E-06 27.6 2.5 29 97-130 2-30 (180)
247 PRK13951 bifunctional shikimat 88.1 0.33 8.4E-06 28.0 2.1 42 103-149 7-53 (488)
248 PRK04663 murD UDP-N-acetylmura 88.1 0.48 1.2E-05 26.9 3.0 77 43-137 69-146 (438)
249 PRK06835 DNA replication prote 88.0 0.53 1.4E-05 26.7 3.1 33 101-133 188-220 (330)
250 PRK11823 DNA repair protein Ra 87.9 0.59 1.5E-05 26.4 3.3 35 98-133 92-126 (454)
251 PRK02006 murD UDP-N-acetylmura 87.7 0.54 1.4E-05 26.6 3.0 36 96-135 123-158 (501)
252 PRK01390 murD UDP-N-acetylmura 87.6 0.54 1.4E-05 26.6 3.0 39 95-137 114-152 (457)
253 cd03113 CTGs CTP synthetase (C 87.5 2.3 5.9E-05 22.4 8.8 32 105-136 11-42 (255)
254 cd01672 TMPK Thymidine monopho 87.4 0.68 1.7E-05 25.9 3.4 34 97-131 2-35 (200)
255 PRK00141 murD UDP-N-acetylmura 87.3 0.64 1.6E-05 26.1 3.2 39 95-137 123-161 (476)
256 TIGR01313 therm_gnt_kin carboh 87.3 0.35 9E-06 27.9 1.8 42 102-143 4-47 (175)
257 cd00983 recA RecA is a bacter 87.2 0.83 2.1E-05 25.4 3.7 53 94-147 54-107 (325)
258 pfam00009 GTP_EFTU Elongation 87.1 0.76 1.9E-05 25.6 3.5 65 199-265 63-128 (185)
259 PRK03806 murD UDP-N-acetylmura 87.0 0.6 1.5E-05 26.3 2.9 40 95-138 105-144 (438)
260 pfam02223 Thymidylate_kin Thym 86.7 0.61 1.6E-05 26.2 2.8 28 103-130 3-30 (186)
261 PRK06904 replicative DNA helic 86.6 0.66 1.7E-05 26.0 3.0 38 96-134 222-260 (472)
262 PRK03803 murD UDP-N-acetylmura 86.5 0.71 1.8E-05 25.8 3.1 38 96-137 110-147 (448)
263 pfam02572 CobA_CobO_BtuR ATP:c 86.5 2 5E-05 22.9 5.3 35 98-133 6-40 (172)
264 KOG3354 consensus 86.5 0.83 2.1E-05 25.4 3.4 43 94-142 11-55 (191)
265 COG0237 CoaE Dephospho-CoA kin 86.4 0.76 1.9E-05 25.6 3.2 33 95-134 2-34 (201)
266 cd00464 SK Shikimate kinase (S 86.3 0.45 1.1E-05 27.1 2.0 41 103-148 6-51 (154)
267 cd02029 PRK_like Phosphoribulo 86.1 1.1 2.8E-05 24.6 3.9 39 97-136 1-39 (277)
268 cd00881 GTP_translation_factor 86.0 0.58 1.5E-05 26.4 2.4 65 199-265 58-123 (189)
269 PRK06067 flagellar accessory p 86.0 0.99 2.5E-05 24.9 3.6 38 96-134 33-70 (241)
270 PRK00131 aroK shikimate kinase 86.0 0.47 1.2E-05 27.0 1.9 44 95-145 5-53 (175)
271 pfam01202 SKI Shikimate kinase 85.8 0.7 1.8E-05 25.8 2.8 24 106-134 2-25 (158)
272 PRK01368 murD UDP-N-acetylmura 85.8 0.7 1.8E-05 25.9 2.8 80 43-138 64-143 (450)
273 cd04166 CysN_ATPS CysN_ATPS su 85.8 0.66 1.7E-05 26.0 2.6 100 200-304 74-176 (208)
274 cd01891 TypA_BipA TypA (tyrosi 85.8 0.65 1.6E-05 26.1 2.6 65 199-265 61-126 (194)
275 COG4240 Predicted kinase [Gene 85.6 0.82 2.1E-05 25.4 3.0 41 96-136 50-92 (300)
276 PRK01438 murD UDP-N-acetylmura 85.6 0.68 1.7E-05 25.9 2.6 89 43-143 78-166 (481)
277 TIGR02632 RhaD_aldol-ADH rhamn 85.5 0.86 2.2E-05 25.2 3.1 35 95-134 424-458 (709)
278 PRK00683 murD UDP-N-acetylmura 85.5 0.6 1.5E-05 26.3 2.3 81 43-137 60-140 (418)
279 pfam01121 CoaE Dephospho-CoA k 85.4 0.67 1.7E-05 26.0 2.5 31 97-134 2-32 (179)
280 pfam00154 RecA recA bacterial 85.3 1.2 2.9E-05 24.4 3.7 53 94-147 51-104 (322)
281 PRK05439 pantothenate kinase; 85.3 0.98 2.5E-05 24.9 3.3 45 93-138 84-131 (312)
282 PRK13947 shikimate kinase; Pro 85.3 0.82 2.1E-05 25.4 2.9 46 95-147 2-52 (171)
283 PRK04308 murD UDP-N-acetylmura 85.1 0.9 2.3E-05 25.1 3.0 42 95-140 110-151 (445)
284 PRK06761 hypothetical protein; 85.1 1 2.6E-05 24.8 3.3 38 96-134 3-41 (281)
285 PRK01710 murD UDP-N-acetylmura 85.0 0.8 2E-05 25.5 2.8 38 96-137 118-155 (458)
286 COG1066 Sms Predicted ATP-depe 85.0 0.99 2.5E-05 24.9 3.2 36 96-133 94-129 (456)
287 KOG4658 consensus 84.9 0.55 1.4E-05 26.6 1.9 25 96-121 180-204 (889)
288 cd01894 EngA1 EngA1 subfamily. 84.8 0.76 1.9E-05 25.6 2.6 21 245-266 95-115 (157)
289 PRK13948 shikimate kinase; Pro 84.8 0.76 1.9E-05 25.6 2.6 44 96-145 11-59 (182)
290 PRK06217 hypothetical protein; 84.8 1.1 2.7E-05 24.6 3.3 30 98-133 4-33 (185)
291 PRK04195 replication factor C 84.7 1.1 2.7E-05 24.7 3.2 33 98-133 42-74 (403)
292 TIGR00991 3a0901s02IAP34 GTP-b 84.6 0.32 8.2E-06 28.1 0.6 28 253-283 202-229 (328)
293 PRK12740 elongation factor G; 84.5 0.76 2E-05 25.6 2.5 11 212-222 433-443 (670)
294 pfam06745 KaiC KaiC. This fami 84.5 1.2 3.1E-05 24.2 3.5 37 96-133 20-57 (231)
295 PRK10218 GTP-binding protein; 84.5 0.85 2.2E-05 25.3 2.7 11 293-303 466-476 (607)
296 COG3265 GntK Gluconate kinase 84.3 0.71 1.8E-05 25.8 2.2 36 103-143 2-39 (161)
297 PRK00007 elongation factor G; 84.3 0.83 2.1E-05 25.4 2.6 10 213-222 454-463 (693)
298 TIGR01087 murD UDP-N-acetylmur 84.3 0.98 2.5E-05 24.9 2.9 92 40-144 64-155 (476)
299 PRK13949 shikimate kinase; Pro 84.2 1.4 3.5E-05 23.9 3.6 48 94-148 1-53 (169)
300 PRK13764 ATPase; Provisional 84.1 0.87 2.2E-05 25.2 2.6 47 96-143 260-309 (605)
301 PRK07261 topology modulation p 84.1 1.3 3.3E-05 24.1 3.5 31 98-132 3-33 (171)
302 COG0771 MurD UDP-N-acetylmuram 84.0 0.92 2.4E-05 25.1 2.7 81 42-138 69-149 (448)
303 PRK02705 murD UDP-N-acetylmura 83.8 0.94 2.4E-05 25.0 2.7 38 96-137 110-147 (459)
304 pfam08423 Rad51 Rad51. Rad51 i 83.7 3 7.7E-05 21.6 5.2 49 96-145 43-97 (261)
305 COG0468 RecA RecA/RadA recombi 83.6 1.5 3.9E-05 23.6 3.7 39 94-133 59-97 (279)
306 cd03289 ABCC_CFTR2 The CFTR su 83.4 1.2 3E-05 24.4 3.0 39 96-136 31-69 (275)
307 pfam05729 NACHT NACHT domain. 83.3 0.9 2.3E-05 25.1 2.4 26 97-123 2-27 (165)
308 cd02020 CMPK Cytidine monophos 83.2 0.93 2.4E-05 25.0 2.4 26 97-123 1-26 (147)
309 COG3854 SpoIIIAA ncharacterize 83.1 3.7 9.5E-05 21.0 7.6 113 102-246 143-260 (308)
310 PRK13946 shikimate kinase; Pro 83.0 0.94 2.4E-05 25.0 2.4 49 93-148 19-72 (195)
311 PRK08118 topology modulation p 83.0 1 2.6E-05 24.8 2.5 33 95-132 2-34 (167)
312 PRK10528 multifunctional acyl- 82.9 3.8 9.7E-05 21.0 6.1 113 201-340 70-183 (191)
313 KOG2749 consensus 82.8 1.3 3.3E-05 24.0 3.1 43 95-139 104-146 (415)
314 PRK02472 murD UDP-N-acetylmura 82.5 1.2 3E-05 24.3 2.8 39 95-137 112-150 (450)
315 cd01123 Rad51_DMC1_radA Rad51_ 82.4 1.9 4.9E-05 22.9 3.8 46 96-142 19-70 (235)
316 COG0504 PyrG CTP synthase (UTP 82.3 4 0.0001 20.8 8.0 41 96-136 2-43 (533)
317 TIGR00763 lon ATP-dependent pr 82.1 1.3 3.4E-05 24.0 2.9 120 7-127 337-481 (941)
318 TIGR02640 gas_vesic_GvpN gas v 82.0 1.6 4.1E-05 23.4 3.3 116 103-240 28-164 (265)
319 PRK13351 elongation factor G; 82.0 1.1 2.8E-05 24.6 2.4 10 213-222 449-458 (687)
320 PRK00698 tmk thymidylate kinas 81.8 1.9 4.7E-05 23.0 3.5 35 96-131 4-38 (204)
321 pfam08419 consensus 81.6 0.94 2.4E-05 25.0 2.0 28 91-118 70-97 (116)
322 PRK07933 thymidylate kinase; V 81.5 1.4 3.7E-05 23.8 2.9 31 102-132 6-36 (213)
323 PRK08154 anaerobic benzoate ca 81.4 0.78 2E-05 25.5 1.5 48 96-149 134-186 (304)
324 COG0572 Udk Uridine kinase [Nu 81.0 2 5.2E-05 22.8 3.5 38 96-136 9-46 (218)
325 KOG4230 consensus 80.8 1.4 3.5E-05 23.9 2.6 43 101-146 374-416 (935)
326 PRK00091 miaA tRNA delta(2)-is 80.8 1.8 4.5E-05 23.2 3.1 33 95-133 4-36 (304)
327 PTZ00301 uridine kinase; Provi 80.6 2.3 5.9E-05 22.4 3.7 40 96-136 4-45 (210)
328 PRK09554 feoB ferrous iron tra 80.6 4.6 0.00012 20.4 7.4 13 200-212 479-491 (772)
329 COG2874 FlaH Predicted ATPases 80.4 4.1 0.00011 20.7 4.9 38 96-134 29-66 (235)
330 PRK00421 murC UDP-N-acetylmura 80.4 2 5.1E-05 22.8 3.3 30 95-127 108-137 (459)
331 COG0050 TufB GTPases - transla 80.3 1.2 2.9E-05 24.4 2.1 22 103-124 19-40 (394)
332 pfam04851 ResIII Type III rest 80.3 1.7 4.4E-05 23.3 3.0 25 106-130 28-52 (103)
333 PRK12739 elongation factor G; 79.7 1.5 3.8E-05 23.7 2.5 10 213-222 452-461 (693)
334 cd01889 SelB_euk SelB subfamil 79.7 1.4 3.5E-05 23.9 2.3 66 198-265 63-129 (192)
335 cd02026 PRK Phosphoribulokinas 79.6 2.3 5.9E-05 22.4 3.4 37 97-136 1-37 (273)
336 PRK13477 bifunctional pantoate 79.5 5 0.00013 20.2 5.9 29 94-123 283-311 (512)
337 CHL00181 cbbX CbbX; Provisiona 79.5 1.3 3.4E-05 24.0 2.1 28 98-125 61-88 (287)
338 COG0305 DnaB Replicative DNA h 79.3 1.8 4.6E-05 23.1 2.8 38 96-134 197-235 (435)
339 COG1102 Cmk Cytidylate kinase 79.1 1.3 3.2E-05 24.2 2.0 25 97-122 2-26 (179)
340 COG1428 Deoxynucleoside kinase 79.0 1.7 4.2E-05 23.3 2.5 27 94-121 3-29 (216)
341 COG1162 Predicted GTPases [Gen 78.9 0.35 9E-06 27.8 -0.9 20 98-117 166-185 (301)
342 cd04167 Snu114p Snu114p subfam 78.5 1.4 3.5E-05 23.9 2.0 63 201-265 69-132 (213)
343 PRK00625 shikimate kinase; Pro 78.4 1.8 4.6E-05 23.1 2.6 41 103-148 7-56 (173)
344 cd02030 NDUO42 NADH:Ubiquinone 78.3 1.7 4.3E-05 23.3 2.4 23 97-120 1-23 (219)
345 COG1004 Ugd Predicted UDP-gluc 78.2 5.4 0.00014 19.9 5.4 26 103-133 7-32 (414)
346 PRK09354 recA recombinase A; P 77.9 2.9 7.4E-05 21.7 3.5 52 94-146 59-111 (350)
347 PRK11929 putative bifunctional 77.9 2.6 6.7E-05 22.0 3.3 34 96-132 112-145 (953)
348 PRK13721 conjugal transfer ATP 77.9 3.1 7.8E-05 21.6 3.6 32 102-133 480-511 (864)
349 PRK12338 hypothetical protein; 77.9 1.7 4.3E-05 23.3 2.3 33 97-133 5-37 (320)
350 COG2074 2-phosphoglycerate kin 77.8 1.8 4.6E-05 23.1 2.4 77 51-133 30-122 (299)
351 cd01885 EF2 EF2 (for archaea a 77.7 1.5 3.7E-05 23.7 2.0 65 199-265 69-134 (222)
352 COG0466 Lon ATP-dependent Lon 77.6 4 0.0001 20.8 4.1 78 50-128 284-382 (782)
353 COG0125 Tmk Thymidylate kinase 77.5 2.8 7.2E-05 21.8 3.3 35 96-131 4-38 (208)
354 PRK08770 DNA polymerase III su 77.4 2.2 5.5E-05 22.6 2.7 24 100-123 42-65 (663)
355 PRK07773 replicative DNA helic 77.3 5.7 0.00015 19.8 5.1 38 96-134 204-242 (868)
356 COG1855 ATPase (PilT family) [ 76.9 2.3 5.8E-05 22.5 2.7 34 96-130 264-297 (604)
357 cd02019 NK Nucleoside/nucleoti 76.7 3.5 9E-05 21.2 3.7 33 97-132 1-33 (69)
358 KOG2004 consensus 76.5 2 5E-05 22.9 2.3 44 94-137 436-483 (906)
359 pfam00910 RNA_helicase RNA hel 76.4 1.6 4E-05 23.5 1.8 23 101-123 3-25 (105)
360 KOG1805 consensus 76.4 2.2 5.6E-05 22.6 2.5 33 99-131 688-720 (1100)
361 TIGR03172 probable selenium-de 76.3 2.2 5.6E-05 22.5 2.5 30 104-133 5-34 (232)
362 PRK12337 2-phosphoglycerate ki 75.9 2.1 5.4E-05 22.6 2.4 78 51-133 202-295 (492)
363 TIGR02880 cbbX_cfxQ CbbX prote 75.1 2 5.2E-05 22.8 2.1 108 96-217 58-171 (284)
364 COG3903 Predicted ATPase [Gene 75.0 2 5.2E-05 22.8 2.1 37 94-133 13-51 (414)
365 pfam01926 MMR_HSR1 GTPase of u 75.0 2.9 7.5E-05 21.7 2.9 15 200-215 34-48 (106)
366 PRK13700 conjugal transfer pro 74.8 5.2 0.00013 20.1 4.1 51 97-148 187-243 (732)
367 pfam08245 Mur_ligase_M Mur lig 74.8 3.1 7.9E-05 21.6 3.0 27 105-131 3-29 (188)
368 pfam09650 PHA_gran_rgn Putativ 74.7 6.4 0.00016 19.5 4.6 45 24-68 41-85 (87)
369 cd01879 FeoB Ferrous iron tran 74.5 5.5 0.00014 19.9 4.2 15 103-117 3-17 (158)
370 PRK10773 murF UDP-N-acetylmura 74.4 1.8 4.6E-05 23.1 1.7 116 1-129 1-131 (452)
371 PRK00081 coaE dephospho-CoA ki 74.3 2.4 6.1E-05 22.3 2.3 32 96-134 3-34 (199)
372 COG0194 Gmk Guanylate kinase [ 74.2 2 5.1E-05 22.8 1.9 22 97-118 5-26 (191)
373 PRK08691 DNA polymerase III su 74.2 2.3 5.9E-05 22.4 2.2 25 99-123 41-65 (704)
374 PRK08862 short chain dehydroge 74.1 2.4 6.2E-05 22.2 2.3 34 96-134 6-39 (227)
375 PRK08324 short chain dehydroge 74.0 3.1 7.8E-05 21.6 2.8 35 95-134 421-455 (676)
376 KOG1298 consensus 73.9 2.8 7.2E-05 21.8 2.6 36 96-138 47-82 (509)
377 PRK06851 hypothetical protein; 73.7 7 0.00018 19.2 4.6 48 94-142 30-77 (368)
378 PRK10875 recD exonuclease V su 73.7 4.8 0.00012 20.3 3.7 29 92-120 158-186 (607)
379 TIGR02928 TIGR02928 orc1/cdc6 73.7 2.1 5.2E-05 22.7 1.8 35 102-136 49-90 (383)
380 TIGR00682 lpxK tetraacyldisacc 73.6 2.7 7E-05 21.9 2.4 41 96-136 33-74 (342)
381 PRK12323 DNA polymerase III su 73.3 3.1 7.9E-05 21.6 2.7 26 99-124 41-66 (721)
382 TIGR03420 DnaA_homol_Hda DnaA 73.2 3.7 9.3E-05 21.1 3.0 38 96-134 39-76 (226)
383 PRK03815 murD UDP-N-acetylmura 73.2 3.2 8.1E-05 21.5 2.7 72 42-137 54-125 (401)
384 PRK08945 short chain dehydroge 73.1 3.6 9.3E-05 21.1 3.0 33 96-133 14-46 (245)
385 TIGR00437 feoB ferrous iron tr 72.5 4 0.0001 20.8 3.1 52 240-299 79-136 (733)
386 cd01884 EF_Tu EF-Tu subfamily. 72.4 2.7 6.9E-05 22.0 2.2 66 199-265 61-127 (195)
387 pfam02562 PhoH PhoH-like prote 72.3 2.8 7.1E-05 21.9 2.2 29 97-125 20-48 (205)
388 PRK01184 hypothetical protein; 72.2 3.2 8.2E-05 21.5 2.5 32 96-134 2-34 (183)
389 TIGR02397 dnaX_nterm DNA polym 72.0 2.7 6.8E-05 22.0 2.1 65 100-169 40-123 (363)
390 PRK08853 DNA polymerase III su 71.8 3.4 8.6E-05 21.3 2.6 24 100-123 42-65 (717)
391 PRK08643 acetoin reductase; Va 71.7 3.3 8.3E-05 21.4 2.5 36 94-134 1-36 (256)
392 PRK05986 cob(I)yrinic acid a,c 71.6 4.5 0.00012 20.5 3.2 36 97-133 24-59 (190)
393 TIGR02881 spore_V_K stage V sp 71.6 3 7.8E-05 21.6 2.3 155 99-292 45-210 (261)
394 PRK00411 cdc6 cell division co 71.4 4.9 0.00012 20.2 3.3 34 101-134 60-95 (394)
395 PRK06645 DNA polymerase III su 71.3 3 7.5E-05 21.7 2.2 24 100-123 47-70 (507)
396 PRK06872 DNA polymerase III su 71.3 3 7.6E-05 21.7 2.2 25 99-123 41-65 (696)
397 PRK06720 hypothetical protein; 71.2 2.9 7.3E-05 21.8 2.1 34 96-134 17-50 (169)
398 cd04163 Era Era subfamily. Er 71.1 3.4 8.6E-05 21.3 2.4 27 97-130 5-31 (168)
399 PRK12824 acetoacetyl-CoA reduc 71.0 3.5 8.9E-05 21.2 2.5 35 94-133 1-35 (245)
400 TIGR02836 spore_IV_A stage IV 70.9 2.5 6.3E-05 22.2 1.7 60 228-298 146-214 (492)
401 PRK04040 adenylate kinase; Pro 70.8 5 0.00013 20.2 3.2 31 96-128 3-33 (189)
402 PRK08233 hypothetical protein; 70.8 6 0.00015 19.6 3.7 109 96-241 4-112 (182)
403 cd03257 ABC_NikE_OppD_transpor 70.6 7 0.00018 19.2 4.0 42 96-138 32-73 (228)
404 TIGR03015 pepcterm_ATPase puta 70.5 5.5 0.00014 19.9 3.4 35 96-130 43-77 (269)
405 KOG3347 consensus 70.5 3.1 8E-05 21.5 2.2 22 98-120 10-31 (176)
406 cd00561 CobA_CobO_BtuR ATP:cor 70.4 5 0.00013 20.2 3.2 35 98-133 5-39 (159)
407 COG0480 FusA Translation elong 70.2 8 0.0002 18.8 4.2 10 213-222 451-460 (697)
408 PRK06305 DNA polymerase III su 70.2 3.3 8.4E-05 21.4 2.2 24 100-123 43-66 (462)
409 PRK06172 short chain dehydroge 70.1 3.5 8.9E-05 21.2 2.3 33 96-133 8-40 (253)
410 PRK05648 DNA polymerase III su 70.0 3.3 8.5E-05 21.3 2.2 24 100-123 42-65 (705)
411 PRK07429 phosphoribulokinase; 70.0 7.5 0.00019 19.0 4.0 38 96-136 9-46 (331)
412 PRK10846 bifunctional folylpol 69.8 4.2 0.00011 20.7 2.7 47 96-152 50-96 (416)
413 PRK09111 DNA polymerase III su 69.8 3.9 1E-04 20.9 2.5 24 100-123 49-72 (600)
414 PRK00023 cmk cytidylate kinase 69.8 4.1 0.0001 20.8 2.6 32 96-133 5-36 (225)
415 PRK05896 DNA polymerase III su 69.6 3.4 8.6E-05 21.3 2.2 24 100-123 42-65 (613)
416 KOG1200 consensus 69.6 6.2 0.00016 19.5 3.5 36 95-135 14-49 (256)
417 TIGR03575 selen_PSTK_euk L-ser 69.5 5.8 0.00015 19.8 3.3 40 98-137 1-41 (340)
418 pfam09488 Osmo_MPGsynth Mannos 69.5 4.2 0.00011 20.7 2.6 33 100-138 140-174 (381)
419 PRK13632 cbiO cobalt transport 69.5 5.5 0.00014 19.9 3.2 40 96-136 37-76 (273)
420 PRK07003 DNA polymerase III su 69.2 4.1 0.00011 20.7 2.5 25 99-123 41-65 (816)
421 pfam07726 AAA_3 ATPase family 68.9 4.4 0.00011 20.5 2.7 26 102-127 5-30 (131)
422 pfam07287 DUF1446 Protein of u 68.9 2.6 6.6E-05 22.1 1.5 43 98-140 72-116 (362)
423 TIGR02868 CydC ABC transporter 68.9 9 0.00023 18.5 5.6 40 96-136 388-427 (566)
424 PRK05564 DNA polymerase III su 68.7 3.6 9.2E-05 21.1 2.2 24 100-123 30-53 (313)
425 PRK06849 hypothetical protein; 68.6 6.7 0.00017 19.3 3.5 36 95-135 4-39 (387)
426 PRK07133 DNA polymerase III su 68.6 3.7 9.4E-05 21.0 2.2 25 100-124 44-68 (718)
427 CHL00095 clpC Clp protease ATP 68.5 6.3 0.00016 19.5 3.3 33 101-133 205-244 (823)
428 KOG1969 consensus 68.4 5.7 0.00015 19.8 3.1 35 96-133 326-360 (877)
429 KOG0460 consensus 68.1 4.5 0.00011 20.5 2.5 25 103-127 61-85 (449)
430 TIGR00454 TIGR00454 conserved 68.0 6.2 0.00016 19.6 3.2 75 57-134 29-108 (204)
431 PRK06227 consensus 68.0 4.1 0.0001 20.7 2.3 33 96-133 6-38 (256)
432 cd03808 GT1_cap1E_like This fa 67.5 4.9 0.00013 20.2 2.7 42 277-323 273-315 (359)
433 PRK13898 type IV secretion sys 67.5 7.1 0.00018 19.1 3.5 31 103-133 453-483 (800)
434 PRK12402 replication factor C 67.5 3.8 9.7E-05 21.0 2.1 23 99-121 39-61 (337)
435 TIGR01369 CPSaseII_lrg carbamo 67.5 9.6 0.00025 18.3 7.3 75 59-133 525-616 (1089)
436 PRK07994 DNA polymerase III su 67.4 4 0.0001 20.8 2.2 24 100-123 42-65 (643)
437 PRK08451 DNA polymerase III su 67.0 4.1 0.0001 20.7 2.2 24 100-123 40-63 (523)
438 PRK06114 short chain dehydroge 66.9 4.3 0.00011 20.6 2.2 33 96-133 17-49 (262)
439 PRK10206 putative dehydrogenas 66.8 6.9 0.00018 19.2 3.3 15 303-317 302-316 (345)
440 PRK07845 flavoprotein disulfid 66.6 4.4 0.00011 20.5 2.3 26 108-133 185-210 (467)
441 PRK07414 cob(I)yrinic acid a,c 66.4 6.7 0.00017 19.3 3.1 40 93-133 19-58 (178)
442 pfam00437 GSPII_E Type II/IV s 66.3 6.9 0.00018 19.2 3.2 32 99-130 142-173 (283)
443 PRK05563 DNA polymerase III su 66.2 4.4 0.00011 20.5 2.2 24 100-123 42-65 (541)
444 KOG1803 consensus 66.1 9.2 0.00024 18.4 3.8 35 97-131 202-236 (649)
445 PRK12384 sorbitol-6-phosphate 66.1 5.1 0.00013 20.1 2.5 35 94-133 1-35 (259)
446 PRK13973 thymidylate kinase; P 65.9 8 0.0002 18.8 3.5 34 96-130 4-37 (216)
447 PRK06398 aldose dehydrogenase; 65.7 4.8 0.00012 20.3 2.3 34 96-134 7-40 (256)
448 PRK05717 oxidoreductase; Valid 65.6 4.9 0.00013 20.2 2.3 33 96-133 11-43 (255)
449 TIGR00041 DTMP_kinase thymidyl 65.6 5.7 0.00015 19.8 2.7 28 103-130 9-37 (211)
450 PRK06194 hypothetical protein; 65.6 4.7 0.00012 20.3 2.3 33 96-133 7-39 (301)
451 PRK10566 esterase; Provisional 65.5 5.3 0.00014 20.0 2.5 40 96-138 29-68 (249)
452 PRK05876 short chain dehydroge 65.5 4.7 0.00012 20.3 2.2 34 96-134 7-40 (275)
453 pfam05496 RuvB_N Holliday junc 65.4 4.7 0.00012 20.3 2.2 24 99-122 53-76 (234)
454 pfam00350 Dynamin_N Dynamin fa 65.3 7.2 0.00018 19.1 3.1 59 202-261 100-164 (168)
455 TIGR01082 murC UDP-N-acetylmur 65.0 3.7 9.5E-05 21.0 1.6 226 93-337 105-412 (491)
456 COG0769 MurE UDP-N-acetylmuram 64.9 7.7 0.0002 18.9 3.2 40 95-137 91-130 (475)
457 PRK00440 rfc replication facto 64.8 5 0.00013 20.2 2.2 25 99-123 40-64 (318)
458 PRK00089 era GTP-binding prote 64.8 6.8 0.00017 19.3 2.9 30 96-132 9-38 (296)
459 PRK06841 short chain dehydroge 64.6 5.2 0.00013 20.1 2.3 33 96-133 16-48 (255)
460 pfam01637 Arch_ATPase Archaeal 64.5 10 0.00026 18.1 3.8 37 96-133 21-57 (223)
461 COG4604 CeuD ABC-type enteroch 64.5 10 0.00026 18.1 3.8 40 96-136 28-67 (252)
462 COG0283 Cmk Cytidylate kinase 64.5 5.3 0.00013 20.0 2.3 27 96-123 5-31 (222)
463 pfam02492 cobW CobW/HypB/UreG, 64.4 11 0.00027 18.0 3.9 41 98-139 2-42 (174)
464 PRK12828 short chain dehydroge 64.2 5.2 0.00013 20.0 2.3 33 96-133 8-40 (239)
465 PRK12409 D-amino acid dehydrog 64.1 8.4 0.00021 18.7 3.3 32 95-133 2-33 (410)
466 COG2019 AdkA Archaeal adenylat 64.0 5.3 0.00014 20.0 2.3 25 95-120 4-28 (189)
467 COG0370 FeoB Fe2+ transport sy 63.8 11 0.00029 17.8 4.8 10 103-112 10-19 (653)
468 PRK08220 2,3-dihydroxybenzoate 63.8 5.5 0.00014 19.9 2.3 34 96-134 9-42 (253)
469 COG1160 Predicted GTPases [Gen 63.8 6.7 0.00017 19.3 2.8 66 197-265 220-298 (444)
470 COG0773 MurC UDP-N-acetylmuram 63.8 9.2 0.00023 18.4 3.4 36 94-132 106-141 (459)
471 PRK13873 conjugal transfer ATP 63.7 9.5 0.00024 18.3 3.5 31 103-133 448-479 (815)
472 PRK00098 ribosome-associated G 63.7 11 0.00029 17.8 4.1 30 303-338 264-293 (298)
473 PRK06647 DNA polymerase III su 63.6 5.3 0.00014 20.0 2.2 24 100-123 42-65 (560)
474 PRK12829 short chain dehydroge 63.6 5.5 0.00014 19.9 2.3 33 96-133 12-44 (264)
475 COG2274 SunT ABC-type bacterio 63.5 7 0.00018 19.2 2.8 38 96-134 500-537 (709)
476 KOG0465 consensus 63.5 5.9 0.00015 19.7 2.4 23 116-139 287-310 (721)
477 TIGR02823 oxido_YhdH putative 63.5 6.5 0.00017 19.4 2.6 32 96-132 150-181 (330)
478 pfam07517 SecA_DEAD SecA DEAD- 63.3 6.5 0.00017 19.4 2.6 47 100-146 94-148 (381)
479 TIGR03594 GTPase_EngA ribosome 63.3 7.9 0.0002 18.9 3.0 65 198-265 215-292 (429)
480 TIGR03206 benzo_BadH 2-hydroxy 63.3 5.7 0.00015 19.8 2.3 34 96-134 4-37 (250)
481 PRK05872 short chain dehydroge 63.1 5.6 0.00014 19.8 2.2 34 96-134 10-43 (296)
482 TIGR01447 recD exodeoxyribonuc 63.0 4.7 0.00012 20.3 1.9 31 93-123 239-269 (753)
483 pfam09848 DUF2075 Uncharacteri 62.9 9.6 0.00025 18.3 3.4 20 102-121 7-26 (348)
484 KOG1384 consensus 62.8 6.8 0.00017 19.3 2.6 32 96-133 8-39 (348)
485 cd03288 ABCC_SUR2 The SUR doma 62.7 12 0.0003 17.7 4.2 39 96-135 48-86 (257)
486 COG0770 MurF UDP-N-acetylmuram 62.7 5.8 0.00015 19.8 2.3 29 95-126 103-131 (451)
487 PRK12745 3-ketoacyl-(acyl-carr 62.6 5.7 0.00015 19.8 2.2 34 95-133 5-38 (259)
488 PRK08213 gluconate 5-dehydroge 62.5 6.1 0.00015 19.6 2.3 33 96-133 13-45 (259)
489 PRK09518 bifunctional cytidyla 62.5 6.3 0.00016 19.5 2.4 19 97-116 281-299 (714)
490 PRK05653 fabG 3-ketoacyl-(acyl 62.3 6.2 0.00016 19.6 2.4 33 96-133 6-38 (246)
491 PRK06346 consensus 62.3 6.2 0.00016 19.6 2.3 33 96-133 6-38 (251)
492 pfam07724 AAA_2 AAA domain (Cd 62.3 10 0.00026 18.1 3.4 46 101-146 8-55 (168)
493 PRK06921 hypothetical protein; 62.2 7.7 0.0002 18.9 2.8 33 98-131 119-152 (265)
494 cd01895 EngA2 EngA2 subfamily. 62.2 6.9 0.00017 19.3 2.6 18 98-116 5-22 (174)
495 PRK06949 short chain dehydroge 62.2 6 0.00015 19.6 2.3 33 96-133 10-42 (258)
496 PRK08589 short chain dehydroge 61.9 5.7 0.00015 19.8 2.1 33 96-133 7-39 (272)
497 PRK07666 fabG 3-ketoacyl-(acyl 61.9 6.3 0.00016 19.5 2.3 33 96-133 7-39 (238)
498 PRK12269 bifunctional cytidyla 61.9 6.5 0.00017 19.4 2.4 23 97-120 36-58 (863)
499 PRK07825 short chain dehydroge 61.8 5.9 0.00015 19.7 2.2 33 96-133 6-38 (273)
500 PRK06057 short chain dehydroge 61.8 6.3 0.00016 19.5 2.3 33 96-133 8-40 (255)
No 1
>PRK11670 putative ATPase; Provisional
Probab=100.00 E-value=0 Score=695.76 Aligned_cols=338 Identities=37% Similarity=0.658 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 20289999987203384797643635876556988998999999668784789999999999986067634235503222
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (341)
+.++++|+++|++|.||++++||+++|||++|.++++++.+++.++++.|+.++.++++++++++.++|+++++|.++.+
T Consensus 11 ~~l~~~v~~~L~~v~dP~~~~~iv~lg~v~~i~i~~~~v~i~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 90 (369)
T PRK11670 11 EALRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSHN 90 (369)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 89999999998077798999880037970169997999999999688898879999999999998578974589999740
Q ss_pred CCCC----CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC-CCCCCCCCC
Q ss_conf 3433----32223465420102446665425789999898723577506988224678765310002456-311233445
Q gi|254780831|r 83 KNPP----QQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK-VEISDKKFL 157 (341)
Q Consensus 83 ~~~~----~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~-~~~~~~~~i 157 (341)
.... .....+++||||||+||||||||||+|+|||+|||++|+||+++|||+||||+|.|||++++ +...++..+
T Consensus 91 ~~~~~~~~~~~~~~~v~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgllDADi~Gpsip~mlG~~~~~~~~~d~~~i 170 (369)
T PRK11670 91 IATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHM 170 (369)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCEE
T ss_conf 45645556678888868899998589988899999999999996699378982478887650230665456646889663
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCC
Q ss_conf 76632230322333435522100013420247899986752137775899745564442100000002234026742144
Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQ 237 (341)
Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~ 237 (341)
.|+..+|++.+|+||+++++.+.+|||||+++++.||+.++.|+++|||||||||||||++|++.|.++.+++++|||||
T Consensus 171 ~P~~~~gi~~~S~g~l~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtgDi~Ltl~q~v~~~gavvVTTPq 250 (369)
T PRK11670 171 APIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQ 250 (369)
T ss_pred CCCCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 76000581253022023766402221301679999987774337888899837998752777887645766079962773
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 31134566677764001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 238 DLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 238 ~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
++|+.|++|++.||++.++|++|+|||||||.|++|++++++||++++++++++|+++|||+||+|+++++++++|+|++
T Consensus 251 ~~Al~Da~k~i~m~~k~~vpilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~lLG~IP~d~~I~ea~d~G~PvV 330 (369)
T PRK11670 251 DIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTV 330 (369)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCEE
T ss_conf 76999999999999854888506886363333689997100136660999999839987997989889996185998569
Q ss_pred EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97799989999999999999983
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
+++|+|++|++|++||++++.++
T Consensus 331 ~~~P~S~aA~Af~~iA~~la~~~ 353 (369)
T PRK11670 331 VSRPESEFTAIYRQLADRVAAQL 353 (369)
T ss_pred EECCCCHHHHHHHHHHHHHHHHH
T ss_conf 82899989999999999999999
No 2
>KOG3022 consensus
Probab=100.00 E-value=0 Score=549.26 Aligned_cols=290 Identities=39% Similarity=0.664 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEE--ECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 47899999999999860676342355--0322234333222346542010244666542578999989872357750698
Q gi|254780831|r 52 AHQLQSLRSNAQQIIQNIPTVKNAVV--TLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAI 129 (341)
Q Consensus 52 cp~~~~l~~~i~~~l~~i~gv~~v~V--~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~l 129 (341)
||..+.....-.......|++..+.. ......-+..+....++++||+|+||||||||||+|+|||++||+.|++|++
T Consensus 2 cpg~~s~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl 81 (300)
T KOG3022 2 CPGVLSSEAGKAEECAGCPNVGYCSSSPVQPDPDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGL 81 (300)
T ss_pred CCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 88756445142101157963365335776767776633233134545899986788776168999999998617971799
Q ss_pred EECCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 822467876531000245631123344576-63223032233343552-2100013420247899986752137775899
Q gi|254780831|r 130 LDADVYGPSIPKLLKISGKVEISDKKFLKP-KENYGIKIMSMASLVDE-NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLL 207 (341)
Q Consensus 130 iDaDi~~ps~~~~lg~~~~~~~~~~~~i~p-~~~~gi~~~s~g~l~~~-~~~~~~rg~~~~~~l~~~l~~~~w~~~D~li 207 (341)
+|+|++|||+|+|||+++++..+.++...| ...+++++||+||+.++ +.+++||||+.+.+|+|||+++.||++|||+
T Consensus 82 LD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLv 161 (300)
T KOG3022 82 LDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLV 161 (300)
T ss_pred EEECCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 75035587705340877744550488741444438767887564328887662654547889999997168877767799
Q ss_pred EECCCCCCCCCCHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHH
Q ss_conf 74556444210000000223-40267421443113456667776400122114455442024587788665124776589
Q gi|254780831|r 208 IDMPPGTGDAHLTIAQKIPL-SGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGAR 286 (341)
Q Consensus 208 iD~ppG~gd~~lsl~~~~~~-~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~ 286 (341)
|||||||||+|||+.|.++. +|+|+|||||..|+.|++|.++|+++.++|++|+|||||+|+|++|++.+++|+.++++
T Consensus 162 iDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~ 241 (300)
T KOG3022 162 IDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGE 241 (300)
T ss_pred EECCCCCCHHHHHEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEECCCCCHH
T ss_conf 95899987014310000445573499817205566888865026664598568889625553078878755333676289
Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9999847978988279989997502882179977999899999999999999839
Q gi|254780831|r 287 FEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFFV 341 (341)
Q Consensus 287 ~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l~ 341 (341)
++|+++++||||.||+|+.++++.++|.|++..+|+|+++++|.+||++|.+++.
T Consensus 242 ~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~~i~~~~~ 296 (300)
T KOG3022 242 RLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQLS 296 (300)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9998729975750678879997534898347607995699999999999998612
No 3
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=100.00 E-value=0 Score=415.11 Aligned_cols=169 Identities=59% Similarity=1.056 Sum_probs=165.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
||+|+||||||||||+|+|||++|+++|+||+++|+|++|||+|.|
T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~di~gpsip~~---------------------------------- 46 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM---------------------------------- 46 (169)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEE----------------------------------
T ss_conf 9899749998819999999999999879978999713799975501----------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776400122
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNI 256 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~ 256 (341)
|||||.+++++||+.++.|+++||+||||||||||+|+++.|.++.+++|+|||||++|+.|++|+++|++++++
T Consensus 47 -----~rGp~~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i 121 (169)
T cd02037 47 -----WRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred -----EECHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf -----204738999999998525466788999689998707787987505674799946958899999999999997599
Q ss_pred CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCH
Q ss_conf 114455442024587788665124776589999984797898827998
Q gi|254780831|r 257 PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDM 304 (341)
Q Consensus 257 ~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~ 304 (341)
|++|+|||||||.|++|++++++||+++++++++++++++||+||+||
T Consensus 122 ~i~GvVeNMs~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg~IP~dp 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 707999879666079999735278884499999995999898728999
No 4
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=0 Score=378.27 Aligned_cols=243 Identities=42% Similarity=0.681 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 999999999986067634235503222343332223--465420102446665425789999898723577506988224
Q gi|254780831|r 56 QSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNN--LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 56 ~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~--~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
......+........+.......+........-... .+.+++|+|+||||||||||+|+|||.+||+.|+||+++|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD 95 (265)
T COG0489 16 EEIPELLAKALAALLPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDAD 95 (265)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 32023332110135774117888864443201242234566618999758998756899999999999639938999674
Q ss_pred CCCCCCCCEECCCC---CCCCCCCCCCCCCCCCC-EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 67876531000245---63112334457663223-032233343552210001342024789998675213777589974
Q gi|254780831|r 134 VYGPSIPKLLKISG---KVEISDKKFLKPKENYG-IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209 (341)
Q Consensus 134 i~~ps~~~~lg~~~---~~~~~~~~~i~p~~~~g-i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD 209 (341)
+|||++|.|||+++ ......++.+.|+..++ ++.+|++++.+ .+.+|||||.++++.||+.++.|++|||||||
T Consensus 96 ~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~--~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID 173 (265)
T COG0489 96 LRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSILPLGP--VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIID 173 (265)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCC--CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6698635540898655654113787114322026655047883288--99894677633899999999745688889996
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHH
Q ss_conf 55644421000000022340267421443113456667776400122114455442024587788665124776589999
Q gi|254780831|r 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEA 289 (341)
Q Consensus 210 ~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a 289 (341)
||||+||+++++.+..+. ++|+||||+.++..|++|+++++++.+.+++|+|+||++|.|++|+ +|+.+.++
T Consensus 174 ~PP~~g~~d~~i~~~~~~-g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~-------~g~~~~~~ 245 (265)
T COG0489 174 TPPGTGDADATVLQRIPD-GVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG-------EGGGEKYA 245 (265)
T ss_pred CCCCCCHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-------CCCHHHHH
T ss_conf 999864277788751388-5999966773559999999999987499347999668666665557-------88523356
Q ss_pred HHHCCCEEEECCCCHHHHHH
Q ss_conf 98479789882799899975
Q gi|254780831|r 290 EKIGIPFLESVPFDMDVRVL 309 (341)
Q Consensus 290 ~~~~i~~lg~IP~d~~i~~a 309 (341)
++|+ +|+|++|+++.+++.
T Consensus 246 ~~~~-~~~g~~p~~~~~~~~ 264 (265)
T COG0489 246 ERYG-PYLGSIPLDPSAREA 264 (265)
T ss_pred HHHC-CCCCCCCCCHHHHCC
T ss_conf 6511-102668867454413
No 5
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=0 Score=359.05 Aligned_cols=237 Identities=23% Similarity=0.375 Sum_probs=193.2
Q ss_pred CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------C-----CCCC
Q ss_conf 2234654201024466654257899998987235775069882246787653100024563112------3-----3445
Q gi|254780831|r 89 RNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------D-----KKFL 157 (341)
Q Consensus 89 ~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~-----~~~i 157 (341)
...+++.|||+|+||||||||||+|+|||++||+.|+||+++|+|++++|++.+||++++.... . +..+
T Consensus 7 ~~~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i 86 (279)
T CHL00175 7 TIVATMTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQALI 86 (279)
T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEE
T ss_conf 12259886999974899844899999999999978998899957899998753268666666747664078766430134
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCC
Q ss_conf 76632230322333435522100013420247899986752137775899745564442100000002234026742144
Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQ 237 (341)
Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~ 237 (341)
.+....|+.+++.+ ...|+.++....+++++....|.+|||+|||||||+|+..+.. ..+.+++++|||||
T Consensus 87 ~~~~~~~l~ll~~~-------~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~~~~~a--l~aad~viIvttpe 157 (279)
T CHL00175 87 RDKRWPNLSLLPIS-------KNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGIDVGFINA--IAPAKEAIVVTTPE 157 (279)
T ss_pred ECCCCCCEEEEECC-------CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHCCEEEEECCCC
T ss_conf 25777877999789-------7054457419999999999972799999981899888999999--99789069978997
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 31134566677764001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 238 DLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 238 ~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
+.|+.|++|.++++++.+++.+++|+||. +++|.++...++ .+.+++.++++++|.||+|+.++++.++|+|++
T Consensus 158 ~~al~da~~~i~~~~~~~~~~~~lvvN~~---~~~~~~~~~~~~---~~~~~~~l~v~~lg~IP~D~~v~~a~~~G~Pvv 231 (279)
T CHL00175 158 ITAIRDADRVAGLLEANGIYNIKLLVNRV---RPDMIKANDMMS---VRDVQEMLGIPLLGAIPEDENVIISTNRGEPLV 231 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCC---CCCCCCCCCCCC---HHHHHHHHCCCEEEECCCCHHHHHCCCCCEEEE
T ss_conf 89999999999999975998621353356---455435455344---999999719934657678778986130690589
Q ss_pred EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97799989999999999999983
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
.++|+|++|++|.+||++|+.+-
T Consensus 232 ~~~P~S~~a~a~~~iA~~l~~~~ 254 (279)
T CHL00175 232 LKKKLTLSGIAFENAARRLVGKQ 254 (279)
T ss_pred EECCCCHHHHHHHHHHHHHHCCC
T ss_conf 84999999999999999995787
No 6
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=100.00 E-value=0 Score=353.09 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=178.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----CCCCC---CCCCCC-EE
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----34457---663223-03
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----KKFLK---PKENYG-IK 166 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----~~~i~---p~~~~g-i~ 166 (341)
|+|+|+||||||||||+|+|||+|||+.|+||.++||||-+.|+..+||+++.+-+.+ +..+. .-..+| ++
T Consensus 1 r~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~i~DAIY~gp~GnV~ 80 (258)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPEGNVK 80 (258)
T ss_pred CEEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEE
T ss_conf 98899977889861400000778898609768999467667768988446888967522134456100110028898447
Q ss_pred ECCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 22333435522-10001342024789998675213777589974556444210000000223402674214431134566
Q gi|254780831|r 167 IMSMASLVDEN-VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVK 245 (341)
Q Consensus 167 ~~s~g~l~~~~-~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~ 245 (341)
+++.|.-.+.- ++-. .-|++.++... +++||||||+|+|.+-..+ ......++.++|||||-.|++|+.
T Consensus 81 V~PagvSLEg~rKA~~-------~~L~dV~~~i~-~~~D~lLIDAPAGL~~~a~--~Al~~a~elLLVvNPEi~SItDaL 150 (258)
T TIGR01969 81 VIPAGVSLEGLRKADP-------DKLEDVLKEII-DDTDFLLIDAPAGLERDAV--TALAAADELLLVVNPEISSITDAL 150 (258)
T ss_pred EECCCCCHHHCCCCCH-------HHHHHHHHHHH-CCCCEEEEECCCCCCHHHH--HHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 8506122100012683-------33289999872-0437788747898337899--999861866486676544677788
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHH
Q ss_conf 67776400122114455442024587788665124776589999984797898827998999750288217997799989
Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSAT 325 (341)
Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~ 325 (341)
|+...+++++.+++|+|+|+-. .+.+++ ++...+.+ +.+|+||.||.||+||+++..|.|+|.++|+||+
T Consensus 151 K~k~va~~lGt~ilG~vlNRv~------~~~tel-~~~eiE~i---LevPVl~~vPEDP~VR~AAa~G~P~V~~~P~SpA 220 (258)
T TIGR01969 151 KVKIVAEKLGTAILGVVLNRVT------RDKTEL-GREEIEAI---LEVPVLGVVPEDPEVRRAAAFGEPVVVYSPNSPA 220 (258)
T ss_pred HHHHHHHHCCCCEEEEEEEECC------CCCCCC-CHHHHHHH---HCCCEEEEECCCHHHHHHHHCCCCEEEECCCCHH
T ss_conf 9999987608832468996023------666637-88899988---4797389856984344564248536884799878
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780831|r 326 SEIYQEISDRIQQ 338 (341)
Q Consensus 326 a~~~~~iA~~i~~ 338 (341)
|+||.+||++|.-
T Consensus 221 A~A~~eLA~~l~G 233 (258)
T TIGR01969 221 AQAFMELAAELAG 233 (258)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999718
No 7
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=100.00 E-value=1.4e-45 Score=322.66 Aligned_cols=229 Identities=24% Similarity=0.243 Sum_probs=174.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC----CCC--------CCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123----344--------5766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD----KKF--------LKPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~--------i~p~~~~ 163 (341)
|+||| ||||||||||+|+|||+|||++|+||+++|+|++++|++.+||..+++...+ +.. +......
T Consensus 1 r~iai-~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~ 79 (269)
T pfam00142 1 RKIAI-YGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYG 79 (269)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCC
T ss_conf 95899-89997688999999999999879909998458998741444389888847877604677022407450133778
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 3032233343552210001342024789998675213777589974556444--21000000022340267421443113
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
|+++++.+. .+......||+ +...++.+-....|++|||++||||++.. .....+.+. ..+++++|+|||++|+
T Consensus 80 gv~~i~~~~-~e~~~~~~~~~--~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~i~~~-~A~~viiv~t~E~~al 155 (269)
T pfam00142 80 GIRCVESGG-PEPGVGCAGRG--VITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREG-KAQEVYIVTSGEMMAL 155 (269)
T ss_pred CCEEEECCC-CCCCCCCCHHH--HHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCCHHHC-CCCEEEEEECCCHHHH
T ss_conf 726886899-86563211078--9999999998210212888985336740243400533443-5887999828947899
Q ss_pred HHHHHHHHHH----HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 4566677764----001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 242 IDVKRAISMY----QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 242 ~da~r~~~~~----~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
.|+.+.+... +..++++.|+|.||. ...++++..++++++++++++|.||+|+.++++.++|+|++
T Consensus 156 ~~a~~l~~~i~~~~~~~~~~i~giv~n~~----------~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v~eA~~~g~pv~ 225 (269)
T pfam00142 156 YAANNICKGILKYAKSGGVRLGGLICNSR----------KVDDERELIDAFAEALGTQMIHFVPRDNIVQKAELNKQTVI 225 (269)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCC----------CCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEE
T ss_conf 99999999999985057962789982686----------54115799999999819947997799826875423498179
Q ss_pred EECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9779998999999999999998
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
.++|+|++|++|++||++|++.
T Consensus 226 ~~~P~S~~A~ay~~LA~~il~~ 247 (269)
T pfam00142 226 EYAPTCNQAKEYRELARKIIEN 247 (269)
T ss_pred EECCCCHHHHHHHHHHHHHHHC
T ss_conf 9899998999999999999858
No 8
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=7e-45 Score=319.20 Aligned_cols=230 Identities=19% Similarity=0.310 Sum_probs=175.2
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------CCC----CCCCCC-C
Q ss_conf 54201024466654257899998987235775069882246787653100024563112------334----457663-2
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------DKK----FLKPKE-N 162 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~~~----~i~p~~-~ 162 (341)
+.|||||+||||||||||+|+|||++||++|+||+++|+|++++|++.+||++.++... .+. .+.+.. .
T Consensus 1 M~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHEEECCCC
T ss_conf 97499997899984189999999999997799689996899998887345767766666898836998588905446876
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 23032233343552210001342024789998675213777589974556444210000000223402674214431134
Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341)
Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341)
.++.+++... ..++..+....+++++.+..|.+|||+|||||||+|+. ++....+.|.+++|+|||++|+.
T Consensus 81 ~~l~ilpa~~-------~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~--~~~al~aad~vlvv~tpe~~al~ 151 (270)
T PRK10818 81 ENLYILPASQ-------TRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEVSSVR 151 (270)
T ss_pred CCEEEECCCC-------HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCEEEEECCCCHHHHH
T ss_conf 9979979996-------47675545999999999777659989998899986689--99999858968997389788998
Q ss_pred HHHHHHHHHHCCCC-------CH-HHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC
Q ss_conf 56667776400122-------11-44554420245877886651247765899999847978988279989997502882
Q gi|254780831|r 243 DVKRAISMYQKMNI-------PI-IGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341)
Q Consensus 243 da~r~~~~~~~~~~-------~i-~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341)
|++|.+++++.... ++ .+++.||- . +.+..+... ...+++.+.++++++|.||+|+++++|.+.|+
T Consensus 152 da~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~lg~IP~d~~v~eA~~~G~ 225 (270)
T PRK10818 152 DSDRILGILASKSRRAENGEEPIKEHLLLTRY--N-PGRVSRGDM---LSMEDVLEILRIKLVGVIPEDQSVLRASNQGE 225 (270)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEE--C-HHHCCHHHH---CCHHHHHHHCCCEEEEECCCCHHHHHHCCCCC
T ss_conf 79999999998777653352010012588424--5-312321100---12999997328806998079746988522799
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 1799779998999999999999998
Q gi|254780831|r 315 PIVVHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 315 P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
|++ .+|+|++|++|++||++++.+
T Consensus 226 Pvv-~~p~s~~a~Ay~~lA~~ll~~ 249 (270)
T PRK10818 226 PVI-LDINADAGKAYADTVERLLGE 249 (270)
T ss_pred CEE-ECCCCHHHHHHHHHHHHHHCC
T ss_conf 879-899998999999999999568
No 9
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=100.00 E-value=8.1e-44 Score=312.02 Aligned_cols=227 Identities=26% Similarity=0.442 Sum_probs=169.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC-----C------CCCCCCCCCCC
Q ss_conf 201024466654257899998987235775069882246787653100024563112-----3------34457663223
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS-----D------KKFLKPKENYG 164 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~-----~------~~~i~p~~~~g 164 (341)
+||.||||||||||||+|+||+.|||++|+||+|+|+|++--|++.+||+|++.-+. + ...+.--...+
T Consensus 2 ~viViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiGLRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~N 81 (272)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLEN 81 (272)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 58999817889773589899999999619828999547570345777423103545355432484211001001267523
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 03223334355221000134202478999867521377758997455644421000000022340267421443113456
Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341)
+.+++.....+++. +-+..| ...+.+|..+ +.|||+|||||||+- +=--....+.+++|||||||-+|+.||
T Consensus 82 L~LLpAsQ~rdK~~--~~~E~~-~~lv~~Lk~~---~~FDYviIDcPAGIE--~GF~nAv~~Ad~AiVVttPEvsavRDA 153 (272)
T TIGR01968 82 LYLLPASQTRDKDA--VTPEQM-KKLVNELKEE---EHFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDA 153 (272)
T ss_pred HHHHHHHHCCCCCC--CCHHHH-HHHHHHHHHC---CCCEEEEEECCCCHH--HHHHHHHHHCCEEEEEECCCCCCHHHH
T ss_conf 56636530236134--697789-9999998543---793079973787743--568998752683589877874510025
Q ss_pred HHHHHHHHCCC-CCH------HHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 66777640012-211------44554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 245 KRAISMYQKMN-IPI------IGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 245 ~r~~~~~~~~~-~~i------~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
=|.+-+++..+ ..- .-+|+|. .-++.-++.+.. ..+.+.+.|++|++|.||.|..|-.|+++|.|++
T Consensus 154 DRvIGlLea~~~i~~~GEE~~~~LivNR---~rP~mV~~G~Ml---si~Dv~~~L~i~LiGviPeD~~iI~stN~GEP~v 227 (272)
T TIGR01968 154 DRVIGLLEAKGNIEEKGEEVKIKLIVNR---LRPEMVKKGDML---SIDDVLEILSIPLIGVIPEDEEIIVSTNKGEPVV 227 (272)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEEEEEC---CCHHHHHCCCCC---CHHHHHHHCCCCCEEEECCCCCEEEEECCCEEEE
T ss_conf 5675242124554457764643477851---564774168982---7899998608861686329986576645614354
Q ss_pred EECCC-CHHHHHHHHHHHHHH
Q ss_conf 97799-989999999999999
Q gi|254780831|r 318 VHNMN-SATSEIYQEISDRIQ 337 (341)
Q Consensus 318 ~~~p~-s~~a~~~~~iA~~i~ 337 (341)
+.. + |.+++||+++|+||.
T Consensus 228 l~~-~L~~~g~Af~~~ArRi~ 247 (272)
T TIGR01968 228 LNK-KLSRAGKAFENIARRIL 247 (272)
T ss_pred ECC-CCCHHHHHHHHHHHHHC
T ss_conf 460-02616788999987534
No 10
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=6.6e-42 Score=299.29 Aligned_cols=228 Identities=25% Similarity=0.285 Sum_probs=169.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCC---CCCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123--------344---57663223
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKF---LKPKENYG 164 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~---i~p~~~~g 164 (341)
|+|||+ |||||||||+|+|||++||++|+||+++|+|++++|.+.|+|..+.+...+ ... +.....+|
T Consensus 2 r~Iai~-GKGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l~g~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~g 80 (270)
T cd02040 2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGG 80 (270)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHEECCCCC
T ss_conf 589997-9985778999999999999879949998657998513465299888828998875277765388961337677
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH----CCCCCCEEEEECCCCCH
Q ss_conf 03223334355221000134202478999867521377758997455644421000000----02234026742144311
Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ----KIPLSGVVIVSTPQDLA 240 (341)
Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~----~~~~~~~iiVttP~~~s 240 (341)
+++++.|.- .......|||++....+.+.+ ...|.+|||+|+|| +||+.+.-.. ....+++++|+|||++|
T Consensus 81 v~~ip~~~~-~~~~~~~gr~~~~~~~ll~~l-~~~~~~~D~iliD~---lg~~~~~~~~~~i~~~~ad~viiv~t~e~~a 155 (270)
T cd02040 81 IKCVESGGP-EPGVGCAGRGVITAINLLEEL-GAYEDDLDFVIYDV---LGDVVCGGFAMPIREGKAQEIYIVTSGEMMA 155 (270)
T ss_pred CEEEECCCC-CCCCHHCCCCHHHHHHHHHHH-HHHHCCCCEEEEEC---CCCCCCCHHHCHHHHCCCCEEEEECCCCHHH
T ss_conf 064105996-435121240078899999985-43440698899823---5633321232303553388799962881899
Q ss_pred HHHHH---HHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCE
Q ss_conf 34566---6777640012-2114455442024587788665124776589999984797898827998999750288217
Q gi|254780831|r 241 LIDVK---RAISMYQKMN-IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPI 316 (341)
Q Consensus 241 ~~da~---r~~~~~~~~~-~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~ 316 (341)
+.++. |++.++++.. ..+.|+|.|| ++..++++..+.++++++++++|.||+|.+++++.++|+|+
T Consensus 156 l~~~~~l~k~i~~~~~~~~~~l~gvv~~~----------~~~~~~~~~~~~~~~~~~~~~l~~IP~d~~v~EA~~~g~pi 225 (270)
T cd02040 156 LYAANNICKGILKYAKSGGVRLGGLICNS----------RNTDREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTV 225 (270)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECC----------CCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCEE
T ss_conf 99999999999999834697479998378----------66513789999999985995287779971787513429707
Q ss_pred EEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 99779998999999999999998
Q gi|254780831|r 317 VVHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 317 v~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
+.++|+|++|++|++||+++++.
T Consensus 226 ~~~~P~S~~A~ay~~LA~eii~~ 248 (270)
T cd02040 226 IEYDPESKQADEYRELARKIVEN 248 (270)
T ss_pred EEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99798998999999999999848
No 11
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=100.00 E-value=2.2e-39 Score=282.49 Aligned_cols=178 Identities=28% Similarity=0.350 Sum_probs=137.5
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 10244666542578999989872357750698822467876531000245631123344576632230322333435522
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341)
|||+||||||||||+|+|||.++ +||+++|+|+++||+|.+||.+......................+.|
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g------ 71 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCG------ 71 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCC------
T ss_conf 89995899860999999999974----28719994189985777718765632122304653351506653235------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 10001342024789998675213777589974556444210000000223402674214431134566677764001221
Q gi|254780831|r 178 VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIP 257 (341)
Q Consensus 178 ~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~ 257 (341)
+.|++.+...++++....|++|||+|||||||+|+..++.. ...|.+++||||+++|+.|++|+++|++++++|
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~~~D~viiD~Ppg~~~~~~~al--~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~ 145 (179)
T cd03110 72 ----LCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASL--TGADAALLVTEPTPSGLHDLERAVELVRHFGIP 145 (179)
T ss_pred ----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ----17688999999999986443799899818999757899999--739949998199478999999999999982997
Q ss_pred HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC
Q ss_conf 14455442024587788665124776589999984797898827
Q gi|254780831|r 258 IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341)
Q Consensus 258 i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341)
+ |+|+||+.+ +++ +.+..+++++++++|+||.||
T Consensus 146 ~-gvV~Nr~~~-~~~--------~~~~i~~~~~~~~vp~LG~iP 179 (179)
T cd03110 146 V-GVVINKYDL-NDE--------IAEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred E-EEEEECCCC-CCC--------CHHHHHHHHHHHCCCEEEECC
T ss_conf 8-999968878-876--------348999999980999898387
No 12
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=100.00 E-value=1.9e-38 Score=276.18 Aligned_cols=179 Identities=32% Similarity=0.516 Sum_probs=150.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
||||+||||||||||+|+|||++||+.|+||+++|+|++++|++.++|...++...
T Consensus 1 iIav~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D~~~~~l~~~~~~~~~~~~~------------------------ 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYT------------------------ 56 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCH------------------------
T ss_conf 98997399987099999999999997799189995899999836661765566531------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776400122
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNI 256 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~ 256 (341)
+.|+.++ ||+|||||||+++..++. ....|.+++|++|++.|+.++.|.++++++.+.
T Consensus 57 ------------------~~~vl~g--D~viiD~ppg~~~~~~~~--l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 ------------------LHDVLAG--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred ------------------HHCCCCC--CEEEEECCCCCCHHHHHH--HHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf ------------------3112669--999997999988899999--984681256378858899999999999982599
Q ss_pred CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHH
Q ss_conf 1144554420245877886651247765899999847978988279989997502882179977999899999
Q gi|254780831|r 257 PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329 (341)
Q Consensus 257 ~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~ 329 (341)
+.+|+|+||.. ++.. +.....+++++.++.+++|.||+|.++.++...|+|++.++|+|++|++|
T Consensus 115 ~~~~vv~Nr~~---~~~~-----~~~~~~~~~~~~l~~~vlg~IP~d~~v~eA~~~g~Pv~~~~P~s~aA~ay 179 (179)
T cd02036 115 KVVGVIVNRVR---PDMV-----EGGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred CEEEEEECCCC---CCCC-----CHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEEEECCCCHHHHCC
T ss_conf 64699984546---7666-----36779999998559967988779889999876795389879999566309
No 13
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=3.6e-36 Score=261.04 Aligned_cols=232 Identities=17% Similarity=0.161 Sum_probs=166.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------CCCC---CCCCCCCCEE
Q ss_conf 201024466654257899998987235775069882246787653100024563112------3344---5766322303
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------DKKF---LKPKENYGIK 166 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~~~~---i~p~~~~gi~ 166 (341)
|||+|+|+||||||||+|+|||++|++.|+||+++|+|.+| ++...||.+...... .+.. .......|+.
T Consensus 2 kiIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ~-~l~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T TIGR03371 2 KVIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLAGEDWRAAAYRSSDGVL 80 (246)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHCCCCCCCCCCHHHHHHCCCCHHHHHEECCCCEE
T ss_conf 39999759998549999999999999689978999759998-50322488875345699998279988895255789828
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 22333435522100013420247899986752137775899745564442100000002234026742144311345666
Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKR 246 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r 246 (341)
+++.|.+.......... . -...+.+++....|..+||+|||||||.|.. +..-..+.|.+++|++|++.|+....+
T Consensus 81 ~ip~~~~~~~~~~~~~~-~-~~~~l~~~l~~l~~~~~D~viiD~pp~l~~~--~~~al~aad~vlipv~~~~~s~~~~~~ 156 (246)
T TIGR03371 81 FLPYGTLSADEREAYQA-H-DAGWLARLLQQLDLAARDWVLIDLPRGPSPI--TDQALAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred EEECCCCCHHHHHHHCC-C-CHHHHHHHHHHHCCCCCCEEEEECCCCCCHH--HHHHHHHCCEEEEEECCCHHHHHHHHH
T ss_conf 97089847778987604-4-7899999998630367988999489987499--999999889479981899899999999
Q ss_pred HHHHHHCCCC--CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCCCHHHHHHHCCCCCEEEECCCC
Q ss_conf 7776400122--11445544202458778866512477658999998479789-88279989997502882179977999
Q gi|254780831|r 247 AISMYQKMNI--PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPFDMDVRVLSDLGIPIVVHNMNS 323 (341)
Q Consensus 247 ~~~~~~~~~~--~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~d~~i~~a~~~g~P~v~~~p~s 323 (341)
....+.+... ..+++|.||- ..+... .+...+.+.+.++.+++ +.||.+.++.+|...|.|+..++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~iv~n~~-------~~~~~~-~~~~~~~l~~~~~~~~~~~~I~~~~~v~eA~~~g~pv~~~~p~S 228 (246)
T TIGR03371 157 LALALLARSVPPDGIHYLINQF-------QPARQL-SRDVRAVLRATLGSRLLPMFVHRDEAVAEALARGTPVFNYAPHS 228 (246)
T ss_pred HHHHHHHHCCCCCCEEEEEECC-------CCCCHH-HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCC
T ss_conf 9999998427767517886302-------640158-99999999997498816226899779999997699826699589
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999983
Q gi|254780831|r 324 ATSEIYQEISDRIQQFF 340 (341)
Q Consensus 324 ~~a~~~~~iA~~i~~~l 340 (341)
++|++|++||+.|+++|
T Consensus 229 ~aa~~y~~LA~~ll~~l 245 (246)
T TIGR03371 229 QAAHDIRTLAFWLLTKL 245 (246)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999963
No 14
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=4.4e-36 Score=260.43 Aligned_cols=228 Identities=26% Similarity=0.398 Sum_probs=166.9
Q ss_pred CCCEECCCCCCCCCHHHHHHHH-HHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC-CCC----CCCC----CCCCCCC
Q ss_conf 4201024466654257899998-9872357750698822467876531000245631-123----3445----7663223
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNI-ACALKNKGKNVAILDADVYGPSIPKLLKISGKVE-ISD----KKFL----KPKENYG 164 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nL-a~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~-~~~----~~~i----~p~~~~g 164 (341)
.++|||+||||||||||+|+|| |+.++..|++|+++|+|++++|++.+||+++.+. ..+ +..+ .....+|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCCC
T ss_conf 78999984588756898998699999964897699996588887288885888885509999707787768023157689
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 03223334355221000134202478999867521377758997455644421000000022340267421443113456
Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341)
+++++.+.-.+....+- .......+.++ . ..+||+++|||||++...+.. ....+++|+||||++.|++||
T Consensus 82 l~vipg~~~~~~~~~~~--~~~~~~~~~~l-~----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A 152 (262)
T COG0455 82 LYVLPGGSGLEDLAKLD--PEDLEDVIKEL-E----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDA 152 (262)
T ss_pred EEEEECCCCHHHHHHCC--HHHHHHHHHHH-H----HCCCEEEEECCCCCCHHHHHH--HHHCCCEEEEECCCCCHHHHH
T ss_conf 89960788768886169--88899999998-7----529999996899966888999--873681799927985208999
Q ss_pred HHHHHHHHCCCCCHHH--HHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCC
Q ss_conf 6677764001221144--55442024587788665124776589999984797898827998999750288217997799
Q gi|254780831|r 245 KRAISMYQKMNIPIIG--MIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMN 322 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~G--iV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~ 322 (341)
++++++.++.+.+..+ +|+||.. ...+....| ....+.+ ...+.+..+|+++.++++...|.|++..+|+
T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~----~~~e~~~~~--~~~~~~~--~~~~~~~~i~~~~~v~~a~~~g~p~~~~~p~ 224 (262)
T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVR----STKEGVDVA--ALLIQVV--KQVPVLQVIPFDPEVRRALAEGKPIVLYSPN 224 (262)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECC----CCCCHHHHH--HHHHHHH--HHCCCEEEECCCHHHHHHHHCCCCEEEECCC
T ss_conf 9999999973876433158997036----666546789--9999999--7077434715675789986249867972889
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998
Q gi|254780831|r 323 SATSEIYQEISDRIQQF 339 (341)
Q Consensus 323 s~~a~~~~~iA~~i~~~ 339 (341)
|+++++|.+||.++.+.
T Consensus 225 s~as~ai~~lA~~l~~~ 241 (262)
T COG0455 225 SKASQAIKELAAKLAGL 241 (262)
T ss_pred CHHHHHHHHHHHHHHCC
T ss_conf 78999999999998605
No 15
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=4.5e-35 Score=253.74 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=173.2
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCCCCCCCCCE
Q ss_conf 42010244666542578999989872357750698822467876531000245631123---------344576632230
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFLKPKENYGI 165 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i~p~~~~gi 165 (341)
-|-|||+ |||||||||+|+|||.+||+ |+||+++|||..+.|...++|-. .++..+ ...+......|+
T Consensus 2 m~~iAiy-GKGGIGKSTt~~NlaaalA~-g~rVl~igcDpk~dst~~L~G~~-~ptvl~~l~~~~~~~~~dvv~~g~~gi 78 (264)
T PRK13231 2 LKKIAIY-GKGGIGKSTTVSNMAAAYSS-DNSTLVIGCDPKADTTRTLVGKR-IPTVLDTLKDNRQPELEDIIYEGYNNT 78 (264)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHCCC-CCCHHHHHHHCCCCCHHHHEEECCCCE
T ss_conf 4289997-89854788899999999987-99779985688850246761999-883889863127777656312178984
Q ss_pred EECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHH-HCCCCCCEEEEECCCCCHHHH
Q ss_conf 32233343552210001342024-7899986752137775899745564442100000-002234026742144311345
Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQ-SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIA-QKIPLSGVVIVSTPQDLALID 243 (341)
Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~-~~~~~~~~iiVttP~~~s~~d 243 (341)
..+..|. .++...-.|||.+.. ..++++ ++.|.++||+++|++.+...-.+++- +.-..+++++||+||..|+.+
T Consensus 79 ~cvesGg-pepg~gcagrgi~~~~~lLe~~--~~~~~~~D~vl~Dvlgdvvcggfa~Pir~~~Adev~IVts~e~msLya 155 (264)
T PRK13231 79 LCVESGG-PEPGVGCAGRGVIVAMNLLEKL--GVFDNDPDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred EEEECCC-CCCCCCCCCCHHHHHHHHHHHH--CCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHH
T ss_conf 9973799-8877665652176898999872--642247987999435872056670455426698899994785899999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCC
Q ss_conf 66677764001221144554420245877886651247765899999847978988279989997502882179977999
Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNS 323 (341)
Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s 323 (341)
|.+.....++++.++.|+|.|+ .++... .+.++++++++|+++++.||.|..|+++..+|+|++.++|+|
T Consensus 156 AnnI~~~i~~~~~rl~GiI~N~-----r~~~~e-----~~iv~~fa~~~g~~vl~~IPr~~~V~~ae~~~~tVie~~P~S 225 (264)
T PRK13231 156 ANNIAKGIKKLKGKLGGIICNC-----RNVKNE-----VEIVSEFASLIGSRIIGIIPRSNLVQESELKASTVVETFPES 225 (264)
T ss_pred HHHHHHHHHHHCCCCCEEEEEC-----CCCCCH-----HHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999999546442089606-----898877-----999999999719968996689478888886297589979898
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999998
Q gi|254780831|r 324 ATSEIYQEISDRIQQF 339 (341)
Q Consensus 324 ~~a~~~~~iA~~i~~~ 339 (341)
+.|++|++||++|++-
T Consensus 226 ~~A~~Yr~LA~~I~~~ 241 (264)
T PRK13231 226 SQASIYSELANNIMNN 241 (264)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8999999999999858
No 16
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=4.8e-35 Score=253.55 Aligned_cols=231 Identities=21% Similarity=0.221 Sum_probs=164.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----------------CC---
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----------------34---
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----------------KK--- 155 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----------------~~--- 155 (341)
|-|||+ |||||||||+|+|||+|||+.|+||+++|+|.+|.+...+.+-...+...+ +.
T Consensus 2 ~~ia~y-GKGGVGKTTTavNLAaALA~~GkkVLlID~DPqgnaTs~L~~g~~~~tv~d~~~~~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK13230 2 KQIAFY-GKGGIGKSTTVCNLAAALSKSGKKVIVVGCDPKHDCTSNLRGGEDIPTVLDVLREKGIDKLGIETIIRENLLK 80 (292)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCC
T ss_conf 679991-7998578989999999999879959997767977542530159877529999986175422233320324465
Q ss_pred --CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHH-HCCCCCCEEE
Q ss_conf --4576632230322333435522100013420247899986752137775899745564442100000-0022340267
Q gi|254780831|r 156 --FLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIA-QKIPLSGVVI 232 (341)
Q Consensus 156 --~i~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~-~~~~~~~~ii 232 (341)
.+.+....|+..+..|. ........|||.+....+.+.+....|.++||+++|+++....-.+++. +....+.+++
T Consensus 81 ~~dii~~~~~gv~~ve~g~-~~~g~g~~gr~~~~~~~ll~~~~~~~~~~~D~vl~D~lg~~~~~g~~~p~~~~~Ad~VlI 159 (292)
T PRK13230 81 KEDIIYEGFNGIYCVEAGG-PKPGYGCAGRGVIVVIDLLKKMNVFEELGVDVVLYDVLGDVVCGGFAMPLRMGLADQIYV 159 (292)
T ss_pred HHHEEECCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCCCCCCHHCCCCEEEE
T ss_conf 2322222678627861689-876641131478999999998131233087657503435566464215620201898999
Q ss_pred EECCCCCHHHHH---HHHHHHHHC-CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHH
Q ss_conf 421443113456---667776400-1221144554420245877886651247765899999847978988279989997
Q gi|254780831|r 233 VSTPQDLALIDV---KRAISMYQK-MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRV 308 (341)
Q Consensus 233 VttP~~~s~~da---~r~~~~~~~-~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~ 308 (341)
|+.++-.|+..+ .|+++++++ .+.++.|+|.|| |..++..+..++++++++.++++.||++.++++
T Consensus 160 p~q~E~~ALeg~~~l~~tI~~~~~~~~~~l~Giv~n~----------r~~l~~~~vv~e~~~~fg~~v~~~IPrnv~l~E 229 (292)
T PRK13230 160 VTSSDYMALYAANNICKGIKQFAKRGGSTLGGIIYNV----------RGSMDAFDIVSEFASKLNTNIIGKVPNSNIINE 229 (292)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC----------CCCCCHHHHHHHHHHHHCCEEEEECCCCCHHHH
T ss_conf 7273899999999999999999845797579999708----------988647899999999829915996799606341
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 502882179977999899999999999999
Q gi|254780831|r 309 LSDLGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 309 a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
|...|+|++.++|+|+.|++|++||++|++
T Consensus 230 Aps~G~pvi~ydP~S~gA~aY~~LA~ei~e 259 (292)
T PRK13230 230 AEIDGKTAIEYAPDSEISKIYRELAEKIYE 259 (292)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 430498248979899789999999999996
No 17
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-34 Score=249.27 Aligned_cols=227 Identities=23% Similarity=0.380 Sum_probs=161.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC------CC-----CCCCCCCC
Q ss_conf 42010244666542578999989872357750698822467876531000245631123------34-----45766322
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD------KK-----FLKPKENY 163 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~------~~-----~i~p~~~~ 163 (341)
.++|.|+||||||||||+|+||+.+||++|+||+++|+|+.-.|++.+||.+.+.-+.- +. .+..-...
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~ 81 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLE 81 (272)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCCCCCC
T ss_conf 64999944888767431067789999973985999966767204466643420156540134447663656764035678
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 30322333435522100013420247899986752137775899745564442100000002234026742144311345
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALID 243 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~d 243 (341)
++.+++.....++|.-. +.. ..+.++++ ++ .+|||+++|+|+|+- +-......+.|++++||||+.+|+.|
T Consensus 82 nL~lLPAsQtrdKdalt--~E~-v~~vv~eL-~~---~~fDyIi~DsPAGIE--~G~~~A~~~Ad~AiVVtnPEvSsVRD 152 (272)
T COG2894 82 NLFLLPASQTRDKDALT--PEG-VKKVVNEL-KA---MDFDYIIIDSPAGIE--QGFKNAVYFADEAIVVTNPEVSSVRD 152 (272)
T ss_pred CEEECCCCCCCCCCCCC--HHH-HHHHHHHH-HH---CCCCEEEECCCCHHH--HHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 52661443236722279--999-99999999-76---699889964840677--88886541026379974887554234
Q ss_pred HHHHHHHHHCCCC-------CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCE
Q ss_conf 6667776400122-------114455442024587788665124776589999984797898827998999750288217
Q gi|254780831|r 244 VKRAISMYQKMNI-------PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPI 316 (341)
Q Consensus 244 a~r~~~~~~~~~~-------~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~ 316 (341)
+-|.+-+++.... |-.-+++|. ..++.-++-+.. ..+.+.+-+.+|++|.||.|+.+..++++|.|+
T Consensus 153 sDRiiGlLesk~~rae~~~~~~~~llvnR---~~p~~v~~GeMl---sv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv 226 (272)
T COG2894 153 SDRIIGLLESKSRRAEIGEEPKEHLLLNR---YRPEMVKRGEML---SVEDVLEILSIPLIGVIPEDQDVLRASNKGEPV 226 (272)
T ss_pred CHHHEEEHHCCCCHHHCCCCCCCEEEEEC---CCHHHHCCCCCC---CHHHHHHHHCCCEEEEECCCHHHEEECCCCCCE
T ss_conf 11220201214542330776663489971---688881157725---399999974774477604853330004788876
Q ss_pred EEECCCCHHHHHHHHHHHHHH
Q ss_conf 997799989999999999999
Q gi|254780831|r 317 VVHNMNSATSEIYQEISDRIQ 337 (341)
Q Consensus 317 v~~~p~s~~a~~~~~iA~~i~ 337 (341)
++. +++.+++||+++|++|.
T Consensus 227 ~l~-~~~~a~~Ay~d~arRll 246 (272)
T COG2894 227 ILD-DNSDAGKAYRDIARRLL 246 (272)
T ss_pred EEC-CCCHHHHHHHHHHHHHH
T ss_conf 757-87517799999999970
No 18
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.6e-33 Score=242.01 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=163.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------CCCCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233-----------4457663223
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------KFLKPKENYG 164 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------~~i~p~~~~g 164 (341)
|-|||+ |||||||||+|+|||+|||++|+||++||||..+-|...++|-..++...+. ..+......|
T Consensus 2 ~~iaiy-GKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~g 80 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGD 80 (273)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf 579997-9986658878999999999779969998978844277788589988879999986185656366615428897
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCCCCH
Q ss_conf 03223334355221000134202478999867521377758997455644421000-00---002234026742144311
Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQDLA 240 (341)
Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~~~s 240 (341)
++.+..|- ..+.....+||-...-.+.+.+. ..+.++||+++|++.+ +... ++ +.-..+++++||+++..|
T Consensus 81 v~cve~gg-p~~g~gcagrgii~~~~lle~l~-~~~~~~Dyvl~Dvlgd---vvcggfa~P~~~~~A~evlIVts~E~~s 155 (273)
T PRK13232 81 IKCVESGG-PEPGVGCAGRGIITSIGLLENLG-AYTDDLDYVFYDVLGD---VVCGGFAMPIREGKAKEIYIVASGELMA 155 (273)
T ss_pred EEEEECCC-CCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 38986899-87676545304788888999708-3214798899941473---3236531442016576899980760888
Q ss_pred HHHHH---HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 34566---677764001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 241 LIDVK---RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 241 ~~da~---r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
+..+. |++.-+.+.+.++-|+|.|+.. ..+ .+...++++++++.++++.||.|..++++..+|+|++
T Consensus 156 lyaannI~k~i~~~~~~~~rl~GiI~n~r~----~~~------~~e~v~~fa~~~g~~vi~~IPr~~~v~~A~~~g~tvi 225 (273)
T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRN----VDG------ERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVI 225 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCC----CCC------HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEE
T ss_conf 999999999999996218850148850557----763------8999999999719966997899778876487298358
Q ss_pred EECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9779998999999999999998
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
.++|+|+.|++|++||++|++.
T Consensus 226 e~~P~S~~A~aY~~LA~~I~~~ 247 (273)
T PRK13232 226 DFDPESNQAKEYLTLAHNVQNN 247 (273)
T ss_pred EECCCCHHHHHHHHHHHHHHHC
T ss_conf 9799997999999999999858
No 19
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=100.00 E-value=5.9e-32 Score=232.93 Aligned_cols=225 Identities=29% Similarity=0.441 Sum_probs=162.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC----------CCCCCCC---------
Q ss_conf 201024466654257899998987235775069882246787653100024563----------1123344---------
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV----------EISDKKF--------- 156 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~----------~~~~~~~--------- 156 (341)
..|||+|||||+||||+|+|||..|+.. ||+.|+|+|+-.||.|.+||.+... ....++.
T Consensus 2 m~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~v 80 (284)
T COG1149 2 MQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAEV 80 (284)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCHHHCCCCCCHHHH
T ss_conf 2799963688777022899999983665-224777657789986167445011356778750460375774301726876
Q ss_pred ---------------CCCCCCCCE--------------EECCCCCCC----CCCCCCCCC----C-CCHHHHHHHHHHHH
Q ss_conf ---------------576632230--------------322333435----522100013----4-20247899986752
Q gi|254780831|r 157 ---------------LKPKENYGI--------------KIMSMASLV----DENVAMIWR----G-PMVQSAIMHMLHNV 198 (341)
Q Consensus 157 ---------------i~p~~~~gi--------------~~~s~g~l~----~~~~~~~~r----g-~~~~~~l~~~l~~~ 198 (341)
+.|...+|- +-.++|.+. +.+.+++|- | +...+.++.+.+..
T Consensus 81 C~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~~~~~g~~li~g~l~vGe~~s~~lV~~~kk~a 160 (284)
T COG1149 81 CRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA 160 (284)
T ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 78880897378860028020267663332478765554320003899987689963688744678444513789998755
Q ss_pred CCCC-CCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEE
Q ss_conf 1377-758997455644421000000022340267421443113456667776400122114455442024587788665
Q gi|254780831|r 199 VWGQ-LDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKY 277 (341)
Q Consensus 199 ~w~~-~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~ 277 (341)
. + .|++|||+|||+|.-.++. ....|-+++||.|.|.+++|.+|++++.+.+++| .++|+|. +
T Consensus 161 ~--E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr-----------~ 224 (284)
T COG1149 161 K--ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINR-----------Y 224 (284)
T ss_pred H--HHCCEEEEECCCCCCCHHHHH--HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEC-----------C
T ss_conf 6--532125885799789717776--4168779998168852366899999999983995-4999966-----------7
Q ss_pred ECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 124776589999984797898827998999750288217997799989999999999999983
Q gi|254780831|r 278 DLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 278 ~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
++... ..++++++.++|++|.||+|..+.++..+|.|++. |+++.+.++..+++++++++
T Consensus 225 ~~g~s-~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~~~ 284 (284)
T COG1149 225 NLGDS-EIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKEFI 284 (284)
T ss_pred CCCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHCCC
T ss_conf 77720-89998887399726878864258999857885313--55268899999999987029
No 20
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.98 E-value=1e-31 Score=231.34 Aligned_cols=227 Identities=21% Similarity=0.223 Sum_probs=158.6
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCEECCCCCCCCCCC------CC-----CCCCC
Q ss_conf 54201024466654257899998987235-77506988224678765310002456311233------44-----57663
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKN-KGKNVAILDADVYGPSIPKLLKISGKVEISDK------KF-----LKPKE 161 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~-~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~------~~-----i~p~~ 161 (341)
+.|.|||+ |||||||||+|+|||+|||+ .|+||+++|||..+-|...++|-...++..+- .. +....
T Consensus 1 m~~~iaiy-GKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCC
T ss_conf 97389998-99854465459999999996479889997978876136776089878839999986288755388887537
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCH-HHH---CCCCCCEEEEEC
Q ss_conf 2230322333435522100013420247899986752--1377758997455644421000-000---022340267421
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV--VWGQLDFLLIDMPPGTGDAHLT-IAQ---KIPLSGVVIVST 235 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~--~w~~~D~liiD~ppG~gd~~ls-l~~---~~~~~~~iiVtt 235 (341)
..|+..+..|- ..+...-..||-... .+++.+. ...++||+++|++.. +... ++. .-..+++++||+
T Consensus 80 ~~gv~cVEaGg-p~pG~gcagrgii~~---~~lle~~~~~~~~~D~Vl~DvLGd---VvcGgFa~Pir~~~AdeV~IVts 152 (275)
T PRK13233 80 FKGIRCVESGG-PEPGVGCAGRGVITA---ITLMEEHGAYEDDLDFVFFDVLGD---VVCGGFAMPIRDGKAQEVYIVAS 152 (275)
T ss_pred CCCCEEEECCC-CCCCCCCCCCCHHHH---HHHHHHHCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 89857986899-986665576312358---888998097434688899841561---10555103431366888999946
Q ss_pred CCCCHHHHHHHHH---HH-HHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHC
Q ss_conf 4431134566677---76-4001221144554420245877886651247765899999847978988279989997502
Q gi|254780831|r 236 PQDLALIDVKRAI---SM-YQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSD 311 (341)
Q Consensus 236 P~~~s~~da~r~~---~~-~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~ 311 (341)
++..|+.+|.+.. .- .+.-+.++.|+|.|.. .. . ......++++++++.++++.||.|..|+++..
T Consensus 153 ~E~msL~aannI~~~l~~~~~~~~~~l~Gii~N~r----~~-~-----~e~~~v~~fa~~ig~~vi~~IPr~~~V~~Ae~ 222 (275)
T PRK13233 153 GEMMALYAANNICKGLVKYAEQSGVRLGGIICNSR----NV-D-----GELELLEEFTDAIGTQLIHFVPRDNIVQKAEF 222 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC----CC-C-----CHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
T ss_conf 83799999999999999985058963899997178----88-6-----07999999999859957997789778887787
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 882179977999899999999999999
Q gi|254780831|r 312 LGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 312 ~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
+|++++.++|+|+.|++|++||++|++
T Consensus 223 ~~~tVie~~P~S~~A~~Y~~LAk~I~~ 249 (275)
T PRK13233 223 NKKTVVEFDPTCNQAHEYKELARKIIE 249 (275)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 397679989999799999999999985
No 21
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=4.8e-31 Score=226.87 Aligned_cols=227 Identities=20% Similarity=0.199 Sum_probs=156.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-------CCCCCCC---CCCCE
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-------3445766---32230
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-------KKFLKPK---ENYGI 165 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-------~~~i~p~---~~~gi 165 (341)
|-|||. |||||||||+|+|||+|||++|+||+++|||..+-|...++|-...+...+ +-.+..+ ...|+
T Consensus 2 ~~iaiy-GKGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~gi 80 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYGNT 80 (274)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCCCE
T ss_conf 679997-9985547678999999999789979998989845366787389989978999986287767789443178981
Q ss_pred EECCCCCCCCCCCCCCCCCCCHH-HHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCHHHH----CCCCCCEEEEECCCCC
Q ss_conf 32233343552210001342024-78999867-521377758997455644421000000----0223402674214431
Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQ-SAIMHMLH-NVVWGQLDFLLIDMPPGTGDAHLTIAQ----KIPLSGVVIVSTPQDL 239 (341)
Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~-~~~w~~~D~liiD~ppG~gd~~lsl~~----~~~~~~~iiVttP~~~ 239 (341)
..+..|- .++...-..||-... ..++++-. +.. .++||+++|++. |+...-+. .-..+++++||+++..
T Consensus 81 ~cveagg-p~pg~gcagrgii~~~~~L~~l~~~~~~-~~~DyVl~DvLG---dvvcggFa~pir~~~A~eV~IVts~E~~ 155 (274)
T PRK13235 81 RCTESGG-PEPGVGCAGRGIITSVNLLEQLGAYDDE-WNLDYVFYDVLG---DVVCGGFAMPIRDGKAEEIYIVCSGEMM 155 (274)
T ss_pred EEEECCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEEEECCC---CCCCCCCCCCCCCCCCCEEEEEECCCHH
T ss_conf 8986899-8756675763152589999881775433-577689981378---5312451155100658789999168368
Q ss_pred HHHHHH---HHHHHHHC-CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCC
Q ss_conf 134566---67776400-12211445544202458778866512477658999998479789882799899975028821
Q gi|254780831|r 240 ALIDVK---RAISMYQK-MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIP 315 (341)
Q Consensus 240 s~~da~---r~~~~~~~-~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P 315 (341)
|+.++. |++..+.+ .+.++.|+|.|+.. .-......++++++++.++++.||.|..|+++..+|++
T Consensus 156 AL~aannI~k~i~~~~~~~~~~l~Gii~N~r~----------~~~~~~~v~~fa~~~g~~vi~~IPr~~~V~~Ae~~~~t 225 (274)
T PRK13235 156 AMYAANNICKGILKYADAGGVRLGGLICNSRK----------VDNEREMIEELARKLGTQMIHFVPRDNMVQRAEINRKT 225 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----------CCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCE
T ss_conf 99999999999999974379548899973677----------87578999999997499369975894588999873977
Q ss_pred EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 79977999899999999999999
Q gi|254780831|r 316 IVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 316 ~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
++.++|+|+.|++|++||++|++
T Consensus 226 Vie~~P~S~~A~~Yr~LA~~I~~ 248 (274)
T PRK13235 226 VIDYDPTHGQADEYRALARKIDE 248 (274)
T ss_pred EEEECCCCHHHHHHHHHHHHHHH
T ss_conf 89978998799999999999983
No 22
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=99.97 E-value=2e-31 Score=229.46 Aligned_cols=227 Identities=15% Similarity=0.095 Sum_probs=144.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC--CC----CCC----CCCCCCCCCCE
Q ss_conf 201024466654257899998987235775069882246787653100024563--11----233----44576632230
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV--EI----SDK----KFLKPKENYGI 165 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~--~~----~~~----~~i~p~~~~gi 165 (341)
+||||+|+||||||||+|+|||++|++.|+||++||+|..+ ++...||++... .. .++ ..+... ..|+
T Consensus 2 kiIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~-~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~-~~gl 79 (244)
T pfam06564 2 AVLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDN-LLRLHFNVDFDHSDGWARAELDGRPWRDAALRY-TPGL 79 (244)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEE-CCCE
T ss_conf 29999669998619999999999999779958999689874-210235888643441489987599777744452-6975
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 322333435522100013420247899986752-1377758997455644421000000022340267421443113456
Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341)
.+++.|.+.........+...-...+.+.+... .-++|||+|||||||.|- ++..-....|.+++|.+|++.|..-
T Consensus 80 ~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~~--l~~~al~aad~vLv~v~~d~~s~~~- 156 (244)
T pfam06564 80 DLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFSP--LTRQLLELADVTLAVVHADANCHIR- 156 (244)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH--HHHHHHHHCCCEEEEECCCHHHHHH-
T ss_conf 8972899747899989865443799999876421357899999979999689--9999999769608996888589999-
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCH
Q ss_conf 66777640012211445544202458778866512477658999998479789882799899975028821799779998
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSA 324 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~ 324 (341)
+-++.+....+++.||. . .+..+ .+...+.+.+.++-.+...||.|+++++|..+|+|+..++|+|+
T Consensus 157 -----l~~~~~~~~~~ilvn~~--d-----~~~~l-~~d~~~~~~~~~~~~l~~~I~rd~~l~EA~a~g~pv~~yaP~S~ 223 (244)
T pfam06564 157 -----LHQQALPAGCHLLINDF--R-----IGSQL-QDDLYQLWLQSQRRLLPIVVHRDEAMAEALAAKQPLGEYRPDSL 223 (244)
T ss_pred -----HHHCCCCCCCEEEEECC--C-----HHHHH-HHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCCCCHHHCCCCCH
T ss_conf -----73233446774886424--5-----57689-99999999986087257550798829899867995545386998
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999983
Q gi|254780831|r 325 TSEIYQEISDRIQQFF 340 (341)
Q Consensus 325 ~a~~~~~iA~~i~~~l 340 (341)
+|++|.++|..++..+
T Consensus 224 aA~dy~~LA~w~l~~~ 239 (244)
T pfam06564 224 AAEEVLTLANWCLLHY 239 (244)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999864
No 23
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.97 E-value=1.8e-31 Score=229.79 Aligned_cols=190 Identities=27% Similarity=0.291 Sum_probs=132.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CC---CCCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123---------34---45766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---------KK---FLKPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~---~i~p~~~~ 163 (341)
|.|||+ |||||||||+|+|||++||++|+||+++|||.++.|...++|....+...+ +. .+......
T Consensus 1 ~~iaiy-GKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~ 79 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 959998-8983568778999999999869969999038998733031199778719999875278664456678996688
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCC
Q ss_conf 303223334355221000134202478999867--521377758997455644421000-00---002234026742144
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLH--NVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQ 237 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~--~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~ 237 (341)
|+++++.| ..+......+||. ...+ +++. ...|.+|||+++|+ .||+.+. +. +....+++++|||||
T Consensus 80 gv~~veag-gp~~g~~~ag~~i--~~~~-~ll~~~~~~~~~~D~IliD~---lGdvv~~gf~~pi~~~~Ad~vlIvtt~E 152 (212)
T cd02117 80 GVKCVESG-GPEPGVGCAGRGV--ITAV-NLLEKEGFAEDDLDVVLYDV---LGDVVCGGFAMPIREGKADEIYIVTSGE 152 (212)
T ss_pred CEEEEECC-CCCCCCCCCCCHH--HHHH-HHHHHHHHHCCCCCEEEEEC---CCCCEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 70899889-9776765454117--8899-99997410025799999965---8854035633432116688899980693
Q ss_pred CCHHHHH---HHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC
Q ss_conf 3113456---6677764001-2211445544202458778866512477658999998479789882799
Q gi|254780831|r 238 DLALIDV---KRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFD 303 (341)
Q Consensus 238 ~~s~~da---~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d 303 (341)
++|+.++ .|++.++++. |.++.|+|.||.... ++....+++++++++++++.||+|
T Consensus 153 ~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~----------~~~~~i~~f~~~~g~~vl~~IP~d 212 (212)
T cd02117 153 FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC----------CHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 578898899999999997367981489998467888----------649999999998399189974899
No 24
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.97 E-value=3.4e-31 Score=227.92 Aligned_cols=194 Identities=23% Similarity=0.368 Sum_probs=131.1
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCC--------------CCCC-CCC
Q ss_conf 1024466654257899998987235775069882246787653100024563112334--------------4576-632
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK--------------FLKP-KEN 162 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~--------------~i~p-~~~ 162 (341)
|+|+|+||||||||+|+|||.+||++|+||+++|+|.++++.+.+++........... .+.+ ...
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 23032233343552210001342024789998675213777589974556444210000000223402674214431134
Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341)
Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341)
.++.+++.+..... ...............+.+|||+|||||||+++. +.......|.+++|++|+..|+.
T Consensus 81 ~~l~l~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~--~~~al~~ad~vivv~~p~~~sl~ 150 (212)
T pfam01656 81 DPLLLIPSNLSLAN--------FESELILEGGEEGLIKLAYDYVIIDGAPGLGEL--TANALVAADILVVPIEPEGVAVL 150 (212)
T ss_pred CCEEEECCCHHHHH--------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCEEEEEECCCHHHHH
T ss_conf 87465335015667--------777779999998766604998999479975599--99999839989999489769999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC---EEEECCCCHHHHH
Q ss_conf 56667776400122114455442024587788665124776589999984797---8988279989997
Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP---FLESVPFDMDVRV 308 (341)
Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~---~lg~IP~d~~i~~ 308 (341)
++.|.++++++++++++|+|+||- +.+....+ ....+.+.++.+.+ |.|.||+|.++.+
T Consensus 151 ~~~~l~~~~~~l~~~~~gvV~N~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~~ 212 (212)
T pfam01656 151 GAQRLLELVERLGLKILGVVLNKV-----DRGDERHL--DKEIEALERKTGIPVLLLLGVIPRDLALSE 212 (212)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCC-----CCCCHHHH--HHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 999999999985996229999148-----89983663--078999999978997514041168776687
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.97 E-value=7.9e-30 Score=218.79 Aligned_cols=218 Identities=21% Similarity=0.298 Sum_probs=150.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC--CCCC---C-----CCCCC-----CC
Q ss_conf 01024466654257899998987235775069882246787653100024563--1123---3-----44576-----63
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV--EISD---K-----KFLKP-----KE 161 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~--~~~~---~-----~~i~p-----~~ 161 (341)
+|||+ |||||||||+|+||+.|||++|+||+++||| |+.+..+++.++. ++.| . +.+.+ ..
T Consensus 2 kiaiy-GKGGIGKSTttaNl~aaLA~~G~kVl~IgcD---pk~Dst~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g 77 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD---PKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEG 77 (267)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCC---CCHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCC
T ss_conf 79997-7996578778999999999879959997789---9515567526988683999998608866641477875307
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCCCC--CCCHHHHCCCCCCEEEEECCCC
Q ss_conf 223032233343552210001342024789998675-2137775899745564442--1000000022340267421443
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHN-VVWGQLDFLLIDMPPGTGD--AHLTIAQKIPLSGVVIVSTPQD 238 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~-~~w~~~D~liiD~ppG~gd--~~lsl~~~~~~~~~iiVttP~~ 238 (341)
..|+..+..|- .++...-.-||- ..+ .++|.+ -.+.+|||+++|+|.+.-. -...+ -..+.+++||||+.
T Consensus 78 ~~gv~cvEaGg-P~pg~Gcagrgi--~~~-~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi---~~Ad~~~iVTs~e~ 150 (267)
T cd02032 78 YGGVDCVEAGG-PPAGAGCGGYVV--GET-VKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL---NYADYALIVTDNDF 150 (267)
T ss_pred CCCCEEEECCC-CCCCCCCCCCCH--HHH-HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC---CCCCEEEEEECCCH
T ss_conf 67845766589-999988776404--899-999987166434778999536654456656761---00688999956718
Q ss_pred CHHHHHHHHHHHHHC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC
Q ss_conf 113456667776400----1221144554420245877886651247765899999847978988279989997502882
Q gi|254780831|r 239 LALIDVKRAISMYQK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341)
Q Consensus 239 ~s~~da~r~~~~~~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341)
.|+.+|-|.+...++ .+.++.|+|.|.. .+ .+..+++++.++++++|.||.|..|+++..+|+
T Consensus 151 ~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~-------~~------~~~i~~fa~~lg~~lig~VP~d~~V~~se~~g~ 217 (267)
T cd02032 151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRT-------DK------TDLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGK 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-------CC------HHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCC
T ss_conf 78999999999999975337976422787469-------85------789999999729946996699338899987398
Q ss_pred CEEEECCCCH----HHHHHHHHHHHHHH
Q ss_conf 1799779998----99999999999999
Q gi|254780831|r 315 PIVVHNMNSA----TSEIYQEISDRIQQ 338 (341)
Q Consensus 315 P~v~~~p~s~----~a~~~~~iA~~i~~ 338 (341)
|++...|+++ .|+.|++||++|++
T Consensus 218 tvie~~p~~~~~s~~a~~Yr~LA~~i~~ 245 (267)
T cd02032 218 TLFEMDESDEELAYRCDYYLLIADQLLA 245 (267)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6898489984378999999999999983
No 26
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.96 E-value=9.8e-30 Score=218.16 Aligned_cols=135 Identities=27% Similarity=0.459 Sum_probs=105.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
||+|+||||||||||+++|||++|+++|+||+++|+|++++|++
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~an~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------------------------------------
T ss_conf 98996499998399999999999997899699998989996579------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCC
Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776-40012
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISM-YQKMN 255 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~-~~~~~ 255 (341)
+||+|||+|||+++..+++. ...+..++||||+|+|++|+++.++. .++.+
T Consensus 45 --------------------------~D~viiD~~aG~~~~~~~~~--~~ad~~lvV~tpeptSi~DAYalIK~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDFF--LAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHHH--HHCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf --------------------------99999948999877899999--95895799958970679999999999999639
Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH---HCCCEEEECC
Q ss_conf 211445544202458778866512477658999998---4797898827
Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEK---IGIPFLESVP 301 (341)
Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~---~~i~~lg~IP 301 (341)
..-+.+|+||.. ...+....|. ..++.+++ .+++++|+||
T Consensus 97 ~~~~~lvvN~v~----s~~ea~~~~~--~l~~v~~kfL~v~l~~lG~IP 139 (139)
T cd02038 97 VLNFRVVVNRAE----SPKEGKKVFK--RLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred CCCEEEEEECCC----CHHHHHHHHH--HHHHHHHHHCCCCCCCCEECC
T ss_conf 997599995689----9999999999--999999998099831071485
No 27
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.95 E-value=4.4e-27 Score=200.45 Aligned_cols=217 Identities=23% Similarity=0.292 Sum_probs=148.0
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC--CCCC---C-----CCCCC-----
Q ss_conf 4201024466654257899998987235775069882246787653100024563--1123---3-----44576-----
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV--EISD---K-----KFLKP----- 159 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~--~~~~---~-----~~i~p----- 159 (341)
..+|||+ ||||+||||+|+||++|||++|+||+++|||...-|. +++.++. ++.+ + +.+.+
T Consensus 2 ~~~iaiy-GKGGIGKSTttaNlsaALA~~GkkV~~IgcDPk~DsT---~~L~g~~~~tild~l~~~~~~~~~~~~ed~~~ 77 (269)
T PRK13185 2 ALVLAVY-GKGGIGKSTTSSNLSAALAKLGKKVLQIGCDPKHDST---FTLTGKLVPTVIDILEEVDFHSEELRPEDFVF 77 (269)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH---HHCCCCCCCCHHHHHHHCCCCHHHCCHHHHHH
T ss_conf 5399997-8995478889999999999769938998189973230---11259987878999974387602125667763
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCHHHHCC-----CCCCEEEE
Q ss_conf 63223032233343552210001342024789998675-2137775899745564442100000002-----23402674
Q gi|254780831|r 160 KENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHN-VVWGQLDFLLIDMPPGTGDAHLTIAQKI-----PLSGVVIV 233 (341)
Q Consensus 160 ~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~-~~w~~~D~liiD~ppG~gd~~lsl~~~~-----~~~~~iiV 233 (341)
....|+..+-.|- .++...-.-|| +..+++ +|.+ -.+.++||++.|.+.+ +. ++.+ ..+.+++|
T Consensus 78 ~G~~gv~cvEaGG-P~pG~GCaGrg--i~~~~~-~L~~~~~~~~~D~Vl~Dvlgd---Vv---CGGFa~Pi~~Ad~~~IV 147 (269)
T PRK13185 78 EGYNGVDCVEAGG-PPAGTGCGGYV--VGETVK-LLKEHHLLDDYDVILFDVLGD---VV---CGGFAAPLQYADYALIV 147 (269)
T ss_pred CCCCCCEEEECCC-CCCCCCCCCCC--HHHHHH-HHHHCCCCCCCCEEEEECCCC---CC---CCCCCCCHHCCCEEEEE
T ss_conf 3767705664389-99987767643--189999-998728743378799953674---33---36555751008889999
Q ss_pred ECCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHH
Q ss_conf 2144311345666777640----012211445544202458778866512477658999998479789882799899975
Q gi|254780831|r 234 STPQDLALIDVKRAISMYQ----KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVL 309 (341)
Q Consensus 234 ttP~~~s~~da~r~~~~~~----~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a 309 (341)
|+|+..|+.+|-+.+...+ ..+.++.|+|.|+. ++ .+-.+++++..++++++.||.|+.|+++
T Consensus 148 ts~e~~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~-------~~------~d~v~~fa~~~g~~vl~~IP~~~~V~~s 214 (269)
T PRK13185 148 TANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRS-------GG------TDQIDKFNERVGLRTLAHVPDLDAIRRS 214 (269)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-------CC------HHHHHHHHHHHCCCEEEECCCCHHHHHH
T ss_conf 2530878999999999998653015853232576168-------83------7799999998699769978997889999
Q ss_pred HCCCCCEEEECCCCHHHH---HHHHHHHHHHH
Q ss_conf 028821799779998999---99999999999
Q gi|254780831|r 310 SDLGIPIVVHNMNSATSE---IYQEISDRIQQ 338 (341)
Q Consensus 310 ~~~g~P~v~~~p~s~~a~---~~~~iA~~i~~ 338 (341)
..+|+|++..+|+++.+. +|++||++|++
T Consensus 215 e~~g~TviE~~p~~~~a~v~~~Yr~LA~~i~~ 246 (269)
T PRK13185 215 RLKGKTLFEMEETDELEEVQNEYLRLADQLLA 246 (269)
T ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 87498678858998178999999999999982
No 28
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.95 E-value=2.4e-28 Score=208.88 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-------CCCCCCEECCCCCCCCCCCCC---CCCCCCCCEEE
Q ss_conf 10244666542578999989872357750698822467-------876531000245631123344---57663223032
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY-------GPSIPKLLKISGKVEISDKKF---LKPKENYGIKI 167 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~-------~ps~~~~lg~~~~~~~~~~~~---i~p~~~~gi~~ 167 (341)
|.+.||||||||||+|+|||++||+.|+||+++|+|.. ++|+..+++... .....+.. +.+........
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~-~e~~~~~~~~~v~~~~~~~~~~ 79 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVED-PEIAPNLYREEVDATRRVERAW 79 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989978996619999999999999689949999589876653234798651358887-6667999987501666533311
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCHHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 23334355221000134202478999867521377758997455644421----00000002234026742144311345
Q gi|254780831|r 168 MSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA----HLTIAQKIPLSGVVIVSTPQDLALID 243 (341)
Q Consensus 168 ~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~----~lsl~~~~~~~~~iiVttP~~~s~~d 243 (341)
...+ ....+....+.|.....++..+.....|++|||+|||||| ||+. ...+.+....+++++||+|+++++.+
T Consensus 80 ~~~~-~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpP-TGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~~~e 157 (217)
T cd02035 80 GGEG-GLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAP-TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYE 157 (217)
T ss_pred HHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH
T ss_conf 0011-4567776159978999999999999854899889982898-5569998678872488876799995776217999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 666777640012211445544202
Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSY 267 (341)
Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~ 267 (341)
++|.+.++++.++++.|+|+||.+
T Consensus 158 t~r~~~~L~~~gi~v~~vVvN~v~ 181 (217)
T cd02035 158 TERAITELALYGIPVDAVVVNRVL 181 (217)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 999999999779988989895882
No 29
>PHA02518 ParA-like protein; Provisional
Probab=99.95 E-value=4e-27 Score=200.77 Aligned_cols=203 Identities=20% Similarity=0.294 Sum_probs=139.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
|||+|+|.||||||||+|+|||.+|++.|+||+|+|+|-++... ..+.... +.....|. ..
T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~-~w~~~r~-----~~~~~~~~-------~~------ 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST-DWAEARE-----EGEPLIPV-------VR------ 61 (211)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHCC-----CCCCCCCH-------HH------
T ss_conf 98999808999749999999999999789948999779996788-9998522-----68997401-------21------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH---
Q ss_conf 22100013420247899986752137775899745564442100000002234026742144311345666777640---
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQ--- 252 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~--- 252 (341)
.++-+...+++ .. ++|||+||||||..|.... ......|.+|+.+.|++.++.-+.+..++.+
T Consensus 62 -------~~~~~~~~l~~----~~-~~yD~viID~pp~~~~~~~--~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~ 127 (211)
T PHA02518 62 -------MGKSIRADLPK----VA-SGYDYVVVDGAPQDSELAR--AALRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------CCHHHHHHHHH----HC-CCCCEEEECCCCCCHHHHH--HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf -------36779999997----40-6788899889997429999--9999589699963786878999999999999999
Q ss_pred CC--CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCCCHHHHHHHCCCCCEEEECCCCHHHHHH
Q ss_conf 01--2211445544202458778866512477658999998479789-88279989997502882179977999899999
Q gi|254780831|r 253 KM--NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329 (341)
Q Consensus 253 ~~--~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~ 329 (341)
+. +.+.++++.||.. ++... ....+...++++.+++ ..||......++...|.|+..+.|+++++++|
T Consensus 128 ~~~~~~~~~~~l~~~~~-------~~~~~--~~~~~~~l~~~~~~v~~t~I~~r~~~~~a~~~G~~V~e~~~~~~aa~e~ 198 (211)
T PHA02518 128 EVTDGLPKFAFIISRAI-------KNTQL--YREARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEI 198 (211)
T ss_pred HHCCCCCEEEEEEECCC-------CCCHH--HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHEECCCCHHHHHH
T ss_conf 86656751688862358-------66569--9999999998699810681988789999997599761099799999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999983
Q gi|254780831|r 330 QEISDRIQQFF 340 (341)
Q Consensus 330 ~~iA~~i~~~l 340 (341)
+.+++.|++++
T Consensus 199 ~~L~~Eil~r~ 209 (211)
T PHA02518 199 IQLVKELFRGI 209 (211)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999863
No 30
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.94 E-value=3.4e-26 Score=194.55 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=144.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC--CCCCC----CC----CC-----CCCC
Q ss_conf 0102446665425789999898723577506988224678765310002456--31123----34----45-----7663
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK--VEISD----KK----FL-----KPKE 161 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~--~~~~~----~~----~i-----~p~~ 161 (341)
-|||+ ||||+||||+|+||+.|||++|+||++++||...-|. +++.++ ++..+ ++ .+ .-..
T Consensus 2 ~iaiy-GKGGIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT---~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G 77 (271)
T CHL00072 2 KIAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST---FTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKG 77 (271)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH---HHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 69997-8985448588999999999879979997899737777---4006998885999997537873216499998527
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCC-HHHHCC-CCCCEEEEECCCC
Q ss_conf 2230322333435522100013420247899986752-137775899745564442100-000002-2340267421443
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHL-TIAQKI-PLSGVVIVSTPQD 238 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~l-sl~~~~-~~~~~iiVttP~~ 238 (341)
..|+..+-.|- .++...-.-||- ..++ ++|.+. .+.++||++.|.+.+ +.. .++.-+ ..+.+++||+|+.
T Consensus 78 ~~gi~cvEaGG-PepGvGCaGrgi--~~~i-~lL~~l~~~~d~D~V~yDvlgD---VVCGGFa~Pi~~Ad~~~iVts~e~ 150 (271)
T CHL00072 78 YGGVDCVEAGG-PPAGAGCGGYVV--GETV-KLLKELNAFYEYDVILFDVLGD---VVCGGFAAPLNYADYCIIITDNGF 150 (271)
T ss_pred CCCCEEEECCC-CCCCCCCCCCCC--HHHH-HHHHHCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCCEEEEEECCCH
T ss_conf 78846654389-998877788651--9999-9999737621388899944776---556545675000888999956708
Q ss_pred CHHHHHHHHHHHHHC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC
Q ss_conf 113456667776400----1221144554420245877886651247765899999847978988279989997502882
Q gi|254780831|r 239 LALIDVKRAISMYQK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341)
Q Consensus 239 ~s~~da~r~~~~~~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341)
.|+.+|-+.+...++ -+.+.-|+|.|+. ++ ++-..++++..++++++.||.|..|+++..+|+
T Consensus 151 malyaANnI~~~i~~~a~~~~~rl~GiI~N~~-------~~------~~~v~~fa~~~g~~~i~~iPrd~~V~~ae~~~~ 217 (271)
T CHL00072 151 DALFAANRIAASVREKARTHPLRLAGLVGNRT-------SK------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGK 217 (271)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-------CC------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCC
T ss_conf 89999999999999973046864443652268-------83------789999999739966985687116689997488
Q ss_pred CEEEECCCCHH----HHHHHHHHHHHHH
Q ss_conf 17997799989----9999999999999
Q gi|254780831|r 315 PIVVHNMNSAT----SEIYQEISDRIQQ 338 (341)
Q Consensus 315 P~v~~~p~s~~----a~~~~~iA~~i~~ 338 (341)
+++...|+||. +..|++||++|++
T Consensus 218 TviE~~p~s~~~~~~~~~Yr~LA~~I~~ 245 (271)
T CHL00072 218 TLFEMAESEPSLNYVCDFYLNIADQLLS 245 (271)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 2042289982478999999999999973
No 31
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.94 E-value=1.1e-25 Score=191.15 Aligned_cols=224 Identities=22% Similarity=0.285 Sum_probs=154.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----CCCCC--------CCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233----44576--------6322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----KFLKP--------KENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~~i~p--------~~~~ 163 (341)
|-|||+ ||||+||||+|+||+.|||++|+||+++.||...-|.-.++|-...+++.+- ..... ....
T Consensus 5 r~IAiY-GKGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293)
T PRK13234 5 RQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf 579997-7984458778999999999779969997489831656876289999708899876498121538789743779
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECCC
Q ss_conf 30322333435522100013420247899986752-1377758997455644421000000022-----34026742144
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTPQ 237 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP~ 237 (341)
|+..+-.|- .++...-..||- -.+++ +|.+. .+.++||++.|. .||+...= ..+| .+++++||+.+
T Consensus 84 gI~CVEsGG-PePGvGCAGRGI--itai~-~Le~lga~ed~D~V~yDV---LGDVVCGG-FAmPir~g~A~evyIVtSge 155 (293)
T PRK13234 84 GIKCVESGG-PEPGVGCAGRGV--ITSIN-FLEENGAYDDVDYVSYDV---LGDVVCGG-FAMPIRENKAQEIYIVMSGE 155 (293)
T ss_pred CEEEEECCC-CCCCCCCCCCCH--HHHHH-HHHHCCCCCCCCEEEEEC---CCCCCCCC-CCCCCCCCCCCEEEEEECCC
T ss_conf 848976899-899888777131--46788-887718765799999956---77665147-55665458876899994671
Q ss_pred CCHHHHH---HHHHHHH-HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCC
Q ss_conf 3113456---6677764-00122114455442024587788665124776589999984797898827998999750288
Q gi|254780831|r 238 DLALIDV---KRAISMY-QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLG 313 (341)
Q Consensus 238 ~~s~~da---~r~~~~~-~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g 313 (341)
..|+..| .|++.-+ +.-+.+.-|+|.|- ..... -...++++|++.++++++.||.|+.++++-.+|
T Consensus 156 ~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~----r~~~~------e~~~v~~fa~~~gt~ii~~IPrs~~v~~aE~~~ 225 (293)
T PRK13234 156 MMALYAANNIAKGILKYANSGGVRLGGLICNE----RQTDR------ELELAEALAKRLGSKLIHFVPRDNIVQHAELRR 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCC------HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC
T ss_conf 87999999999999998632696246899717----89853------799999999984993799779968899999739
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2179977999899999999999999
Q gi|254780831|r 314 IPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 314 ~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
++++.++|+|+.|.+|++||++|.+
T Consensus 226 ~TviE~~P~s~~A~~Yr~LA~~I~~ 250 (293)
T PRK13234 226 MTVIEYAPDSKQAGEYRALAEKIHA 250 (293)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 7778968898799999999999984
No 32
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.93 E-value=2.4e-25 Score=188.89 Aligned_cols=224 Identities=20% Similarity=0.244 Sum_probs=155.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC----CCCCCCC--------CCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123----3445766--------322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD----KKFLKPK--------ENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~i~p~--------~~~ 163 (341)
|-|||+ ||||+||||+|+||+.|||++|+||+++.||...-|...++|-...+.+.+ +.....+ ...
T Consensus 7 k~IAiY-GKGGIGKSTts~NlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~tvld~~~e~~~~ed~~ledvv~~G~~ 85 (295)
T PRK13236 7 RQIAFY-GKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELEEVMLTGFR 85 (295)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
T ss_conf 189996-7984347578999999999779969997889802667876389999718888876098444548887422658
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECCC
Q ss_conf 3032233343552210001342024-78999867521377758997455644421000000022-----34026742144
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQ-SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTPQ 237 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP~ 237 (341)
|+..+-.|- .++...-..||-..+ ..|+++ -.+.++||++.|. .||+...= ...| .+++++||+.+
T Consensus 86 Gi~CvEsGG-PePGvGCAGRGIitai~lLee~---ga~e~~D~V~yDV---LGDVVCGG-FAmPir~g~A~evyiVtSge 157 (295)
T PRK13236 86 GVRCVESGG-PEPGVGCAGRGIITAINFLEEN---GAYQDLDFVSYDV---LGDVVCGG-FAMPIREGKAQEIYIVTSGE 157 (295)
T ss_pred CCEEEECCC-CCCCCCCCCCEEEEHHHHHHHC---CCCCCCCEEEEEE---CCCCCCCC-CCCCCCCCCCCEEEEEECCC
T ss_conf 837987899-9998988886254056679871---9855699898850---57753267-54656678764899995681
Q ss_pred CCHHHHH---HHHHHHHH-CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCC
Q ss_conf 3113456---66777640-0122114455442024587788665124776589999984797898827998999750288
Q gi|254780831|r 238 DLALIDV---KRAISMYQ-KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLG 313 (341)
Q Consensus 238 ~~s~~da---~r~~~~~~-~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g 313 (341)
..|+..| .|++.-+. .-+.+.-|+|.|- +.-......++++|++.++++++.||.|..|+++-.++
T Consensus 158 ~malyAANNI~~~i~~~a~~g~~rlgGiI~N~----------r~~~~e~~~v~~fa~~~gt~ii~~iPr~~~V~~ae~~~ 227 (295)
T PRK13236 158 MMAMYAANNIARGILKYAHTGGVRLGGLICNS----------RNVDREIELIETLAKRLNTQMIHFVPRDNIVQHAELRR 227 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC----------CCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC
T ss_conf 88999999999999999742697035899607----------88874799999999981992699657838888999739
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2179977999899999999999999
Q gi|254780831|r 314 IPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 314 ~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
+.++.++|+|+.|.+|++||++|++
T Consensus 228 ~TviE~~P~s~~A~~Yr~LA~~i~~ 252 (295)
T PRK13236 228 MTVNEYAPDSNQGNEYRILAKKIIN 252 (295)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8768878897799999999999985
No 33
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=99.93 E-value=6.9e-27 Score=199.18 Aligned_cols=81 Identities=62% Similarity=1.182 Sum_probs=79.3
Q ss_pred CCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf 75899745564442100000002234026742144311345666777640012211445544202458778866512477
Q gi|254780831|r 203 LDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGN 282 (341)
Q Consensus 203 ~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~ 282 (341)
+|||+||+||||||++|++.|.++.+++++|||||.+|+.|++|+++|++++++|++|+|||||||.|++|++++++||+
T Consensus 1 LDyLiiD~PPGTgD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENMs~~~c~~c~~~~~iFg~ 80 (81)
T pfam10609 1 LDYLIIDMPPGTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENMSYFVCPDCGEKIYIFGK 80 (81)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCCC
T ss_conf 98999948999678999999748857769980985999999999999999849961899977975368999987569899
Q ss_pred C
Q ss_conf 6
Q gi|254780831|r 283 G 283 (341)
Q Consensus 283 ~ 283 (341)
|
T Consensus 81 g 81 (81)
T pfam10609 81 G 81 (81)
T ss_pred C
T ss_conf 7
No 34
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.93 E-value=3.2e-26 Score=194.72 Aligned_cols=168 Identities=22% Similarity=0.349 Sum_probs=111.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC--CCC---CCCC---CCCCCC---CC-
Q ss_conf 20102446665425789999898723577506988224678765310002456--311---2334---457663---22-
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK--VEI---SDKK---FLKPKE---NY- 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~--~~~---~~~~---~i~p~~---~~- 163 (341)
|||- .||||||||||+|+|+|++||+.|+||+++|.|. .+|+...||.+-. +.. .++- .+-|.. .+
T Consensus 1 r~i~-~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDP-ahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~~~~ 78 (254)
T cd00550 1 RYIF-FGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP-AHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR 78 (254)
T ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC-CCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHHHHH
T ss_conf 9899-9689855489999999999996899499995898-6448898488667887110366884578728899999999
Q ss_pred -C-EEECCCCCC---CCCCCCCCCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH-------------
Q ss_conf -3-032233343---552210001342024--78999867521377758997455644421000000-------------
Q gi|254780831|r 164 -G-IKIMSMASL---VDENVAMIWRGPMVQ--SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ------------- 223 (341)
Q Consensus 164 -g-i~~~s~g~l---~~~~~~~~~rg~~~~--~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~------------- 223 (341)
. .+.+...+. .+......++.|... -++.+++..+.|++|||+|+|||| ||+. |.+.+
T Consensus 79 ~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaP-TGht-LrlL~lP~~l~~~~~~L~ 156 (254)
T cd00550 79 QEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAP-TGHT-LRLLSLPTVLSWAREILS 156 (254)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHH-HHHHHCHHHHHHHHHHCC
T ss_conf 99999886322556688889998639858999999999999760699889988998-5679-987515699999998537
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 02234026742144311345666777640012211445544202
Q gi|254780831|r 224 KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSY 267 (341)
Q Consensus 224 ~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~ 267 (341)
--..+.+++||+|+.+++.+++|.+.++++.++|+.|+|+||-+
T Consensus 157 d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~ 200 (254)
T cd00550 157 DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLL 200 (254)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 95655899997787216999999999999779998979995880
No 35
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.92 E-value=3.1e-25 Score=188.12 Aligned_cols=161 Identities=22% Similarity=0.395 Sum_probs=127.3
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCCCCCCCCCCEE
Q ss_conf 42010244666542578999989872357750698822467876531000245631123--------3445766322303
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKFLKPKENYGIK 166 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~i~p~~~~gi~ 166 (341)
+|.+||+|...|.||||+++|||.+||+.|+||+|||||+..|++|.+||+.+.+...+ +..+......++.
T Consensus 103 ~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~~~~~~nL~ 182 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENLS 182 (274)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHEEECCCCCCEE
T ss_conf 83899968999998999999999999967991999958888844779759999768788845999889905158989978
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 223334355221000134202478999867521377758997455644--421000000022340267421443113456
Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341)
+++.|...+ +-+.. +.+..+.+++.+.. ++|||+||||||-. .|.++ +++ ..|++++|+....+...++
T Consensus 183 VLpaG~~pp-nP~eL----L~s~~~~~ll~~l~-~~yD~IIiDTPPvl~~sDA~i-la~--~aDg~LlVvR~~~T~~~~l 253 (274)
T TIGR03029 183 VLPAGAIPP-NPQEL----LARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQI-VAT--RARGTLIVSRVNETRLHEL 253 (274)
T ss_pred EEECCCCCC-CHHHH----HHHHHHHHHHHHHH-HHCCEEEEECCCCCCCCHHHH-HHH--HCCEEEEEEECCCCCHHHH
T ss_conf 996999998-97998----73589999999998-409999993898655434999-998--6897999996898889999
Q ss_pred HHHHHHHHCCCCCHHHHHHH
Q ss_conf 66777640012211445544
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIEN 264 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~N 264 (341)
.++++.+++.+++++|+|.|
T Consensus 254 ~~a~~~L~~~g~~VlGvVLN 273 (274)
T TIGR03029 254 TSLKEHLSGVGVRVVGAVLN 273 (274)
T ss_pred HHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999779966899848
No 36
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.92 E-value=2.5e-24 Score=182.17 Aligned_cols=233 Identities=25% Similarity=0.339 Sum_probs=146.8
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCEECCCCCCCC------CC-CCC---CCCC-CC
Q ss_conf 420102446665425789999898723-577506988224678765310002456311------23-344---5766-32
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADVYGPSIPKLLKISGKVEI------SD-KKF---LKPK-EN 162 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi~~ps~~~~lg~~~~~~~------~~-~~~---i~p~-~~ 162 (341)
.+||+|+|.||||||||+|+|||.+|| ..|+||+++|+|.++ |....||.+..... .. ... .... ..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVI 80 (259)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHCCCCCCCCCHHHHHHCCCCCCCHHHCCCCC
T ss_conf 7699998578885199999999999998389978999789994-177784666432310366763233322102203445
Q ss_pred CCEEECCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 2303223334355221000134-202478999867521377758997455644421000000022340267421443113
Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRG-PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg-~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
+++.+++...-... ...++.. .-....++.++. -.|++|||+||||||+.|. ++.......+.+++.+.|+..++
T Consensus 81 ~~l~~ip~~~~l~~-~~~~~~~~~~~~~~l~~~~~-~~~~~yD~iiID~pp~l~~--l~~nal~asd~vliP~~~~~~~~ 156 (259)
T COG1192 81 EGLDLIPSNIDLAE-GAEIELNAVAKELLLKRLLD-PVKDDYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDL 156 (259)
T ss_pred CCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEECCCCCHHH--HHHHHHHHHCCEEECCCCCHHHH
T ss_conf 67312357600010-04566542117899999975-2026999899899986167--77999998275567047508689
Q ss_pred HHHHHHHHHHHCC---C---CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCC-CEEEECCCCHHHHHHHCCCC
Q ss_conf 4566677764001---2---211445544202458778866512477658999998479-78988279989997502882
Q gi|254780831|r 242 IDVKRAISMYQKM---N---IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGI-PFLESVPFDMDVRVLSDLGI 314 (341)
Q Consensus 242 ~da~r~~~~~~~~---~---~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i-~~lg~IP~d~~i~~a~~~g~ 314 (341)
.-..+......++ . .++.+++.||-. .+... .....+.+.+.++. .+...||....++++...|.
T Consensus 157 ~~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~ 228 (259)
T COG1192 157 EGLEQLLNTLEDLLKLRRNKLIVVGILITRFD-------SRTKL-ADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGK 228 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-------CCCCH-HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 88999999999999852453232567435347-------42015-78999999975143111144765326887887498
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 17997799989999999999999983
Q gi|254780831|r 315 PIVVHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 315 P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
|+....|+++.++.|.++++.+.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~e~~~~~ 254 (259)
T COG1192 229 PLYEYDPKSKAAEEYYELAKELLEEL 254 (259)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 01550787557999999999999975
No 37
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.91 E-value=1.4e-24 Score=183.84 Aligned_cols=162 Identities=15% Similarity=0.281 Sum_probs=128.7
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCCCCCCCCCCEE
Q ss_conf 42010244666542578999989872357750698822467876531000245631123--------3445766322303
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKFLKPKENYGIK 166 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~i~p~~~~gi~ 166 (341)
.|+|.|+|.--|.||||+|+|||.++|+.|+||+|||||++.|++|.+||+.+.+...+ ++.+.+....|+.
T Consensus 531 ~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~ld 610 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 610 (726)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCEE
T ss_conf 86899977999997799999999999847995999828877710776159999987799838999889933027989989
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 223334355221000134202478999867521377758997455644--421000000022340267421443113456
Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341)
+++.|-..+.- +.. +.+..+.+|+.... ..|||+|||+||=. .|. +.+++ ..|++++|+....+....+
T Consensus 611 vl~aG~~p~nP-~el----L~s~~~~~ll~~l~-~~yD~IIiDtPPvl~v~Da-~~l~~--~~D~~l~Vvr~g~T~~~~~ 681 (726)
T PRK09841 611 VITRGQVPPNP-SEL----LMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDA-AVVGR--SVGTSLLVARFGLNTAKEV 681 (726)
T ss_pred EEECCCCCCCH-HHH----HCCHHHHHHHHHHH-HCCCEEEEECCCCCCCCHH-HHHHH--HCCEEEEEEECCCCCHHHH
T ss_conf 98289999798-999----58769999999998-1399999919996534159-99999--7895999997996889999
Q ss_pred HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 667776400122114455442
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NM 265 (341)
.++++.+++.+.++.|+|.|.
T Consensus 682 ~~a~~~l~~~~~~v~G~vlN~ 702 (726)
T PRK09841 682 SLSMQRLEQAGVNIKGAILNG 702 (726)
T ss_pred HHHHHHHHHCCCCEEEEEECC
T ss_conf 999999997899758999828
No 38
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=99.91 E-value=1.2e-24 Score=184.20 Aligned_cols=160 Identities=21% Similarity=0.388 Sum_probs=129.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC-CC--------CCCCCCCCCCC-CCE
Q ss_conf 201024466654257899998987235775069882246787653100024563-11--------23344576632-230
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV-EI--------SDKKFLKPKEN-YGI 165 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~-~~--------~~~~~i~p~~~-~gi 165 (341)
|+++|+|-|-|-||||+|+|+|.++||.||||+|||+|++-|-++..|...++. .. .-.+.|..... .++
T Consensus 20 K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL 99 (207)
T TIGR01007 20 KVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENL 99 (207)
T ss_pred EEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCC
T ss_conf 58998411058886241078899998568558887546586603678658887656333221454533342026546787
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 32233343552210001342024789998675213777589974556444---210000000223402674214431134
Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341)
Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341)
.++..|-..|.-.++ +.++..++|+.... .-|||+|||||| .| |+|+ +++ ..++.||||.-+..--.
T Consensus 100 ~vi~sG~vPPNPt~L-----L~s~~F~~l~e~~~-~~fD~iiiDTPP-ig~V~DAai-~a~--~~d~~~LV~~A~~~~k~ 169 (207)
T TIGR01007 100 DVITSGPVPPNPTEL-----LQSSNFKTLIETLR-KYFDYIIIDTPP-IGTVIDAAI-IAR--AVDASILVTDAGKIKKR 169 (207)
T ss_pred EEECCCCCCCCHHHH-----HHHHHHHHHHHHHH-CCCCEEEEEECC-CCHHHHHHH-HHH--HHCCEEEEEECCCCCHH
T ss_conf 275178878775478-----88899999999987-168889995188-666788999-998--72977988722532646
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 56667776400122114455442
Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NM 265 (341)
++.|+.+.++|.|-.+||||.|.
T Consensus 170 ~v~KAK~~LEq~G~~~LGvvLNK 192 (207)
T TIGR01007 170 EVKKAKEQLEQAGSKFLGVVLNK 192 (207)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 78999999986178411588888
No 39
>PRK11519 tyrosine kinase; Provisional
Probab=99.90 E-value=5.6e-24 Score=179.80 Aligned_cols=162 Identities=19% Similarity=0.313 Sum_probs=128.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCCCCCCCCCCEE
Q ss_conf 42010244666542578999989872357750698822467876531000245631123--------3445766322303
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKFLKPKENYGIK 166 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~i~p~~~~gi~ 166 (341)
.|+|.|+|.-.|.||||+|+|||.++|+.|+||+|||||+..|++|..||..+.+...+ +..+.|....++.
T Consensus 526 ~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~l~ 605 (720)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIANFD 605 (720)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCEE
T ss_conf 76799970899997899999999999837991999938777701677539999998599807999789970357989989
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCHHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 223334355221000134202478999867521377758997455644--421000000022340267421443113456
Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341)
+++.|-..+.-..+ +.+..+.+|+.... ..|||+|||+||=. .|. ..+++ ..|++++|.....+....+
T Consensus 606 vl~~G~~~pnp~el-----L~s~~~~~ll~~l~-~~yD~IIiDtpPv~~v~Da-~~la~--~aD~~l~Vvr~g~t~~~~v 676 (720)
T PRK11519 606 LIPRGQVPPNPSEL-----LMSERFAELVAWAS-KNYDLVLIDTPPILAVTDA-AIVGR--HVGTTLMVARYAVNTLKEV 676 (720)
T ss_pred EECCCCCCCCHHHH-----HCCHHHHHHHHHHH-HHCCEEEEECCCCCCCHHH-HHHHH--HCCEEEEEEECCCCCHHHH
T ss_conf 97699999498998-----38759999999998-5299999939996523589-99999--7897999998995789999
Q ss_pred HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 667776400122114455442
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NM 265 (341)
..+++.+++.+++++|+|.|.
T Consensus 677 ~~a~~~l~~~~~~v~G~VlN~ 697 (720)
T PRK11519 677 ETSLSRFEQNGIPVKGVILNS 697 (720)
T ss_pred HHHHHHHHHCCCCEEEEEECC
T ss_conf 999999996899748999889
No 40
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.90 E-value=1e-23 Score=178.10 Aligned_cols=229 Identities=18% Similarity=0.257 Sum_probs=142.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------------CCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233-----------------4457
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------------KFLK 158 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------------~~i~ 158 (341)
+||+|++.||||||||+|+|||.+||..|+||++||+|-++ |+..+||..+.....++ ..+.
T Consensus 105 ~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvIDLDPQa-nlT~~~G~~pe~d~~~~~tl~~~l~~d~~~~~l~~~i~ 183 (387)
T TIGR03453 105 QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAIDLDPQA-SLSALFGFQPEFDVGENETLYGAIRYDDERRPLSEIIR 183 (387)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf 08999788876569999999999999779988999537016-78875289843466756429999844556687999611
Q ss_pred CCCCCCEEECCCCC-CCCC--CCCC-CCCC----CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE
Q ss_conf 66322303223334-3552--2100-0134----2024789998675213777589974556444210000000223402
Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDE--NVAM-IWRG----PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV 230 (341)
Q Consensus 159 p~~~~gi~~~s~g~-l~~~--~~~~-~~rg----~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ 230 (341)
+....|+.+++... +.+- +.+. ..++ ......+.+.|..+ +.+|||+||||||..| .+|+....+.|.+
T Consensus 184 ~T~~~~LdliPa~~~L~~~E~~~~~~l~~~~~~~~~f~~rL~~aL~~v-~d~YD~IlIDcPPsLg--~lT~nAL~AAd~v 260 (387)
T TIGR03453 184 KTYFPGLDLIPGNLELMEFEHETPRALSRGAGGDTIFFARVGEALAEV-EDDYDVVVIDCPPQLG--FLTLSALCAATAV 260 (387)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCC--HHHHHHHHHCCEE
T ss_conf 479999689659889999889889999743110026999999999976-6029999995898513--9999999981940
Q ss_pred EEEECCCCCHHHHHHHHHHHH-------HC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC-EEE
Q ss_conf 674214431134566677764-------00----122114455442024587788665124776589999984797-898
Q gi|254780831|r 231 VIVSTPQDLALIDVKRAISMY-------QK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP-FLE 298 (341)
Q Consensus 231 iiVttP~~~s~~da~r~~~~~-------~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~-~lg 298 (341)
|+...|+.+.+.-...-+.|+ ++ .+.+.++++..| |. .+... .......+-+.|+-. +-.
T Consensus 261 lIPv~p~~ld~~s~~qfl~~~~~l~~~i~~~g~~~~~d~~~~LlT~--~d-----~~~~~-~~~v~~~~r~~fg~~vl~~ 332 (387)
T TIGR03453 261 LITVHPQMLDVMSMSQFLLMTGDLLGVVRDAGGNLSYDWMRYLVTR--YE-----PNDGP-QAQMVAFMRSLFGEHVLTN 332 (387)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--EC-----CCCCH-HHHHHHHHHHHHHHHHHCC
T ss_conf 8788871777999999999999999999971677676405776451--78-----99846-9999999999850654236
Q ss_pred ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 82799899975028821799779998999999999999
Q gi|254780831|r 299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336 (341)
Q Consensus 299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i 336 (341)
.||.+.+|.+|+..+.-+....+..-..+.|++.-+.+
T Consensus 333 ~i~~S~ai~~A~~~~~TiyE~~~~~~~r~ty~Ra~e~~ 370 (387)
T TIGR03453 333 PMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESL 370 (387)
T ss_pred EEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 20167999863763793598774658989999999999
No 41
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.90 E-value=4.3e-23 Score=173.90 Aligned_cols=220 Identities=23% Similarity=0.357 Sum_probs=159.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCCCC------CC------C-----
Q ss_conf 010244666542578999989872357-75069882246787653100024563112334------45------7-----
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISDKK------FL------K----- 158 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~------~i------~----- 158 (341)
+|||+ ||||+||||+|+-|+..|..+ |++|+.+|||- -+|+|..||++.++....+. .. .
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 69996-599765899999999999864895499994899-9990776299998755300899999986147899955300
Q ss_pred ---------C----CCCCCEEECCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf ---------6----632230322333435522100013420--2478999867521377758997455644421000000
Q gi|254780831|r 159 ---------P----KENYGIKIMSMASLVDENVAMIWRGPM--VQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ 223 (341)
Q Consensus 159 ---------p----~~~~gi~~~s~g~l~~~~~~~~~rg~~--~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~ 223 (341)
| .+..+++++-+|-.-+.. .|.. .+..+++||++....++||+|+||-+|. .|++--.
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~G-----eGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGi--EHfgRg~ 152 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGG-----EGCACPMNALLRRLLRHLILNRYEVVIVDTEAGI--EHFGRGT 152 (255)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHCCCC
T ss_conf 13754335169885006880079952556799-----7431627899999999975166748999633456--6656563
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC
Q ss_conf 02234026742144311345666777640012211445544202458778866512477658999998479789882799
Q gi|254780831|r 224 KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFD 303 (341)
Q Consensus 224 ~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d 303 (341)
.-..|-+|+|+.|.--|+.-|.|..++.+++++.-+++|.|.- . +.. ......++.++.+++|.||+|
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv----~---e~e-----~~~~~~~~~~~~~vlg~iP~d 220 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKV----D---EEE-----ELLRELAEELGLEVLGVIPYD 220 (255)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC----C---CHH-----HHHHHHHHCCCCEEEEECCCC
T ss_conf 2578779999578778888899999999871875499999503----4---115-----777765322797489971698
Q ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8999750288217997799989999999999999983
Q gi|254780831|r 304 MDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 304 ~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
+.+.++.-+|.|+... | ...+.+++|+++|.++.
T Consensus 221 ~~v~~~dl~G~pl~~~-~--~v~~~i~~I~~~l~~~~ 254 (255)
T COG3640 221 PEVVEADLKGEPLNEE-P--EVLKEIEEIAERLIKLV 254 (255)
T ss_pred HHHHHCCCCCCCCCCC-H--HHHHHHHHHHHHHHHCC
T ss_conf 7887422568842123-5--55789999999998504
No 42
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.90 E-value=1e-23 Score=178.09 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=140.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----------------CCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----------------34457
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----------------KKFLK 158 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----------------~~~i~ 158 (341)
+||+|++.||||||||+|+|||.+||..|+||++||+|-+| |+..+||+.+...... ...+.
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQg-nlS~~lG~~pe~d~~~~~tl~~~l~~d~~~~~l~~~I~ 200 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIR 200 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCC
T ss_conf 28999788877659999999999999779988999645617-88898089854566531359999844545587999521
Q ss_pred CCCCCCEEECCCCC-CCCCC--CCC--C---CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE
Q ss_conf 66322303223334-35522--100--0---1342024789998675213777589974556444210000000223402
Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDEN--VAM--I---WRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV 230 (341)
Q Consensus 159 p~~~~gi~~~s~g~-l~~~~--~~~--~---~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ 230 (341)
|....|+.+++... +.+-+ .+. . .|.......+.+.|..+ ..+|||+||||||..| .+|+...++.|.+
T Consensus 201 ~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~~v-~d~YDvIiIDcPPsLg--~lT~nAL~AAd~v 277 (405)
T PRK13869 201 PTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFDEV-ADDYDVVVIDCPPQLG--FLTLSGLCAATSM 277 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCCHH--HHHHHHHHHHCEE
T ss_conf 679999689589889999888759998743315568999999999864-4129989995998265--9999999982863
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCC-----------CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-E
Q ss_conf 674214431134566677764001-----------2211445544202458778866512477658999998479789-8
Q gi|254780831|r 231 VIVSTPQDLALIDVKRAISMYQKM-----------NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-E 298 (341)
Q Consensus 231 iiVttP~~~s~~da~r~~~~~~~~-----------~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g 298 (341)
|+...|+.+.+.-...-+.|+..+ +.+.++++..| -+.+... .......+-+.||-.++ .
T Consensus 278 lIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr-------~d~~~~~-~~~v~~~lr~~fg~~Vl~~ 349 (405)
T PRK13869 278 VITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTR-------YEPQDAP-QTKVTALLRNMFEDHVLTN 349 (405)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-------ECCCCCH-HHHHHHHHHHHHHHHHHHC
T ss_conf 8648960878999999999999999999970788785404563140-------6899825-9999999999987888608
Q ss_pred ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 82799899975028821799779998999999999999
Q gi|254780831|r 299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336 (341)
Q Consensus 299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i 336 (341)
.||.+.+|.+++.....+....+..-..+.|++.-+.+
T Consensus 350 ~i~~S~ais~A~~~~~TvyE~~~~~~~r~Ty~Ra~e~~ 387 (405)
T PRK13869 350 PMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESL 387 (405)
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 07377999986874496287650527889999999999
No 43
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=99.90 E-value=7.6e-23 Score=172.25 Aligned_cols=224 Identities=24% Similarity=0.300 Sum_probs=159.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCEECCCCCCCCCC----CCCCCCCCCCCEEECCC
Q ss_conf 20102446665425789999898723577-50698822467876531000245631123----34457663223032233
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKG-KNVAILDADVYGPSIPKLLKISGKVEISD----KKFLKPKENYGIKIMSM 170 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~i~p~~~~gi~~~s~ 170 (341)
|=|||+ ||||.||||++.|+|.|||..| |||+++-||.-.-|.-.|+|-+..+++.| +..+..++.+ +++..
T Consensus 1 rqiAiY-GKGGIGKSTT~~N~~AAla~~gdkkVl~~GCDPKaDsTr~l~Gg~~~~TVLd~lre~G~ve~~~~e--~v~~~ 77 (278)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGDKKVLVVGCDPKADSTRLLLGGKAQPTVLDVLREKGAVEDVELE--DVIKE 77 (278)
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC--HHHEE
T ss_conf 948886-278867006888999999862495589972388520234651774455489999856871144510--22001
Q ss_pred CC----CCCCCCCC-----CCCCCCHH-HHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEE
Q ss_conf 34----35522100-----01342024-7899986752137-7758997455644421000000022-----34026742
Q gi|254780831|r 171 AS----LVDENVAM-----IWRGPMVQ-SAIMHMLHNVVWG-QLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVS 234 (341)
Q Consensus 171 g~----l~~~~~~~-----~~rg~~~~-~~l~~~l~~~~w~-~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVt 234 (341)
|| +++..-|- +.||-..+ .+|+++ .++-. ++|||+-|. .||+..- -.++| .+++-+||
T Consensus 78 Gf~girCVESGGPePGVGCAGRGvItai~lL~~~--g~y~dLdlD~V~YDV---LGDVVCG-GFAmP~R~g~A~eiYiVt 151 (278)
T TIGR01287 78 GFGGIRCVESGGPEPGVGCAGRGVITAIDLLEEL--GAYEDLDLDVVIYDV---LGDVVCG-GFAMPLREGLAQEIYIVT 151 (278)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHEEEEHHHHHC--CCCCCCCCCEEEEEE---CCCEEEC-CCCCHHHCCCCCEEEEEC
T ss_conf 6883188850768789520687112013377533--787311677689842---3655656-603610058865488860
Q ss_pred CCCCCHHHHH---HHHHHHH-HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHH
Q ss_conf 1443113456---6677764-00122114455442024587788665124776589999984797898827998999750
Q gi|254780831|r 235 TPQDLALIDV---KRAISMY-QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLS 310 (341)
Q Consensus 235 tP~~~s~~da---~r~~~~~-~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~ 310 (341)
+-+..|+--| .|.+.-+ ++=++..=|||-|- -......+ -.+.+|+++++++++.+|.|.-|.+|-
T Consensus 152 Sge~MAlYAANNI~kGI~kYa~~GGv~LGG~IcN~-----R~~~~e~E-----l~~~fA~~lgtq~i~~VPrs~~V~~AE 221 (278)
T TIGR01287 152 SGEMMALYAANNIAKGILKYAKSGGVRLGGIICNS-----RNVDDEKE-----LVDEFAKKLGTQLIHFVPRSNIVQKAE 221 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEECCEEECC-----CCCCCHHH-----HHHHHHHHHCCEEEEECCCCCCCHHHH
T ss_conf 34067899997887778999753882222478714-----57621789-----999999873770675217885212787
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2882179977999899999999999999
Q gi|254780831|r 311 DLGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 311 ~~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
-+++-+.+++|+|..|+.|++||++|.+
T Consensus 222 l~~~TVIE~dP~s~qA~~YR~LA~~I~~ 249 (278)
T TIGR01287 222 LEKKTVIEYDPESEQANEYRELAKKIYE 249 (278)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 3688456338871578999999999982
No 44
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.88 E-value=1.2e-21 Score=164.17 Aligned_cols=222 Identities=22% Similarity=0.321 Sum_probs=153.5
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC---C-------CCCC--CCC
Q ss_conf 420102446665425789999898723577506988224678765310002456311233---4-------4576--632
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK---K-------FLKP--KEN 162 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~---~-------~i~p--~~~ 162 (341)
.|+|||+ ||||.||||+|.|+++|||++|+||+++-||.-.-|...+||-...+++.+- + .+.. .+.
T Consensus 31 ~~~IAiY-GKGGIGKSTts~NlsAAlA~~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~dv~~~g 109 (329)
T cd02033 31 TQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKR 109 (329)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEEECC
T ss_conf 5499997-688435616889999999977996999788884603341058988840999998728864434250178625
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECC
Q ss_conf 23032233343552210001342024-78999867521377758997455644421000000022-----3402674214
Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQ-SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTP 236 (341)
Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP 236 (341)
+|+..+-.| -.++...-..||-..+ ..|+++ . ....++||++.|. .||+...= ...| .+++.+||.-
T Consensus 110 ~Gv~CvEsG-GPEPGvGCAGRGIItai~lLe~l-g-~~~~d~D~V~yDV---LGDVVCGG-FAmPiR~g~A~evyIVtSg 182 (329)
T cd02033 110 DGVFAMELG-GPEVGRGCGGRGIIHGFELLEKL-G-FHDWDFDYVLLDF---LGDVVCGG-FGLPIARDMAQKVIVVGSN 182 (329)
T ss_pred CCEEEEECC-CCCCCCCCCCCCHHHHHHHHHHC-C-CCCCCCCEEEEEC---CCCEEECC-CCCCCCCCCCCEEEEEECC
T ss_conf 998898667-99998767887301366787763-7-7525899999922---45356646-3353356876289999678
Q ss_pred CCCHHHHH---HHHHHHHHCC-C-CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHC
Q ss_conf 43113456---6677764001-2-21144554420245877886651247765899999847978988279989997502
Q gi|254780831|r 237 QDLALIDV---KRAISMYQKM-N-IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSD 311 (341)
Q Consensus 237 ~~~s~~da---~r~~~~~~~~-~-~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~ 311 (341)
+..|+.-| .|++.-|.+. + +.+.|+|.|. .+ +.+..+++|+.+++++|..||.|..+|+...
T Consensus 183 E~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~-------~~------~~~e~e~fa~~~g~~~l~~vP~d~~iRr~~~ 249 (329)
T cd02033 183 DLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINK-------DD------GTGEAQAFAAHAGIPILAAIPADEELRRKSA 249 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-------CC------CCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 0889998878999999998638971011598606-------88------7249999999719957996378778876543
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 8821799779998999999999999998
Q gi|254780831|r 312 LGIPIVVHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 312 ~g~P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
+..+ ...|+++++..|++||+++.+.
T Consensus 250 ~y~i--v~~p~~~~~~~f~~LA~~i~~~ 275 (329)
T cd02033 250 AYQI--VGRPGTTWGPLFEQLATNVAEA 275 (329)
T ss_pred HCCC--CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 0260--3487615899999999976127
No 45
>PRK10037 cell division protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=169.82 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=136.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC--CCC-----CCCCC--CCCCCCCCCEE
Q ss_conf 2010244666542578999989872357750698822467876531000245--631-----12334--45766322303
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG--KVE-----ISDKK--FLKPKENYGIK 166 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~--~~~-----~~~~~--~i~p~~~~gi~ 166 (341)
+||++.|.||||||||+++|||.+|++.|++|++||+|... .+-..||+.- ... .+... ........|+.
T Consensus 2 ~iial~s~kGGVGkTTltAnLA~aL~~~g~~VlaID~dpqN-~Lrlhfg~~~~~~~Gwa~a~l~g~~W~~a~~~~~~gl~ 80 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLD 80 (250)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCE
T ss_conf 37999607888768999999999999779918999578256-67875499854477299998569978999850569936
Q ss_pred ECCCCCCCCCCCCCC--CCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC-CCCEEEEECCCCCHH
Q ss_conf 223334355221000--134--202478999867521377758997455644421000000022-340267421443113
Q gi|254780831|r 167 IMSMASLVDENVAMI--WRG--PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIP-LSGVVIVSTPQDLAL 241 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~--~rg--~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~-~~~~iiVttP~~~s~ 241 (341)
+++.|-+...++... |.. +.+...+.++. + -+++|++|+|+|||.+... -+.+. .|-+++|.+|+..|.
T Consensus 81 ~LPfG~l~~~~~~~~~~~~~~~~~l~~~l~~l~-~--~~~~~~vliD~P~g~s~~~---~~~l~~AD~vLvVv~aDa~s~ 154 (250)
T PRK10037 81 LLPFGQLSIEEQENPQHWQTTLGDICSALQQLK-A--SGRYQWILLDLPRGASPLT---RQLLSLCDHSLAIVNVDANCH 154 (250)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-C--CCCCCEEEEECCCCCCHHH---HHHHHHCCEEEEEECCCHHHH
T ss_conf 972787998998638877651799999986200-2--5789989996599982999---999985787899836787789
Q ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEEC
Q ss_conf 4566677764001221-144554420245877886651247765899999847978988279989997502882179977
Q gi|254780831|r 242 IDVKRAISMYQKMNIP-IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHN 320 (341)
Q Consensus 242 ~da~r~~~~~~~~~~~-i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~ 320 (341)
.-. .+...| -..+++|- -.....+ +++..+.+.+.++--+.+.|..|+.+.|+...+.|+..+.
T Consensus 155 ~~L-------~q~~~~~g~~~liNq-------~~~~s~l-~~Dl~~l~~q~~~~llp~~IHrDeav~EAlA~~~~v~~y~ 219 (250)
T PRK10037 155 IRL-------HQQALPAGAHILIND-------LRIGSQL-QDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYR 219 (250)
T ss_pred HHH-------HHHCCCCCCCEEECC-------CCCHHHH-HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCCCC
T ss_conf 987-------342147898277516-------6711046-6999999997442415567517546899986599874759
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 999899999999999999
Q gi|254780831|r 321 MNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 321 p~s~~a~~~~~iA~~i~~ 338 (341)
|.|.+|+.|..+|.=.+-
T Consensus 220 P~SqAa~D~~~LA~W~l~ 237 (250)
T PRK10037 220 SDSLAAEEILTLANWCLL 237 (250)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 757788999999999998
No 46
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.1e-21 Score=162.59 Aligned_cols=224 Identities=26% Similarity=0.309 Sum_probs=155.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----C---CC-----CCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233----4---45-----766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----K---FL-----KPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~---~i-----~p~~~~ 163 (341)
|.|||+ ||||.||||++.|+|.|||..|+||+++-||...-|.-.++|-...|+..+. . .+ +-....
T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~ 80 (278)
T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG 80 (278)
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCC
T ss_conf 379996-2787673126778999999729817997479876327777478666569999986186445887782120678
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CC-CCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECC
Q ss_conf 30322333435522100013420247899986752-13-77758997455644421000000022-----3402674214
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VW-GQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTP 236 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w-~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP 236 (341)
|++.+-.| -.++.-.-..||-. .++ ++|.+. .+ .++||++.|. .||+...= ..+| .+++.+||+-
T Consensus 81 gv~CVEsG-GPepGvGCAGRGVi--tai-~~Le~lgaf~~~~DvviyDV---LGDVVCGG-FAmPiReg~AdeiyIVtSg 152 (278)
T COG1348 81 GVKCVESG-GPEPGVGCAGRGVI--TAI-NLLEELGAFEEDLDVVIYDV---LGDVVCGG-FAMPIREGYADEIYIVTSG 152 (278)
T ss_pred CEEEEECC-CCCCCCCCCCCHHH--HHH-HHHHHHCCCCCCCCEEEEEC---CCCEEECC-EEEEHHCCCCCEEEEEECC
T ss_conf 53774259-98999884651199--999-99998187301287899953---57734746-0002002666379999568
Q ss_pred CCCHHHHH---HHHHH-HHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCC
Q ss_conf 43113456---66777-640012211445544202458778866512477658999998479789882799899975028
Q gi|254780831|r 237 QDLALIDV---KRAIS-MYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDL 312 (341)
Q Consensus 237 ~~~s~~da---~r~~~-~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~ 312 (341)
+..|+--| .|.+. ..+.-++..-|+|-| .|...+...-.+.+++.++.++++.||+|..++++--+
T Consensus 153 e~MalYAANNI~kgi~k~a~~~~~rLgGiIcN----------sR~~~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~ 222 (278)
T COG1348 153 EMMALYAANNIAKGIRKYAKTGGVRLGGIICN----------SRSVDRERELVEAFAERLGTQLIHFVPRDNIVQKAELN 222 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC----------CCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHC
T ss_conf 35899998899999999873379631457745----------77764379999999998488527633512788999874
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 82179977999899999999999999
Q gi|254780831|r 313 GIPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 313 g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
|++++.++|+|..+..|++||++|.+
T Consensus 223 ~kTvie~~P~s~~a~~yr~LA~~I~~ 248 (278)
T COG1348 223 GKTVIEYAPDSNQAEEYRELAKKILE 248 (278)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 86611318462489999999999983
No 47
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246 This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=99.87 E-value=6.4e-22 Score=166.07 Aligned_cols=221 Identities=26% Similarity=0.384 Sum_probs=149.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---CCCC----CCCCCCCEEE-
Q ss_conf 2010244666542578999989872357750698822467876531000245631123---3445----7663223032-
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---KKFL----KPKENYGIKI- 167 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---~~~i----~p~~~~gi~~- 167 (341)
|+|||+ ||||.|||-+++||+..||.+|+||+++-||--.-|...|||=...|++.+ +++. ..+..+.|=+
T Consensus 1 r~iAiY-GKGG~GKSFtttNLs~~~A~mgkRVL~lGCDPKhDst~~LFGGislPT~~ev~~ekk~agreEev~~~dv~Fk 79 (355)
T TIGR02016 1 RIIAIY-GKGGIGKSFTTTNLSAKLALMGKRVLQLGCDPKHDSTSALFGGISLPTVIEVFAEKKEAGREEEVKVSDVVFK 79 (355)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 958897-4889866789899999999746823540578973322213678667508899999865187320566117872
Q ss_pred ---C--CCC-CCCCCCCCCCCCCC----CHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCC-----CCE
Q ss_conf ---2--333-43552210001342----0247--89998675213777589974556444210000000223-----402
Q gi|254780831|r 168 ---M--SMA-SLVDENVAMIWRGP----MVQS--AIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPL-----SGV 230 (341)
Q Consensus 168 ---~--s~g-~l~~~~~~~~~rg~----~~~~--~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~-----~~~ 230 (341)
+ |.+ |-++-.-|-+.||. ..+. +|+.| -=-.| ++|||++|- .||+..- --..|+ .++
T Consensus 80 ~~I~~~~~~vyg~ElGGPeVGRGCGGRGIi~GFd~LEKl-G~~~W-~~D~vlmDF---LGDVVCG-GFatPlaRslaeeV 153 (355)
T TIGR02016 80 RDIMNFAATVYGIELGGPEVGRGCGGRGIIFGFDLLEKL-GLFEW-ELDFVLMDF---LGDVVCG-GFATPLARSLAEEV 153 (355)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHC-CCCCC-CHHHEEEEC---CCCEEEC-CCCCHHHHHHHCCE
T ss_conf 336889874578881787115546875310102566552-74400-020002000---5867756-64431235320243
Q ss_pred EEEECCCCCHHHHH---HHHHHHHHCCC--CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHH
Q ss_conf 67421443113456---66777640012--21144554420245877886651247765899999847978988279989
Q gi|254780831|r 231 VIVSTPQDLALIDV---KRAISMYQKMN--IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMD 305 (341)
Q Consensus 231 iiVttP~~~s~~da---~r~~~~~~~~~--~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~ 305 (341)
|||+.=+-=|+-.+ ..+.+.|++++ ..++|+|+|. .+ |+|.++.+|++.++|+|..||+|.+
T Consensus 154 i~~~sNDrQSly~aNNic~A~~YFr~~GGr~~llGlvvNr-----------DD--GsG~A~~fA~~~gipvLa~iP~d~~ 220 (355)
T TIGR02016 154 IVVTSNDRQSLYVANNICSAAEYFRKLGGRSKLLGLVVNR-----------DD--GSGVAEAFAKEVGIPVLAKIPLDRK 220 (355)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-----------CC--CCCHHHHHHHHCCCCEEEECCCCCH
T ss_conf 7761374368888866988999998618860467889864-----------68--8718989898709934752676500
Q ss_pred HHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9975028821799779998999999999999998
Q gi|254780831|r 306 VRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 306 i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
+|.--++- -+.+.-|+ ...-|+++|..+..-
T Consensus 221 ~Rdmddsf-dfaiklPe--vGeP~K~lA~~i~~~ 251 (355)
T TIGR02016 221 VRDMDDSF-DFAIKLPE--VGEPFKELADDILLA 251 (355)
T ss_pred HCCHHCCC-HHEEECCC--CCCHHHHHHHHHHHH
T ss_conf 10000000-12020676--676478999999974
No 48
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.87 E-value=1.3e-21 Score=164.00 Aligned_cols=213 Identities=19% Similarity=0.217 Sum_probs=130.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCEECCCCCCCCCCCC---------------CCCC
Q ss_conf 201024466654257899998987235775069882-246787653100024563112334---------------4576
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD-ADVYGPSIPKLLKISGKVEISDKK---------------FLKP 159 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD-aDi~~ps~~~~lg~~~~~~~~~~~---------------~i~p 159 (341)
.||||+..||||||||+|+|||.+||..||||++|| .|-++ |...++|..+......+. .|.|
T Consensus 107 ~VIAVaNqKGGvGKTTTavnLA~~LAl~G~RVLlID~LDPQa-nlT~~~G~~pd~~~~~~~tl~~~~~~~~~~~~~~I~~ 185 (388)
T PRK13705 107 PVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDAAYAIKP 185 (388)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHEEEC
T ss_conf 289995278885599999999999997799089995878886-5643568888766564430247761466655450434
Q ss_pred CCCCCEEECCCCC-CCCCCCCCCC---CC--CCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 6322303223334-3552210001---34--202-478999867521377758997455644421000000022340267
Q gi|254780831|r 160 KENYGIKIMSMAS-LVDENVAMIW---RG--PMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVI 232 (341)
Q Consensus 160 ~~~~gi~~~s~g~-l~~~~~~~~~---rg--~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ii 232 (341)
....|+.+++... +..-+..+.. +| +.. ...++..+..+ +.+|||+||||||-.| .+|+....+.|.+|+
T Consensus 186 T~~~gLDlIPs~l~L~~~E~el~~~~~~~~~~~~~~~~Lr~aL~~v-~d~YD~IlIDcPPsLG--~LTiNAL~AAd~vlI 262 (388)
T PRK13705 186 TCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETV-AHDYDVIVIDSAPNLG--IGTINVVCAADVLIV 262 (388)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCHH--HHHHHHHHHHCEEEE
T ss_conf 7889979970898999999999775531232225899999999862-5039999995897177--999999998085486
Q ss_pred EECCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHCCCCCCCCCCEEECCCCCHHHH-H----HHHHCCCEE-EECCCCH
Q ss_conf 421443113456667776400122--1144554420245877886651247765899-9----998479789-8827998
Q gi|254780831|r 233 VSTPQDLALIDVKRAISMYQKMNI--PIIGMIENMSYFLASDTGKKYDLFGNGGARF-E----AEKIGIPFL-ESVPFDM 304 (341)
Q Consensus 233 VttP~~~s~~da~r~~~~~~~~~~--~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~-~----a~~~~i~~l-g~IP~d~ 304 (341)
-..|+.+.+.-...-+.|+..+-- ...|.-.+|.|++.. ++. +.+.... + -.-||-.++ ..++.+.
T Consensus 263 Pv~p~~lD~~S~~qFl~m~~~l~~~~~~~g~~~~~r~L~Tr-----~e~-~d~~q~~~m~~~lr~~fg~~vl~~~i~~S~ 336 (388)
T PRK13705 263 PTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTK-----YSN-ANGSQSPWMEEQIRDAWGSMVLKNVVRETD 336 (388)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-----CCC-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 78940776999999999999999998751777634899872-----589-998789999999999976777636225789
Q ss_pred HHHHHHCCCCCEEE
Q ss_conf 99975028821799
Q gi|254780831|r 305 DVRVLSDLGIPIVV 318 (341)
Q Consensus 305 ~i~~a~~~g~P~v~ 318 (341)
+|..++....-+..
T Consensus 337 aI~~A~~~~~TlyE 350 (388)
T PRK13705 337 EVGKGQIRMRTVFE 350 (388)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99872652073010
No 49
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.86 E-value=3.9e-21 Score=160.87 Aligned_cols=192 Identities=22% Similarity=0.344 Sum_probs=131.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC-C
Q ss_conf 996687847899999999999860676342355032223433322234654201024466654257899998987235-7
Q gi|254780831|r 45 ITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKN-K 123 (341)
Q Consensus 45 l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~-~ 123 (341)
+++..|..+..|.++.-=.+.+...... ..+ +-.|+|+|+|...|.||||++.|||.+||+ .
T Consensus 2 v~~~~P~s~~aEa~R~lRt~l~~~~~~~------------~~~-----~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~ 64 (207)
T TIGR03018 2 ITPNSPRSRIAEEFRKIKRPLLANAFSA------------NRK-----KNNNLIMVTSSLPGEGKSFTAINLAISLAQEY 64 (207)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHC------------CCC-----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 6458999989999999999876641010------------346-----78809999789999988999999999999724
Q ss_pred CCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 750698822467876531000245631123---------34457663223032233343552210001342024789998
Q gi|254780831|r 124 GKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHM 194 (341)
Q Consensus 124 G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~ 194 (341)
|+||+|||||++.|+++.+||+.+.+...+ +..+.+....++.++..|-..+....+ +.+..++++
T Consensus 65 ~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~~~~~l~vlpag~~~~~~~~l-----l~s~~~~~l 139 (207)
T TIGR03018 65 DKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPTEL-----LASQRMRSL 139 (207)
T ss_pred CCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCEEEEECCCCCCCHHHH-----HHHHHHHHH
T ss_conf 985999953578997100138899998567743899875672342688755575168989966765-----426999999
Q ss_pred HHHHCCCCCC--EEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 6752137775--89974556444--2100000002234026742144311345666777640012211445544
Q gi|254780831|r 195 LHNVVWGQLD--FLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIEN 264 (341)
Q Consensus 195 l~~~~w~~~D--~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~N 264 (341)
+.... ..|| |+|||+||-.+ |. ..+++ ..|++++|.....+...++.++++.++ +.+++|+|.|
T Consensus 140 i~~lr-~~yd~~~VIiDtPPvl~~~Da-~~la~--~~D~vllVvr~~~t~~~~v~~a~~~L~--~~~vlG~VlN 207 (207)
T TIGR03018 140 LHELA-RRYPDRIIIIDTPPLLVFSEA-RALAR--LVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHH-HHCCCCEEEEECCCCCCCHHH-HHHHH--HCCEEEEEEECCCCCHHHHHHHHHHHC--CCCEEEEEEC
T ss_conf 99999-737965799838962232369-99999--689699999799878999999999866--8980699969
No 50
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=99.85 E-value=6.1e-20 Score=152.88 Aligned_cols=219 Identities=24% Similarity=0.325 Sum_probs=141.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC--------CCCEECCCCCCCCCC----CCCCCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876--------531000245631123----3445766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS--------IPKLLKISGKVEISD----KKFLKPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps--------~~~~lg~~~~~~~~~----~~~i~p~~~~ 163 (341)
.|+||+ ||||+||||+|+|||+|||++|+||+-|-||.-.-| +|++..+=+.....- ...++-.-..
T Consensus 1 ~~lAvY-GKGGiGKSTTssNLSvA~A~~GkkVlQIGCDPKhDSTFTLtg~L~PTvidvL~~~~yH~E~v~~eD~iy~GY~ 79 (275)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVALAKKGKKVLQIGCDPKHDSTFTLTGKLIPTVIDVLDAVNYHYEDVEPEDVIYTGYG 79 (275)
T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEECCC
T ss_conf 968886-3888770046789999998469918985257888877454474167464422567630310333787783468
Q ss_pred CEEECCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HHHCCC-CCCEE
Q ss_conf 30322333----------4355221000134202478999867521377758997455644421000-000022-34026
Q gi|254780831|r 164 GIKIMSMA----------SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IAQKIP-LSGVV 231 (341)
Q Consensus 164 gi~~~s~g----------~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~~~~~-~~~~i 231 (341)
||..+-.| |-+.+ --|.|++| ++ +.+||+++.|. .||+..- .+.-+. .|-++
T Consensus 80 GVd~vEaGGPPAGsGCGGYVVGe----------TVKLLke~--~~-~~~yDVilFDV---LGDVVCGGFAaPL~YAd~aL 143 (275)
T TIGR01281 80 GVDCVEAGGPPAGSGCGGYVVGE----------TVKLLKEL--DV-LDEYDVILFDV---LGDVVCGGFAAPLQYADYAL 143 (275)
T ss_pred CEEEEECCCCCCCCCCCCEEECC----------HHHHHHHC--CH-HHHCCEEEEEE---CCCEEECCCCCHHHHHCCEE
T ss_conf 56887147368988898747152----------24556652--63-34289799962---57555175464112321256
Q ss_pred EEECCCCCHHHHHHHHHH----HHHC-CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf 742144311345666777----6400-12211445544202458778866512477658999998479789882799899
Q gi|254780831|r 232 IVSTPQDLALIDVKRAIS----MYQK-MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341)
Q Consensus 232 iVttP~~~s~~da~r~~~----~~~~-~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341)
||+.=+==|+=-|-|... -.+. +.++..|||-|. |. .+|- =|.+-.+++.++.+.|+|+.+|.-+.|
T Consensus 144 vva~NDFDalFAANRia~av~~K~~~Gy~vkLAGiIaNR----~~---~~yG-GGtdlle~F~~~~~~~~l~~~P~~d~I 215 (275)
T TIGR01281 144 VVAANDFDALFAANRIAAAVREKAKSGYDVKLAGIIANR----VD---KEYG-GGTDLLEKFAERVGTPVLGVVPRLDEI 215 (275)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC----CC---CCCC-CCCCHHHHHHHHCCCCEEEECCCHHHC
T ss_conf 661077217899999999999984179707873266312----11---3117-871568999986288322007771110
Q ss_pred HHHHCCCCCEEEECCC----CHHHHHHHHHHHHHHHH
Q ss_conf 9750288217997799----98999999999999998
Q gi|254780831|r 307 RVLSDLGIPIVVHNMN----SATSEIYQEISDRIQQF 339 (341)
Q Consensus 307 ~~a~~~g~P~v~~~p~----s~~a~~~~~iA~~i~~~ 339 (341)
|+|=-+|.-+-+-+|. ....+.|++||+.|+++
T Consensus 216 R~SRl~g~TlFEmee~~p~~~~~~~~y~~~A~~LL~~ 252 (275)
T TIGR01281 216 RRSRLKGKTLFEMEESGPELEEVTAEYLKMAEYLLAK 252 (275)
T ss_pred CHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 2010158612301589965889999999999999863
No 51
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.85 E-value=2.6e-21 Score=162.02 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=128.7
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCEECCCCCCCCCCCC---------------CCC
Q ss_conf 4201024466654257899998987235775069882-246787653100024563112334---------------457
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD-ADVYGPSIPKLLKISGKVEISDKK---------------FLK 158 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD-aDi~~ps~~~~lg~~~~~~~~~~~---------------~i~ 158 (341)
-.||||++.||||||||+|+|||.+||.+||||++|| .|-++ |...+||..+......+. .|.
T Consensus 106 ~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~ID~lDPQa-slS~~~G~~pd~~~~~~~t~~~~~~~~~~~~~~~I~ 184 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIK 184 (387)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHEE
T ss_conf 5289986168877699999999999997699689995988520-043145888876646554135776157555776033
Q ss_pred CCCCCCEEECCCCC-CCCCCCCC-----CCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEE
Q ss_conf 66322303223334-35522100-----0134202-47899986752137775899745564442100000002234026
Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDENVAM-----IWRGPMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVV 231 (341)
Q Consensus 159 p~~~~gi~~~s~g~-l~~~~~~~-----~~rg~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~i 231 (341)
|..-.|+.+++... |..-+..+ ..+.+.. ...++.-|..+ +++|||+||||||..| -||+....+.|++|
T Consensus 185 ~T~~~gLDlIPa~l~L~~~E~el~~~~~~~~~~~~~~~~L~~aL~~v-~d~YDvVlIDcPPsLG--~LTlNAL~AAd~vl 261 (387)
T PHA02519 185 PTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESV-WDNYDIIVIDSAPNLG--TGTINVVCAADVIV 261 (387)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCHH--HHHHHHHHHCCEEE
T ss_conf 68989967974888999999999878743142234899999998752-3469989997997368--99999999829658
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH------HCCCCCCCCCCEEECCCCCHHHHH----HHHHCCCEE-EEC
Q ss_conf 742144311345666777640012211445544------202458778866512477658999----998479789-882
Q gi|254780831|r 232 IVSTPQDLALIDVKRAISMYQKMNIPIIGMIEN------MSYFLASDTGKKYDLFGNGGARFE----AEKIGIPFL-ESV 300 (341)
Q Consensus 232 iVttP~~~s~~da~r~~~~~~~~~~~i~GiV~N------Ms~~~~~~~~~~~~~fg~~~~~~~----a~~~~i~~l-g~I 300 (341)
|.+.|+.+.+.-...-+.|+..+ ++.|.. +-|++. ++++-.....+.+ -+-||-.+| ..+
T Consensus 262 IPv~p~~ld~~S~~qFl~m~~~l----~~~v~~~g~~~~~r~LiT-----r~ep~d~~q~~~m~~~lR~~fg~~vl~~~i 332 (387)
T PHA02519 262 VATPAELFDYVSVLQFFTMLLDL----LATVDLGGFEPVVRLLLT-----KYSLTVGNQSRWMEEQIRNTWGSMVLRQVV 332 (387)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCEEEEEE-----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68896387799999999999999----999862378750468775-----358999888999999999998788864623
Q ss_pred CCCHHHHHHHCCCCCEEE
Q ss_conf 799899975028821799
Q gi|254780831|r 301 PFDMDVRVLSDLGIPIVV 318 (341)
Q Consensus 301 P~d~~i~~a~~~g~P~v~ 318 (341)
+.+.+|.+|+....-+..
T Consensus 333 ~~S~aI~~A~~~~qTlYE 350 (387)
T PHA02519 333 RVTDEVGKGQIKMRTVFE 350 (387)
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 587999973651274121
No 52
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=99.82 E-value=1.2e-20 Score=157.50 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=77.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC-CCCCCC-CEEECCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445-766322-3032233343
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL-KPKENY-GIKIMSMASL 173 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i-~p~~~~-gi~~~s~g~l 173 (341)
+||+|++.||||||||+|+|||.+|+++|+||+++|+|.+..|....++-. ....+...+ .|...+ .+.... ..+
T Consensus 1 hIIaVaNqKGGvGKTTtavnLA~aLA~~G~rVllIDlDpqq~slt~~l~nr--~~~~~~~~~~l~~P~~~~l~~~~-~~~ 77 (261)
T pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYIENR--AATAERTGLDLPVPKHLCLPDDV-SEV 77 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCCCCHHH-HHH
T ss_conf 979997178987299999999999998899789997999998512344303--55655138653466534455067-776
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCC
Q ss_conf 55221000134202478999867521377758997455644421000000022340267421443
Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQD 238 (341)
Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~ 238 (341)
....... ...+++.+.... .+|||++|||||..| .|+.......|.+|+...++-
T Consensus 78 ~~~~~~~-------~~~L~~al~~l~-~~yDfIlIDcPPsl~--~Lt~nAl~aAD~vIiPlq~sf 132 (261)
T pfam09140 78 FDGESAD-------DARLEEAVADLE-QDADFIVIDTPGSDS--PLSRLAHSRADTLVTPLNDSF 132 (261)
T ss_pred HHHHHHH-------HHHHHHHHHHHH-CCCCEEEEECCCCCC--HHHHHHHHHHCEEEECCCHHH
T ss_conf 1345578-------999999999987-579999996998573--999999998398763244015
No 53
>TIGR02945 SUF_assoc FeS assembly SUF system protein; InterPro: IPR014291 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry is a subset of the larger DUF59 family. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here are all found as part of the FeS assembly SUF system locus, in a subset of SUF-positive proteobacteria. .
Probab=99.73 E-value=3.2e-18 Score=141.39 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 9999987203384797643635876556988-998999999668784789999999999986067634235503222343
Q gi|254780831|r 7 NQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85 (341)
Q Consensus 7 ~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~ 85 (341)
++|.++||+|+|||++.||.||||||.|+|+ +++|+|+||||+|+||.+..+-..+++++.+++||+.|+|++++.+.|
T Consensus 1 ~~~i~alktVYDPEIPvnIYeLGLIY~i~i~Dd~~V~I~MTLTaPgCPvAgemP~~V~~aV~~v~GV~~v~VelvwdPPW 80 (96)
T TIGR02945 1 EEVIEALKTVYDPEIPVNIYELGLIYKIEISDDRHVHIDMTLTAPGCPVAGEMPGWVEDAVGQVPGVSSVEVELVWDPPW 80 (96)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 92455420268998876610358675887658986788775178568422452268899733388985025776767866
Q ss_pred CCCCC
Q ss_conf 33222
Q gi|254780831|r 86 PQQRN 90 (341)
Q Consensus 86 ~~~~~ 90 (341)
...+=
T Consensus 81 ~~~RM 85 (96)
T TIGR02945 81 DMDRM 85 (96)
T ss_pred CCCCC
T ss_conf 92336
No 54
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=99.72 E-value=1.1e-17 Score=137.78 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=99.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCCCEEECCC---
Q ss_conf 2010244666542578999989872357750698822467876531000245--63112334457663223032233---
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG--KVEISDKKFLKPKENYGIKIMSM--- 170 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~--~~~~~~~~~i~p~~~~gi~~~s~--- 170 (341)
|+|-+ +|||||||||+|+-+|+.+|+.|+||+++-.|. .+|+...||.+- .|..... ..++..+-+
T Consensus 2 r~i~~-~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDP-AhsL~D~~~~~~g~~pt~V~~-------~~nL~a~eiD~~ 72 (304)
T pfam02374 2 RWIFF-GGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDP-AHSLSDSFNQKFGHEPTKIKG-------VENLSAMEIDPQ 72 (304)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHCCCCCCCCEEECC-------CCCCEEEEECHH
T ss_conf 19999-579857489999999999995899299994697-214889848867999615158-------898279872789
Q ss_pred --------------C-CC----CCC---CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHH-------
Q ss_conf --------------3-43----552---210001342024789998675213777589974556444210000-------
Q gi|254780831|r 171 --------------A-SL----VDE---NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTI------- 221 (341)
Q Consensus 171 --------------g-~l----~~~---~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl------- 221 (341)
. .+ .+. +....+-|---.-++..+..-..-++||++|+|||| ||.. |.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~al~~i~~~~~~~~yD~VV~DtaP-TGht-LrlL~lP~~l 150 (304)
T pfam02374 73 MELEEYRGEVQDPINAVLGADMLEGILAEELSSLPGIDEIASFDEFKKYMDEGEYDVVIFDTAP-TGHT-LRLLSLPTVL 150 (304)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHH-HHHHCCHHHH
T ss_conf 9999999999999986512212667899998369989999999999999971788769966898-1779-9886168999
Q ss_pred -----------------------------------------------HHCC---CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf -----------------------------------------------0002---23402674214431134566677764
Q gi|254780831|r 222 -----------------------------------------------AQKI---PLSGVVIVSTPQDLALIDVKRAISMY 251 (341)
Q Consensus 222 -----------------------------------------------~~~~---~~~~~iiVttP~~~s~~da~r~~~~~ 251 (341)
.+.+ ..+..++|++|+.+++..+.|....+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~f~lV~~pe~~~i~Et~R~~~~L 230 (304)
T pfam02374 151 SWYLEKIIKLKNKIGPLAKPFKGPMGGSCLPEALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQEL 230 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999999899988999887740135676278999999999999999998549897499998379843799999999999
Q ss_pred HCCCCCHHHHHHHHCC
Q ss_conf 0012211445544202
Q gi|254780831|r 252 QKMNIPIIGMIENMSY 267 (341)
Q Consensus 252 ~~~~~~i~GiV~NMs~ 267 (341)
++.++|+-++|+|+-+
T Consensus 231 ~~~~i~v~~vvvNrvl 246 (304)
T pfam02374 231 AKYGIDVDAVIVNQVL 246 (304)
T ss_pred HHCCCCCCEEEECCCC
T ss_conf 9779988979880778
No 55
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.71 E-value=1.3e-17 Score=137.27 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=85.5
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 010244666542578999989872357-7506988224678765310002456311233445766322303223334355
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
||++.|+||||||||+|+|||.+||+. |+||+|+|+|++...
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf 9899728998668999999999999841993899965467799-------------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 22100013420247899986752137775899745564442100000002234026742144311345666777640012
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341)
||+++|+|++..+..+... -+.|.+++|++|+-.++.+++|.+++++.++
T Consensus 44 ----------------------------d~VVvD~~~~~~~~~~~al--~~ad~i~lv~~~~lp~lrn~kr~l~~l~~l~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAAL--DQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEECCCCCCCHHHHHHH--HHCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf ----------------------------7899918655388999999--8679799980677489997999999999849
Q ss_pred CC---HHHHHHH
Q ss_conf 21---1445544
Q gi|254780831|r 256 IP---IIGMIEN 264 (341)
Q Consensus 256 ~~---i~GiV~N 264 (341)
.| -+-+|+|
T Consensus 94 ~~~~~ki~lVvN 105 (106)
T cd03111 94 YSLPAKIELVLN 105 (106)
T ss_pred CCCCCCEEEEEC
T ss_conf 997365699857
No 56
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.70 E-value=4.3e-16 Score=127.25 Aligned_cols=223 Identities=21% Similarity=0.272 Sum_probs=154.5
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCC---CCCC
Q ss_conf 42010244666542578999989872357-750698822467876531000245631123---------3445---7663
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFL---KPKE 161 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i---~p~~ 161 (341)
.|++++.|.|||+|-||+|.|+|.+++.. ++.|+|+|.|..+.+...+|+.++.-...+ ...+ .---
T Consensus 104 ~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~ 183 (366)
T COG4963 104 GRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRL 183 (366)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 32899996058866689999999998641487389997688876123430787214589886097876078777898616
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 22303223334355221000134202478999867521377758997455644421000000022340267421443113
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
..|+++.+.- ++..... ..-......++. ..-+-+|++|+|+|=.-.|- +..-....+.+++|.+|...|+
T Consensus 184 ~~~l~ll~a~--~~~~~~~----d~~~~~~~~Ll~-~~~~~~~~vV~Dlp~~~~~~--t~~vL~~Sd~iviv~e~sl~sl 254 (366)
T COG4963 184 ASGLKLLAAP--TELAKNY----DLKTGAVERLLD-LLRGSFDFVVVDLPNIWTDW--TRQVLSGSDEIVIVAEPSLASL 254 (366)
T ss_pred CCCCEEECCC--CCHHHHC----CCCCCHHHHHHH-HHHCCCCEEEECCCCCCCHH--HHHHHHCCCEEEEEECCCHHHH
T ss_conf 8876330377--4456521----533126999999-76402883897189766258--9999862884999963638989
Q ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH-HHHCCCCCEEE
Q ss_conf 4566677764001221--14455442024587788665124776589999984797898827998999-75028821799
Q gi|254780831|r 242 IDVKRAISMYQKMNIP--IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR-VLSDLGIPIVV 318 (341)
Q Consensus 242 ~da~r~~~~~~~~~~~--i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~-~a~~~g~P~v~ 318 (341)
..+++-++.+++++.+ -.-+|.|. -..... ...+++.+.++++.++.+|+|+.+. .+.++|.++..
T Consensus 255 R~ak~lld~l~~~r~~~~~p~lv~n~-----~~~~~~------~~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E 323 (366)
T COG4963 255 RNAKELLDELKRLRPNDPKPILVLNR-----VGVPKR------PEPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSE 323 (366)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEE-----CCCCCC------CCHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999999999737798895688652-----278889------9999998884884001366770544444206960222
Q ss_pred ECCCCHHHHHHHHHHHHHH
Q ss_conf 7799989999999999999
Q gi|254780831|r 319 HNMNSATSEIYQEISDRIQ 337 (341)
Q Consensus 319 ~~p~s~~a~~~~~iA~~i~ 337 (341)
-+|.+|+++++..+|.++-
T Consensus 324 ~~~~~~~~k~l~~la~~l~ 342 (366)
T COG4963 324 VDPGSPAAKALAQLAQSLG 342 (366)
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 3778758899999999853
No 57
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.69 E-value=1.5e-16 Score=130.36 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-----CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 20289999987203384797643635876556988-----9989999996687847899999999999860676342355
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-----HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVV 77 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-----~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V 77 (341)
+..|++|+++|++|+|||++.|||+||+||++.++ +++|.|+|+||+++||..+.|.++++.+++.+|++++++|
T Consensus 72 ~~~E~~vweaLk~V~DPEIpVnIVdLGLIY~v~i~~~~~~~~~V~I~MTLTapgCpmg~~i~~dv~~~v~~v~~v~~v~V 151 (174)
T TIGR03406 72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEV 151 (174)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 42099999998415598887544863025799987647889779999960479998317999999999977999664999
Q ss_pred ECCCCCCCCCCC
Q ss_conf 032223433322
Q gi|254780831|r 78 TLTENKNPPQQR 89 (341)
Q Consensus 78 ~lt~~~~~~~~~ 89 (341)
++++.+.|....
T Consensus 152 elV~dPpW~~dm 163 (174)
T TIGR03406 152 ELVFDPPWSREM 163 (174)
T ss_pred EEEECCCCCHHH
T ss_conf 999889989334
No 58
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=99.68 E-value=1.4e-16 Score=130.49 Aligned_cols=131 Identities=24% Similarity=0.323 Sum_probs=82.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
+||+++|.|||+||||++.|||.+|++.|++|+++|+|-.++.....=.- ..+....|. ..+. ...
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a------~~~~~~~~~----~~v~----~~~ 67 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENA------LRKGTWDPA----CEIF----NAD 67 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH------HHCCCCCCC----CCEE----CCC
T ss_conf 37999617998659999999999999689959999689986889999987------646888876----5222----056
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113456667776400
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQK 253 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~ 253 (341)
+. +.+...++++ .-..|||+|||+||+.++...+.. ...|-+++.+.|.++-+..+.+++.+.++
T Consensus 68 -~~------~~l~~~~~~~----~~~~yD~VIIDtpg~~s~~~~~AI--~~ADlVLIP~qpSplD~~~a~~t~~~i~~ 132 (231)
T pfam07015 68 -EL------PLLEQAYEHA----EGSGFDYALADTHGGSSELNNTII--ASSDLLLIPTMLTPLDIDEALATYRYVIE 132 (231)
T ss_pred -CH------HHHHHHHHHH----HHCCCCEEEECCCCCCCHHHHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -60------1589999988----657999899839985758999999--97898997789982339999999999999
No 59
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.66 E-value=1.8e-16 Score=129.82 Aligned_cols=84 Identities=38% Similarity=0.581 Sum_probs=70.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
+|+++|.||||||||+++|||.+|++.|+||+++|+|-+
T Consensus 1 vi~~~n~KGGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-----------------------------------------
T ss_conf 999973899876899999999999977992999977988-----------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 2100013420247899986752137775899745564442100000002234026742144311345666777
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAIS 249 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~ 249 (341)
|||++|||||+.+....+ .....|.+++++.|+..++.-..+..+
T Consensus 40 --------------------------yD~iiIDtpp~~~~~~~~--al~~aD~viiP~~p~~~~~~~~~~~~~ 84 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRN--ALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred --------------------------CCEEEEECCCCCCHHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_conf --------------------------888999794999899999--999789999983698899999999999
No 60
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.64 E-value=6.1e-16 Score=126.23 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=80.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
+||+++|.|||+||||++.|||.+|++.|++|+++|+|-.++.... ... . ..+....|. ..+ +...
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W-~e~---a--~~~~~~~~~----~~v----~~~~ 67 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KEN---A--LRSNTWDPA----CEV----YAAD 67 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-HHH---H--HHCCCCCCC----CCE----EECC
T ss_conf 3799961899876999999999999978995999968998688999-987---6--525898877----523----4056
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113456667776400
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQK 253 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~ 253 (341)
+.+ .+..++++ ..-..|||+|||+||+.++..-+.. ...|-+|+.+.|.+.-+..+.+++++.++
T Consensus 68 -~~~------~l~~~~e~----~~~~~~D~VIIDtpg~~s~~~~~Ai--~~ADLVLIP~qPSp~D~~~a~~tv~~i~~ 132 (231)
T PRK13849 68 -ELP------LLEAAYED----AELQGFDYALADTHGGSSELNNTII--ASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231)
T ss_pred -CHH------HHHHHHHH----HHHCCCCEEEECCCCCCCHHHHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -525------78999988----7536998899818997758999999--97898997799986679999999999999
No 61
>pfam01883 DUF59 Domain of unknown function DUF59. This family includes prokaryotic proteins of unknown function. The family also includes PhaH from Pseudomonas putida. PhaH forms a complex with PhaF, PhaG, and PhaI, which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. So members of this family may all be components of ring hydroxylating complexes.
Probab=99.64 E-value=9.9e-16 Score=124.82 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 289999987203384797643635876556988-998999999668784789999999999986067634235503
Q gi|254780831|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTL 79 (341)
Q Consensus 5 t~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~l 79 (341)
.|++|+++|++|+|||++.||++|||||+|+++ ++.+.|.|++|+++||+.+.|.+++++++++++|+++|+|++
T Consensus 1 l~e~I~~aL~~V~DPEl~~~Iv~LGlI~~i~v~~~g~v~I~~~lT~~~CP~~~~i~~~i~~~l~~v~gv~~V~V~l 76 (76)
T pfam01883 1 LKEAILEALKTVIDPELPVDIVDLGLVYEVDIDDDGNVKVKMTLTTPGCPLADLIALDVREALLELPGVEDVEVEL 76 (76)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9789999982778999997800245368999857984999999589999837899999999998399940789979
No 62
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=122.65 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 6202899999872033847976436358765569889--98999999668784789999999999986067634235503
Q gi|254780831|r 2 NQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVH--NTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTL 79 (341)
Q Consensus 2 s~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~~--~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~l 79 (341)
.+.++++|+++|++|.|||++.||++||+||+|.+++ +.+.|+|++|+++||..+.|..+++++++.+++++.++|++
T Consensus 10 ~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V~l 89 (111)
T COG2151 10 IKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEVEL 89 (111)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 36669999998534779666603576310799997267746999995178888820788999999998468813079999
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 22234333222346
Q gi|254780831|r 80 TENKNPPQQRNNLN 93 (341)
Q Consensus 80 t~~~~~~~~~~~~~ 93 (341)
+.++.|....-...
T Consensus 90 ~~~p~Wt~~~ms~e 103 (111)
T COG2151 90 TLSPPWTPDRMSEE 103 (111)
T ss_pred EEECCCCHHHCCHH
T ss_conf 97079665543898
No 63
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.57 E-value=1.2e-14 Score=117.62 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=71.2
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 10244666542578999989872357750698822467876531000245631123344576632230322333435522
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341)
||| ||||||||||+|++||..|+++|++|+++|+|. .++|.-++.+. ..+..++.+|...+.+
T Consensus 2 ia~-~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp--~dlpe~~~~~~--------------~~~~~l~~lg~~~~~g 64 (116)
T cd02034 2 IAI-TGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--------------GEIKLLLVMGMGRPGG 64 (116)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHCEEC--------------CCCCEEEEEECCCCCC
T ss_conf 789-889977499999999999997899699998989--71235542331--------------7870799997343589
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 100013420247899986752137775899745564442100000002234026742
Q gi|254780831|r 178 VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVS 234 (341)
Q Consensus 178 ~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVt 234 (341)
..-. ...+..+++++++..-.++||+++||++|. +|++--..-..|-.++|+
T Consensus 65 ~GC~---C~~n~ll~~~l~~l~~~~~~~VvvD~eAGi--EHl~Rg~~~~vD~livVs 116 (116)
T cd02034 65 EGCY---CPENALLNALLRHLVLTRDEQVVVDTEAGL--EHLGRGTAEGVDLLVVVN 116 (116)
T ss_pred CCEE---CCHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHCCHHHCCCEEEEEC
T ss_conf 9408---825789999999970679989999678548--777300664399999969
No 64
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=99.51 E-value=1.2e-14 Score=117.49 Aligned_cols=153 Identities=24% Similarity=0.360 Sum_probs=96.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCEEC----CCCCCCC----------------CC-CC--
Q ss_conf 44666542578999989872357--750698822467876531000----2456311----------------23-34--
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYGPSIPKLLK----ISGKVEI----------------SD-KK-- 155 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~ps~~~~lg----~~~~~~~----------------~~-~~-- 155 (341)
..|||||||||+|+-.|+-||++ |+||+||=.|. .+|+...|+ .+.+.-. .+ +.
T Consensus 2 ~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STDP-AHsL~D~F~~e~G~~~~kv~g~eNL~~~EIDp~~al~~y~~rv 80 (330)
T TIGR00345 2 FGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTDP-AHSLSDVFEQELGHEPTKVKGVENLSAVEIDPQAALEEYRARV 80 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CHHHHHHHHHHHCCCCCEEECCCCCEEEEECHHHHHHHHHHHH
T ss_conf 778788238889999999998518997799984086-0027886113217773032058985555103789999879999
Q ss_pred -CC-CCCCCC-CEEE-------CCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCC---CCEEEEECCC
Q ss_conf -45-766322-3032-------233-------34355221000134202478999867521---377---7589974556
Q gi|254780831|r 156 -FL-KPKENY-GIKI-------MSM-------ASLVDENVAMIWRGPMVQSAIMHMLHNVV---WGQ---LDFLLIDMPP 212 (341)
Q Consensus 156 -~i-~p~~~~-gi~~-------~s~-------g~l~~~~~~~~~rg~~~~~~l~~~l~~~~---w~~---~D~liiD~pp 212 (341)
++ .++... ...+ ++. |.+.+-|. .-++.+|.+... .++ ||+||+||+|
T Consensus 81 f~~~~~i~~~~~~~~~~~l~~ql~~~~~~dltGsiPGiDE---------~~~F~~~~k~~~~~~~~e~etyD~vIfDTAP 151 (330)
T TIGR00345 81 FKLKEQIKQNLSLGVVDMLEDQLEGAALSDLTGSIPGIDE---------IAAFDEFLKHMDEAELNERETYDVVIFDTAP 151 (330)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 9999998606788732027999998777752279985889---------9999999987654321567623468871697
Q ss_pred CCCCCCCHHHHCC---------------------------------------------------------------CCCC
Q ss_conf 4442100000002---------------------------------------------------------------2340
Q gi|254780831|r 213 GTGDAHLTIAQKI---------------------------------------------------------------PLSG 229 (341)
Q Consensus 213 G~gd~~lsl~~~~---------------------------------------------------------------~~~~ 229 (341)
||-. |.+.+.- .-+.
T Consensus 152 -TGHT-LRLL~lP~~~~~~~~~~~k~~~~~g~~~~~~~~~Lpf~G~~~~l~~~~~l~~~~e~Ke~~~~~~~~l~DP~~T~ 229 (330)
T TIGR00345 152 -TGHT-LRLLQLPEVLSKFLEKFIKLREKLGPMLKLFKELLPFMGAGESLEDDEALEKLEELKEQIEAAREVLSDPERTS 229 (330)
T ss_pred -CHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf -4677-75310023679999874356777889887664105789898878778999989999999999999724998516
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 267421443113456667776400122114455442
Q gi|254780831|r 230 VVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 230 ~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
..+|++||.+++..+.|++.-++++++++=.||+|-
T Consensus 230 f~~V~~pE~~~l~E~~R~~~~L~~Y~~~~~~vIvN~ 265 (330)
T TIGR00345 230 FVLVVIPEKMSLYESERAHKELKKYGIKVDAVIVNQ 265 (330)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 888860262427899999999986498504478702
No 65
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.50 E-value=8e-14 Score=112.12 Aligned_cols=169 Identities=25% Similarity=0.393 Sum_probs=98.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCC--CCCC-CCCCCC---CCC---CCCCC--
Q ss_conf 201024466654257899998987235775069882246787653100024--5631-123344---576---63223--
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKIS--GKVE-ISDKKF---LKP---KENYG-- 164 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~--~~~~-~~~~~~---i~p---~~~~g-- 164 (341)
||+. .+|||||||||+|+-+|+.+|+.|+||+++=.| -.+|+...|+.+ ..+. +.++-. +-| .+.+.
T Consensus 3 riv~-f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD-PAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~ 80 (322)
T COG0003 3 RIVF-FTGKGGVGKTTIAAATAVKLAESGKKVLLVSTD-PAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDE 80 (322)
T ss_pred EEEE-EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHH
T ss_conf 7999-936885458999999999999759907999848-98744765423047851125888754660689999999999
Q ss_pred E-EEC----CCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--------------------
Q ss_conf 0-322----3334--355221000134202478999867521377758997455644421--------------------
Q gi|254780831|r 165 I-KIM----SMAS--LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA-------------------- 217 (341)
Q Consensus 165 i-~~~----s~g~--l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~-------------------- 217 (341)
+ ..+ ..+. ..-.+....|.|---.-++.++..-..-++|||+|+|||| ||..
T Consensus 81 v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaP-TG~TLRlL~lP~~~~~~~~~~~~~ 159 (322)
T COG0003 81 VKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAP-TGHTLRLLSLPEVLGWYLEKLFKP 159 (322)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-HHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999974126554212578898609888999999999998752689889984897-087888741578899999852025
Q ss_pred C-----------CH-----H-----HHCC---------------C--CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 0-----------00-----0-----0002---------------2--340267421443113456667776400122114
Q gi|254780831|r 218 H-----------LT-----I-----AQKI---------------P--LSGVVIVSTPQDLALIDVKRAISMYQKMNIPII 259 (341)
Q Consensus 218 ~-----------ls-----l-----~~~~---------------~--~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~ 259 (341)
. .+ + .+.+ . .+...+|++|+..++..+.|+..-+.+.++|+-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~ 239 (322)
T COG0003 160 RRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVD 239 (322)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 78999976421144457767278999999999999999998750777883799966101155889999999987598643
Q ss_pred HHHHHHCC
Q ss_conf 45544202
Q gi|254780831|r 260 GMIENMSY 267 (341)
Q Consensus 260 GiV~NMs~ 267 (341)
+++.|..+
T Consensus 240 ~vi~n~~~ 247 (322)
T COG0003 240 AVIVNKIL 247 (322)
T ss_pred EEEEECCC
T ss_conf 15563136
No 66
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.28 E-value=6.4e-12 Score=99.42 Aligned_cols=80 Identities=43% Similarity=0.731 Sum_probs=63.0
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
+|+++ |||||||||+|+|||..|++.|+||+++|
T Consensus 1 ~i~~~-~~kGvGKTT~a~~La~~la~~g~~Vl~vD--------------------------------------------- 34 (99)
T cd01983 1 VIVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID--------------------------------------------- 34 (99)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEC---------------------------------------------
T ss_conf 98985-89977689999999999998899699986---------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 21000134202478999867521377758997455644421000-00002234026742144311345666777
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IAQKIPLSGVVIVSTPQDLALIDVKRAIS 249 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~~~~~~~~~iiVttP~~~s~~da~r~~~ 249 (341)
||+++|+||+.++.... .......+.++++++|+..+.....+...
T Consensus 35 ---------------------------d~iiiD~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (99)
T cd01983 35 ---------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTE 81 (99)
T ss_pred ---------------------------CCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_conf ---------------------------71788589988846899998787589589965984889999999999
No 67
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=99.23 E-value=2.6e-11 Score=95.41 Aligned_cols=163 Identities=20% Similarity=0.292 Sum_probs=109.9
Q ss_pred C-CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---CCCCCC--CC---CCCEE
Q ss_conf 2-010244666542578999989872357750698822467876531000245631123---344576--63---22303
Q gi|254780831|r 96 K-FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---KKFLKP--KE---NYGIK 166 (341)
Q Consensus 96 ~-iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---~~~i~p--~~---~~gi~ 166 (341)
+ +|++++..-++|||.++.|++.-+|.-|+|++|||+|+.-|.++.||+-..++...| +..-.+ +. ..++.
T Consensus 561 ~Pvv~~~~p~p~~Gks~i~an~aaliA~ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~~~~~~~~~~l~ 640 (778)
T TIGR01005 561 EPVVALASPLPDVGKSIIEANLAALIAAGGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLELDVKAEVAAKLD 640 (778)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 87588568888665688999999998326871787326776055564421478885375564246566303402367711
Q ss_pred ECCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCC-EE-EEECCCCCHH
Q ss_conf 22333---4355221000134202478999867521377758997455644421000000022340-26-7421443113
Q gi|254780831|r 167 IMSMA---SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSG-VV-IVSTPQDLAL 241 (341)
Q Consensus 167 ~~s~g---~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~-~i-iVttP~~~s~ 241 (341)
++..| .+......+ +++.+.-+++.+.. ..|||++||+||=.- .....-+.+..+ ++ +||.=+-+.+
T Consensus 641 ~l~~GGas~~~h~~~eL-----Laspa~~~l~~~ar-~~~D~vvvd~~~~~p--V~d~~a~a~la~~~lslvt~~~r~~~ 712 (778)
T TIGR01005 641 ILDAGGASLLRHNSSEL-----LASPAMVELVENAR-SAYDLVVVDVAAVAP--VADAKALAALADLVLSLVTEYDRSVV 712 (778)
T ss_pred HHHCCCCCCCCCCCCHH-----HCCHHHHHHHHHHH-HHCCEEEECCCHHHH--HHHHHHHHHCCCEEEHHEEEECCEEH
T ss_conf 23347612478884153-----21668899999886-518857745531248--99999974224200200111144104
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 4566677764001221144554420
Q gi|254780831|r 242 IDVKRAISMYQKMNIPIIGMIENMS 266 (341)
Q Consensus 242 ~da~r~~~~~~~~~~~i~GiV~NMs 266 (341)
...+..++-...+|..+.|||.||-
T Consensus 713 ~~~r~~~~~~~~~n~~v~gV~ln~l 737 (778)
T TIGR01005 713 ELVRELLKSLSRLNSEVLGVVLNKL 737 (778)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 4428877544531860456650455
No 68
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=99.19 E-value=7.1e-11 Score=92.44 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCCCCCC-CEEECCCEEEEEEECCEEEEE-EEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 33847976-436358765569889989999-99668784789999999999986067634235503222343332223
Q gi|254780831|r 16 LSIPGEKN-NIVEMQRLSEIFIVHNTVYLS-ITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNN 91 (341)
Q Consensus 16 V~DPel~~-dIv~lGlI~~I~I~~~~V~i~-l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~ 91 (341)
|-|||++. +|+|||||++|+++++-+.|. |+.|+.|||+.+.|+++|++++...+|+..|+|.++-.+.|+..-..
T Consensus 1 VPDPEiPv~s~~DLGmVR~V~v~g~G~~v~s~tPTySGCPA~~~i~~~i~~A~~~~GW~~~VeV~~~L~P~WTTdwIT 78 (152)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVEVDGEGVVVKSFTPTYSGCPALEVIRQDIRDALRALGWVEEVEVKTSLDPAWTTDWIT 78 (152)
T ss_pred CCCCCCCEEEEECCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 988887702211065343578647947988874587772368999999999997478975115887718987840027
No 69
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.81 E-value=2.6e-08 Score=75.38 Aligned_cols=188 Identities=19% Similarity=0.210 Sum_probs=100.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC----------CCEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 0102446665425789999898723577506988224678765----------310002456311233445766322303
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI----------PKLLKISGKVEISDKKFLKPKENYGIK 166 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~----------~~~lg~~~~~~~~~~~~i~p~~~~gi~ 166 (341)
+|-|+.---|||||++|+.|+.+|+++|++|+.+-.=-.|..- -..+|+... ...+.|..-..
T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~-----~~~~~p~~~~~-- 73 (223)
T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLD-----YELVNPYRFEE-- 73 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCC-----HHHHCCCCCCC--
T ss_conf 98998689997699999999999997899489975120489889972799999998089998-----67605402588--
Q ss_pred ECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCHHHHCCCC--CCEEEEECCCCCH
Q ss_conf 223334355221000134202-4789998675213777589974556444---210000000223--4026742144311
Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAHLTIAQKIPL--SGVVIVSTPQDLA 240 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~lsl~~~~~~--~~~iiVttP~~~s 240 (341)
-.| +..+....|..+ ...+.+-+.... .++|+++|.-.-|.. ...++..+.+.. .-+|+|+...--+
T Consensus 74 p~s------P~~aa~~~g~~i~~~~i~~~~~~l~-~~~d~vlvEGaGGl~~Pl~~~~~~~Dla~~l~~pvILV~~~~lG~ 146 (223)
T PRK00090 74 PLS------PHLAARLEGVTIDLEKISAALRELA-QQADLVLVEGAGGLLVPLTDDLTLADLAAQLQLPVILVVGVKLGC 146 (223)
T ss_pred CCC------HHHHHHHHCCCCCHHHHHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH
T ss_conf 989------8999999098468999999999998-318989994688655675678788999999688989997698880
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf 345666777640012211445544202458778866512477658999998479789882799899
Q gi|254780831|r 241 LIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341)
Q Consensus 241 ~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341)
+..+.-+++.+++.++++.|+|.|- ... ....+ ....+.+.+..++|+||.||+-+++
T Consensus 147 inhtllt~eal~~~gl~v~GvI~N~----~~~---~~~~~-~~~~~~l~~~~gvPvLG~iP~~~~~ 204 (223)
T PRK00090 147 INHTLLTLEAIRARGLPLAGWVANG----VPP---EGLRH-AENLATLAELLPAPLLGRLPYLAEL 204 (223)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEC----CCC---CHHHH-HHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9999998999996899489999968----588---36677-7689999985499889975899998
No 70
>KOG2825 consensus
Probab=98.68 E-value=5.7e-08 Score=73.13 Aligned_cols=160 Identities=26% Similarity=0.352 Sum_probs=88.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCC--CCCCCC---CCC---CCCCCCCCCEEE
Q ss_conf 201024466654257899998987235775069882246787653100024--563112---334---457663223032
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKIS--GKVEIS---DKK---FLKPKENYGIKI 167 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~--~~~~~~---~~~---~i~p~~~~gi~~ 167 (341)
|-|-| .|||||||||-|+.||+.||+-+.+|+++-.|. .+|+..-|+-. ..+... ++- -|-|.. ++.-
T Consensus 20 KwifV-GGKGGVGKTTcs~sLAvqla~~r~~vLiISTDP-AHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~--e~~~ 95 (323)
T KOG2825 20 KWIFV-GGKGGVGKTTCSCSLAVQLAKVRESVLIISTDP-AHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNV--EMGD 95 (323)
T ss_pred EEEEE-CCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHCCCCCCCCCHHHHEEEECCCCH--HHHH
T ss_conf 69997-676776765312689999861688647861685-3116788887751798303572231023228724--4415
Q ss_pred C------------C--CCCCCCCCCCCCCCC---CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH-------
Q ss_conf 2------------3--334355221000134---202478999867521377758997455644421000000-------
Q gi|254780831|r 168 M------------S--MASLVDENVAMIWRG---PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ------- 223 (341)
Q Consensus 168 ~------------s--~g~l~~~~~~~~~rg---~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~------- 223 (341)
+ + -|++.+ .+....| +|- .-+.++.+.--++|.++.||.| ||-. |.+.|
T Consensus 96 ~~~m~~~~~~n~~~~g~g~l~e--~~~~~Pgideams---fae~~klvk~~~F~~vVFDTAP-TGHT-LRlL~fP~~lek 168 (323)
T KOG2825 96 MPEMFGNAANNEGSDGKGMLQE--LANAFPGIDEAMS---FAEVMKLVKGMNFDVVVFDTAP-TGHT-LRLLQFPTTLEK 168 (323)
T ss_pred HHHHHHCCCCCCCCCCHHHHHH--HHHCCCCHHHHHH---HHHHHHHHHCCCCCEEEECCCC-CCCE-EHHHCCCHHHHH
T ss_conf 6787530021246652327999--8731888057775---8999988630664069951588-7641-025215268999
Q ss_pred -----------------------------------C--------------C---CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf -----------------------------------0--------------2---23402674214431134566677764
Q gi|254780831|r 224 -----------------------------------K--------------I---PLSGVVIVSTPQDLALIDVKRAISMY 251 (341)
Q Consensus 224 -----------------------------------~--------------~---~~~~~iiVttP~~~s~~da~r~~~~~ 251 (341)
. + ..+..+.|.-|+-+|+....|.+.=+
T Consensus 169 ~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL 248 (323)
T KOG2825 169 GLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQEL 248 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 99999889988788999876352545577778999999999999999997079987259998778888688899999999
Q ss_pred HCCCCCHHHHHHHHC
Q ss_conf 001221144554420
Q gi|254780831|r 252 QKMNIPIIGMIENMS 266 (341)
Q Consensus 252 ~~~~~~i~GiV~NMs 266 (341)
.+.+++.-.||+|--
T Consensus 249 ~k~~idthnIIVNQL 263 (323)
T KOG2825 249 AKQGIDTHNIIVNQL 263 (323)
T ss_pred HHCCCCCCCEEEEEC
T ss_conf 864886112013302
No 71
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.63 E-value=2.2e-07 Score=69.25 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=102.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC---CC-------------CCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631---12-------------3344576
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE---IS-------------DKKFLKP 159 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~---~~-------------~~~~i~p 159 (341)
|=+-|+.---+||||.+|+.|..+|++.|++|+.+--= --|.+..+. .. ....+.|
T Consensus 3 k~~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~KPV--------asG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP 74 (231)
T PRK12374 3 KRFFITGTDTSVGKTVVSRALLQALASQGKSVAGYKPV--------AKGSKETPEGLRNKDALVLQSVSTIELPYEAVNP 74 (231)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE--------ECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 64799878999539999999999999789948888568--------8399668998724789999987378999887197
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCC----CCC--CHHHHCCCCCCEEE
Q ss_conf 6322303223334355221000134202-4789998675213777589974556444----210--00000022340267
Q gi|254780831|r 160 KENYGIKIMSMASLVDENVAMIWRGPMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTG----DAH--LTIAQKIPLSGVVI 232 (341)
Q Consensus 160 ~~~~gi~~~s~g~l~~~~~~~~~rg~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~g----d~~--lsl~~~~~~~~~ii 232 (341)
.. +.+...+. ..+..+ ...+.+-+.... ..+|+++|.-.=|.- |.. ..+.+... --+|+
T Consensus 75 ~~-----------~~~~~aa~-~~~~~id~~~i~~~~~~l~-~~~d~vlVEGAGG~~vPl~~~~~~~Dl~~~l~-lPVIL 140 (231)
T PRK12374 75 IA-----------LSEEESSV-AHSCPINYTLISNGLANLT-DKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQ-LPVLM 140 (231)
T ss_pred CC-----------CCCCCCCH-HHCCCCCHHHHHHHHHHHH-HHCCEEEEECCCCEEECCCCCCHHHHHHHHCC-CCEEE
T ss_conf 66-----------88665774-4548578999999999988-55797999779862130476514999999839-99999
Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf 42144311345666777640012211445544202458778866512477658999998479789882799899
Q gi|254780831|r 233 VSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341)
Q Consensus 233 VttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341)
|+...--++.++.-+++..++-++++.|+|.|. ..++... | ....+.+.+..+.|+||.||+-++.
T Consensus 141 V~~~~LG~INHtLLT~eal~~~gl~l~G~I~N~---~~p~~~~----~-~e~i~~L~~~~~~P~LG~iP~l~~~ 206 (231)
T PRK12374 141 VVGIQEGCINHALLTAQAIANDGLPLIGWVANR---INPGLAH----Y-AEIIDVLGKKLPAPLIGELPYLPRA 206 (231)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE---ECCCHHH----H-HHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 988986848899999999997899579999983---6797046----7-8899999985599978868999998
No 72
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=98.39 E-value=4.8e-07 Score=66.93 Aligned_cols=237 Identities=17% Similarity=0.293 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEC----CCEEEEEEE--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 20289999987203384797643635----876556988--99899999966878478999999999998606763423-
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEM----QRLSEIFIV--HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNA- 75 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~l----GlI~~I~I~--~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v- 75 (341)
++||.+|.++|+.|.--=+..|+ ++ +||+.|.=. +.+|- .+-...+++..-+++.|-++=|-+..
T Consensus 20 ~itE~~i~~al~EiR~ALLeADV-nl~VvK~Fi~~V~ekA~G~eV~-------~~~~P~Qq~iKIV~eEL~~~LG~~~~E 91 (439)
T TIGR00959 20 TITEKNIKEALREIRLALLEADV-NLQVVKDFIKKVKEKALGQEVL-------KSLSPGQQFIKIVHEELVAILGGKGRE 91 (439)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHH-------CCCCCCHHEEHHHHHHHHHHCCCCCCC
T ss_conf 75889999999999998877315-7689999999888875225441-------267802012022468999851666732
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHH--HCCCCCEEEEEECCCCCCC-CCCEECCCCCCCCC
Q ss_conf 55032223433322234654201024466654257899998987--2357750698822467876-53100024563112
Q gi|254780831|r 76 VVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACA--LKNKGKNVAILDADVYGPS-IPKLLKISGKVEIS 152 (341)
Q Consensus 76 ~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~a--la~~G~~V~liDaDi~~ps-~~~~lg~~~~~~~~ 152 (341)
+..+.....+| -+|. +.|==|-||||++.=||+. +.+.|+||+|+=||+|-|. +..|--+-.+.
T Consensus 92 ~~~L~~~~~~P---------~vil-mvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~--- 158 (439)
T TIGR00959 92 SAELKLAEKRP---------TVIL-MVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQV--- 158 (439)
T ss_pred CCCCCCCCCCC---------EEEE-EECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHC---
T ss_conf 56755567868---------3899-7313788578899999999999863897034032103478999999976752---
Q ss_pred CCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC---------HHH
Q ss_conf 33445766322303223-33435522100013420247899986752137775899745564442100---------000
Q gi|254780831|r 153 DKKFLKPKENYGIKIMS-MASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHL---------TIA 222 (341)
Q Consensus 153 ~~~~i~p~~~~gi~~~s-~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~l---------sl~ 222 (341)
|+.+.+ .+.-.+++.|+- .+.+|+++.-. ..+||||||| .|--|+ .+=
T Consensus 159 -----------gVpvf~h~~~~~~p~~Pv~----ia~~Al~~Ak~----~~~D~vI~DT---AGRL~ID~~LM~EL~~iK 216 (439)
T TIGR00959 159 -----------GVPVFAHLGKGQSPDDPVE----IARQALEEAKE----NGFDVVIVDT---AGRLQIDEELMEELAEIK 216 (439)
T ss_pred -----------CCCCCCCCCCCCCCCCHHH----HHHHHHHHHHH----CCCCEEEEEC---CCCHHHHHHHHHHHHHHH
T ss_conf -----------8871100478889887789----99999999997----4897899726---751255599999999998
Q ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCH-HHHHHHHHCCCE
Q ss_conf 00223402674214431134566677764001221144554420245877886651247765-899999847978
Q gi|254780831|r 223 QKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGG-ARFEAEKIGIPF 296 (341)
Q Consensus 223 ~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~-~~~~a~~~~i~~ 296 (341)
..+.-+++++|. +-.+=.||..+-.-|.+ ++.+=|+|.-+ +. |. .+|| +..+.+-.|.|+
T Consensus 217 ~~~nP~EiLlVv--DaM~GQdAvn~A~~F~e-~lgltG~vltK--~D----GD-----aRGGAALS~~~~tg~PI 277 (439)
T TIGR00959 217 EILNPDEILLVV--DAMTGQDAVNTAKTFNE-RLGLTGVVLTK--LD----GD-----ARGGAALSVRSVTGKPI 277 (439)
T ss_pred HHHCCCEEEECC--HHCCHHHHHHHHHHHCC-CCCCCEEEEEC--CC----CC-----CHHHHHHHHHHHHCCCE
T ss_conf 886887054122--01021699999986366-00135478854--75----66-----05789999999968961
No 73
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.35 E-value=2.2e-06 Score=62.54 Aligned_cols=125 Identities=23% Similarity=0.275 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCC
Q ss_conf 65425789999898723577506988224678765310002456311233445766322303223--3343552210001
Q gi|254780831|r 105 GGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMS--MASLVDENVAMIW 182 (341)
Q Consensus 105 GGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s--~g~l~~~~~~~~~ 182 (341)
=|||||.+|+.|+.+|.++|++|+.+-- +..|+.-++- .|.+++-+.
T Consensus 8 T~VGKT~vt~~l~~~l~~~G~~v~~~KP---------------------------v~t~D~vlVEGaGG~~vPl~~---- 56 (134)
T cd03109 8 TDIGKTVATAILARALKEKGYRVAPLKP---------------------------VQTYDFVLVEGAGGLCVPLKE---- 56 (134)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECH---------------------------HHCCCEEEEECCCCEEECCCC----
T ss_conf 8876899999999999977991778756---------------------------672798999889774600389----
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 34202478999867521377758997455644421000000022340267421443113456667776400122114455
Q gi|254780831|r 183 RGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMI 262 (341)
Q Consensus 183 rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV 262 (341)
|+.+.|+ ++.+. .-+|+|+...--++..+.-+++.+++.++++.|+|
T Consensus 57 ---------------------~~~~~Dl-----------~~~l~-~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i 103 (134)
T cd03109 57 ---------------------DFTNADV-----------AKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVL 103 (134)
T ss_pred ---------------------CCCHHHH-----------HHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf ---------------------8629999-----------99709-99899977887858999999999998799288999
Q ss_pred HHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC
Q ss_conf 442024587788665124776589999984797898827
Q gi|254780831|r 263 ENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341)
Q Consensus 263 ~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341)
.|- + +++ . .. -+...+.+.+..++|++|.+|
T Consensus 104 ~N~-~--~~~-~---~~-~~~N~~~I~~~t~vPvLG~vP 134 (134)
T cd03109 104 GNV-I--VEK-E---GL-ATLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred EEC-C--CCC-C---HH-HHHHHHHHHHHHCCCEEEECC
T ss_conf 946-7--997-1---06-787599999974999778288
No 74
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.35 E-value=8.3e-06 Score=58.70 Aligned_cols=169 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
++|+.. |==|+||||+.+-||+.+.+.|++|+++-+|.|.|....=| ...-+ .-|+.+. ..
T Consensus 76 ~vI~lv-G~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQL------k~~a~-------~l~v~~~-----~~ 136 (270)
T PRK06731 76 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL------QDYVK-------TIGFEVI-----AV 136 (270)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH------HHHHH-------HHCCCEE-----CC
T ss_conf 189998-88989889999999999986799089998388888899999------99999-------8199535-----45
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-----CHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 2210001342024789998675213777589974556444--210-----000000223402674214431134566677
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-----LTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-----lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
.+.. -+..++..+-.. +.+|++||||+ |-. |.. ..+......+..++|.-- -+.-.|+....
T Consensus 137 ~~~~------~~~~~~~~~~~~---~~~DvilIDTA-GR~~~d~~lm~el~~~~~~~~p~~~~Lvlda-s~~~~~~~~~~ 205 (270)
T PRK06731 137 RDEA------AMTRALTYFKEE---ARVDYILIDTA-GKNYRASETVEEMIETMGQVEPDYICLTLSA-SMKSKDMIEII 205 (270)
T ss_pred CCHH------HHHHHHHHHHHH---CCCCEEEEECC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHH
T ss_conf 8878------999999999997---69999999799-9871469999999998606389879999868-77769999999
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE--E---CCCCHHH
Q ss_conf 76400122114455442024587788665124776589999984797898--8---2799899
Q gi|254780831|r 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLE--S---VPFDMDV 306 (341)
Q Consensus 249 ~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg--~---IP~d~~i 306 (341)
..|+. +++-|+|... .++... -|++-.++...+.|+.. . ||.|-.+
T Consensus 206 ~~f~~--~~i~gvIlTK-------lD~ta~---gG~als~~~~~~~PI~fig~Ge~VpeDi~~ 256 (270)
T PRK06731 206 TNFKD--IHIDGIVFTK-------FDETAS---SGELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred HHHCC--CCCCEEEEEC-------CCCCCC---CCHHHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf 98077--9998899965-------358997---729999999988597999459997021413
No 75
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.34 E-value=4.3e-06 Score=60.62 Aligned_cols=196 Identities=20% Similarity=0.350 Sum_probs=98.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 010244666542578999989872357750698822467876531000245631--123344576632230322333435
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE--ISDKKFLKPKENYGIKIMSMASLV 174 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~--~~~~~~i~p~~~~gi~~~s~g~l~ 174 (341)
-|.|++-..|+||||+++-|..+|+++|+||.-+-+ ||. . +++... ... .|. .++.. ++.
T Consensus 5 ~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~---GPD---y--Idp~~~~~a~g----~~~--~nLD~----~l~ 66 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV---GPD---Y--IDPAFHAAATG----RPS--RNLDS----WMM 66 (451)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCC---C--CCHHHHHHHHC----CCC--CCCCH----HHC
T ss_conf 799986899997899999999999968794575357---857---6--29899999978----975--35883----448
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------CCCHHHHCCCCCCEEEEECCCCCH--HHH
Q ss_conf 522100013420247899986752137775899745564442---------100000002234026742144311--345
Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGD---------AHLTIAQKIPLSGVVIVSTPQDLA--LID 243 (341)
Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd---------~~lsl~~~~~~~~~iiVttP~~~s--~~d 243 (341)
.+ ..+++.+.... .+.|+.||---=|.-| ....++..+. .-+|+|.-..-.+ +.-
T Consensus 67 ~~------------~~v~~~~~~~~-~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~l~-~PViLViD~~~~~~s~aa 132 (451)
T PRK01077 67 GE------------DLVRALFARAA-GGADIAVIEGVMGLFDGAGGDPDKGSTADIARLLG-APVVLVVDASGMAQSAAA 132 (451)
T ss_pred CH------------HHHHHHHHHHC-CCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCHHHHHHH
T ss_conf 99------------99999999754-66888998501011345456777777899998709-988999846620899999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCE-EECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCC
Q ss_conf 666777640012211445544202458778866-5124776589999984797898827998999750288217997799
Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSYFLASDTGKK-YDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMN 322 (341)
Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~-~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~ 322 (341)
..++...+.. +.+|.|+|.|.- .+.+ ..+ .+...|+.++|+||.||.++.+....+. --++...-.
T Consensus 133 ~v~G~~~~~~-~~~I~GvIlNk~------~g~~h~~l-----l~~~ie~~gvpvlG~lP~~~~l~lpeRH-LGLv~~~E~ 199 (451)
T PRK01077 133 LVLGFARFDP-DLNIAGVILNRV------GSERHYQL-----LREALEELGLPVLGALPRDAALALPERH-LGLVQASEI 199 (451)
T ss_pred HHHHHHHHCC-CCCEEEEEEECC------CCHHHHHH-----HHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCHHHH
T ss_conf 9999997597-787748996247------87668999-----9999986399579861576334564212-577670456
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 989999999999999
Q gi|254780831|r 323 SATSEIYQEISDRIQ 337 (341)
Q Consensus 323 s~~a~~~~~iA~~i~ 337 (341)
......+..+++.+.
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (451)
T PRK01077 200 ADLEARLDALADLVE 214 (451)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 668999999999998
No 76
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.32 E-value=4.6e-06 Score=60.38 Aligned_cols=196 Identities=18% Similarity=0.250 Sum_probs=96.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCC
Q ss_conf 201024466654257899998987235775069882246787653100024563112-3344576632230322333435
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS-DKKFLKPKENYGIKIMSMASLV 174 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~-~~~~i~p~~~~gi~~~s~g~l~ 174 (341)
|-|-|++--+|+|||+++.-|..+|.++|.||+.+=-=++..+- -+.+...... ..-.+.+.+..++... ..+.
T Consensus 2 rsIyIa~te~~sGKTsVaLGL~~aL~r~g~KVGfFKPI~q~~~~---~~~D~~i~Li~~~~~L~~~~~i~~s~a--~~ll 76 (702)
T PRK05632 2 RTIYLAPTGTGVGLTSVSLGLVRALERKGVKVGFFKPIAQPRPD---DGPDRSTELLRARLGLPYEEPLSLSYA--EELL 76 (702)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCCCCHHHHHHHHCCCCCCCCCCHHHH--HHHH
T ss_conf 36999627999879999999999998368847998335547888---997607999998559895336078899--9998
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 52210001342024789998675213777589974556444------210000000223402674214431134566677
Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG------DAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g------d~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
..++.- ..+.+.+.. ++... .++|++||.-.--++ +....+++.+. +.+|+|+.+..-+..+....+
T Consensus 77 ~~g~~D----~LlE~IV~~-y~~l~-~~~DvVLVEGs~~~~~~~~~~~lNa~IAknLg-A~VILV~~~~~~s~~el~d~i 149 (702)
T PRK05632 77 ASGQLD----VLLEEIVAR-YHALA-KDCDVVLVEGLVPTRKHPFALSLNAEIAKNLG-AEVILVSSGGNDTPEELAERI 149 (702)
T ss_pred HCCCHH----HHHHHHHHH-HHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHH
T ss_conf 689989----999999999-99975-38998999488878898604433599999769-988999638999999999999
Q ss_pred H----HHH-CCCCCHHHHHHHHCCCCCCCC--CCEE----ECCCC-CHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 7----640-012211445544202458778--8665----12477-6589999984797898827998999
Q gi|254780831|r 249 S----MYQ-KMNIPIIGMIENMSYFLASDT--GKKY----DLFGN-GGARFEAEKIGIPFLESVPFDMDVR 307 (341)
Q Consensus 249 ~----~~~-~~~~~i~GiV~NMs~~~~~~~--~~~~----~~fg~-~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341)
+ .|. .-+.+++|+|.|. |+.. ++-. ..|.. .....+-+.-+++++|.||+++.+.
T Consensus 150 ~ia~~~f~~~k~~~vlGvIiNr----v~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~lLGvIP~~p~L~ 216 (702)
T PRK05632 150 ELAARSFGGAKNANILGVIINK----VNADEQGRTRPDLSEIFDDSSKAAQLFASSPLPLLGVVPWSPDLI 216 (702)
T ss_pred HHHHHHHHHCCCCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 9999985230699789999847----982355566788998644333321133227987699847960027
No 77
>PRK10416 cell division protein FtsY; Provisional
Probab=98.31 E-value=3.2e-05 Score=54.82 Aligned_cols=162 Identities=20% Similarity=0.334 Sum_probs=89.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
.||.+. |=-|+||||+..-||..|.+.|++|+|.-+|.|.|..-.=|.+ .....|+.+++-.. +
T Consensus 296 ~VIl~v-GvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~-------------w~~r~~v~vi~~~~--g 359 (499)
T PRK10416 296 FVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV-------------WGQRNNIPVIAQHT--G 359 (499)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH-------------HHCCCCCEEEECCC--C
T ss_conf 799997-4787878989999999999779953788406675689999999-------------84245736983689--9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC--------HHHHCC---CCCCEEEEECCCCCHHH
Q ss_conf 2210001342024789998675213777589974556444--2100--------000002---23402674214431134
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL--------TIAQKI---PLSGVVIVSTPQDLALI 242 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l--------sl~~~~---~~~~~iiVttP~~~s~~ 242 (341)
.|.+- .+..++...-. .++|+|||||. |-= +.+| .+.+.. .-+..++|.- .+.=.
T Consensus 360 ~Dpa~-----V~~dai~~a~~----~~~DvviiDTA-GRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlD--a~tGQ 427 (499)
T PRK10416 360 ADSAS-----VIFDAIQAAKA----RNVDVLIADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID--ASTGQ 427 (499)
T ss_pred CCHHH-----HHHHHHHHHHH----CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--CCCCH
T ss_conf 99799-----99999999997----29998998577-643260999999999999997237899974899977--87677
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCC-HHHHHHHHHCCCEE
Q ss_conf 56667776400122114455442024587788665124776-58999998479789
Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNG-GARFEAEKIGIPFL 297 (341)
Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~-~~~~~a~~~~i~~l 297 (341)
++......|.+ .+++-|+|... ++ |. .+| .+-.++..+++|+.
T Consensus 428 na~~qak~F~e-~~~ltGiIlTK----lD--Gt-----AKGG~~lsi~~~~~~PI~ 471 (499)
T PRK10416 428 NAVSQAKLFHE-AVGLTGITLTK----LD--GT-----AKGGVIFSVADQFGIPIR 471 (499)
T ss_pred HHHHHHHHHHH-CCCCCEEEEEC----CC--CC-----CCCHHHHHHHHHHCCCEE
T ss_conf 89999999844-27997599965----67--78-----852599999999883959
No 78
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.24 E-value=1.3e-05 Score=57.34 Aligned_cols=198 Identities=19% Similarity=0.266 Sum_probs=99.4
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC--CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 102446665425789999898723577506988224--678765310002456311233445766322303223334355
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD--VYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD--i~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
|.+++-.-|+||||+|.-|..+|+++|++|--+-+- ---|+.|... .+++ ..++.. +++.
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~a--tG~~------------srNLD~----~mm~ 64 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAA--TGRP------------SRNLDS----WMMG 64 (451)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH--HCCC------------CCCCCH----HHCC
T ss_conf 599548888858999999999998668721665568786381356676--3885------------677765----4469
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC------CCHHHHCCCC--CCEEEEECCCCCHHHHH--H
Q ss_conf 221000134202478999867521377758997455644421------0000000223--40267421443113456--6
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA------HLTIAQKIPL--SGVVIVSTPQDLALIDV--K 245 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~------~lsl~~~~~~--~~~iiVttP~~~s~~da--~ 245 (341)
+ ..+++++.... .+.|+.||---=|.=|= .-|.++.... .-+|+|....-.|-+.| .
T Consensus 65 ~------------~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv 131 (451)
T COG1797 65 E------------EGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIV 131 (451)
T ss_pred H------------HHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 9------------89999999862-7898799961230236887776777799999985999899995752257899999
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH-HCCCEEEECCCCHHHHHHHCCCCCEEEECCCCH
Q ss_conf 6777640012211445544202458778866512477658999998-479789882799899975028821799779998
Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEK-IGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSA 324 (341)
Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~-~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~ 324 (341)
+....|. -++++.|||.|.- .+++++ ...+...++ .++|++|.||.++++....+. --+|...-...
T Consensus 132 ~G~~~fd-p~v~iaGVIlNrV------gserH~----~llr~Ale~~~gv~vlG~lpr~~~l~lp~RH-LGLV~a~E~~~ 199 (451)
T COG1797 132 KGFKHFD-PDVNIAGVILNRV------GSERHY----ELLRDALEEYTGVPVLGYLPRDDDLELPSRH-LGLVPASERLE 199 (451)
T ss_pred HHHHHCC-CCCCEEEEEEECC------CCHHHH----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCCCHHHHH
T ss_conf 8898619-9882578997247------778899----9999875532798579874278556785413-26534303444
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780831|r 325 TSEIYQEISDRIQQ 338 (341)
Q Consensus 325 ~a~~~~~iA~~i~~ 338 (341)
....+..+|+-+.+
T Consensus 200 ~~~~~~~~a~~v~~ 213 (451)
T COG1797 200 LEAKLEALAEVVEK 213 (451)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999986
No 79
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=98.22 E-value=8e-06 Score=58.80 Aligned_cols=186 Identities=20% Similarity=0.342 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC------------CCCCCCCCCCCCC-----CCCEEECC
Q ss_conf 425789999898723577506988224678765310002456------------3112334457663-----22303223
Q gi|254780831|r 107 VGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK------------VEISDKKFLKPKE-----NYGIKIMS 169 (341)
Q Consensus 107 VGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~------------~~~~~~~~i~p~~-----~~gi~~~s 169 (341)
-|||++++-|---|+++||||+=+=+= ..|+--..-.+++ ..+..+..++|+- ..==+++=
T Consensus 10 AGKs~l~AaLCRiL~rrGy~VAPFKsQ--NMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgdf~SQviv 87 (502)
T TIGR00313 10 AGKSLLTAALCRILARRGYRVAPFKSQ--NMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGDFTSQVIV 87 (502)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 028999999999985278812785011--010133311378755137689998638788623487101678884667898
Q ss_pred CCCCCCCCCCCCCCCCC---HHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCC--------CHHHHCCCCCCEEEEEC
Q ss_conf 33435522100013420---24789998675213777589974556444---210--------00000022340267421
Q gi|254780831|r 170 MASLVDENVAMIWRGPM---VQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAH--------LTIAQKIPLSGVVIVST 235 (341)
Q Consensus 170 ~g~l~~~~~~~~~rg~~---~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~--------lsl~~~~~~~~~iiVtt 235 (341)
+|.=+..=++--.+.-. .-+++++=|. ..-.+|||||+- |.| ++. +.++.++. +.+|+|.=
T Consensus 88 ~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle-~L~~~Yd~vv~E---GAGS~AEINL~~rDLaN~~iA~~~~-A~~iLvAD 162 (502)
T TIGR00313 88 HGRAVGDMNAQEYYKNKVDFLLKAIKESLE-ILAEEYDLVVIE---GAGSPAEINLKERDLANMRIAELAD-ADVILVAD 162 (502)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEE---CCCCCCCCCCCCCCCHHHHHHHHCC-CCEEEEEE
T ss_conf 411246676156777999999999999998-752028889982---6887100053315722478986439-76799975
Q ss_pred CCCC-HHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 4431-134566677764001-22114455442024587788665124776589999984797898827998999
Q gi|254780831|r 236 PQDL-ALIDVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341)
Q Consensus 236 P~~~-s~~da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341)
=+-= -+....=++.|+..- ..-|-|+|+|. | -|+..=+ +.|.+++.|--|+|+||.||||+.+.
T Consensus 163 IDRGGVFAsi~GTl~LL~~~~r~liKG~vINk--f----RG~~~vL--~~GI~~lEelTGiPVLGv~PY~~~l~ 228 (502)
T TIGR00313 163 IDRGGVFASIYGTLKLLPEEERKLIKGIVINK--F----RGNVDVL--ESGIEKLEELTGIPVLGVLPYDENLK 228 (502)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECEEEECC--C----CCCHHHH--HHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 07774324337466618834575003068835--4----6872443--44568998854842344650125776
No 80
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.21 E-value=1.2e-05 Score=57.62 Aligned_cols=237 Identities=20% Similarity=0.290 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECC----CEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 202899999872033847976436358----7655698899899999966878478999999999998606763423550
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQ----RLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVT 78 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lG----lI~~I~I~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~ 78 (341)
.++|+.|.++++.|.---+..|+ ++. ++++|.- ..+ .-+. ..+-...+++..-+.+.|-++=|-++..+.
T Consensus 21 ~i~E~~i~e~~reir~ALLeADV-nl~vVk~fi~~ike--ra~--g~ev-~~~l~p~q~~iKiV~eELv~llG~~~~~l~ 94 (451)
T COG0541 21 RITEKDVKEALREIRRALLEADV-NLKVVKDFIKRIKE--RAL--GEEV-PKGLTPGQQFIKIVYEELVKLLGGENSELN 94 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--HHC--CCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 67799999999999999996444-68999999999999--861--4667-888998999999999999998488876650
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCEECCCCCCCCCCCCCC
Q ss_conf 3222343332223465420102446665425789999898723577506988224678765-310002456311233445
Q gi|254780831|r 79 LTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI-PKLLKISGKVEISDKKFL 157 (341)
Q Consensus 79 lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~-~~~lg~~~~~~~~~~~~i 157 (341)
+. ..+| .+|... |==|-||||++.-||..|.+.|+||+++-||+|.|.. ..+--+..+
T Consensus 95 l~--~~~P---------~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q--------- 153 (451)
T COG0541 95 LA--KKPP---------TVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ--------- 153 (451)
T ss_pred CC--CCCC---------EEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH---------
T ss_conf 37--8998---------589998-15679748689999999997499458985056786899999999986---------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCCC-----HHHHCCCCCCEE
Q ss_conf 7663223032233343552210001342024789998675213777589974556444-2100-----000002234026
Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG-DAHL-----TIAQKIPLSGVV 231 (341)
Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g-d~~l-----sl~~~~~~~~~i 231 (341)
.|+.+.+. .....|+- .+.++++++-.. .+|++||||.--.. |..| .+-..+.-++.+
T Consensus 154 -----~~v~~f~~---~~~~~Pv~----Iak~al~~ak~~----~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~l 217 (451)
T COG0541 154 -----VGVPFFGS---GTEKDPVE----IAKAALEKAKEE----GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETL 217 (451)
T ss_pred -----CCCCEECC---CCCCCHHH----HHHHHHHHHHHC----CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf -----09853167---78899799----999999999974----998899968873303099999999998553987489
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCC-CHHHHHHHHHCCCE
Q ss_conf 742144311345666777640012211445544202458778866512477-65899999847978
Q gi|254780831|r 232 IVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGN-GGARFEAEKIGIPF 296 (341)
Q Consensus 232 iVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~-~~~~~~a~~~~i~~ 296 (341)
+|.- .+.=.||.....-|++ .+++-|+|.-+ -.|. .+ |++..+....+.|+
T Consensus 218 lVvD--am~GQdA~~~A~aF~e-~l~itGvIlTK------lDGd-----aRGGaALS~~~~tg~PI 269 (451)
T COG0541 218 LVVD--AMIGQDAVNTAKAFNE-ALGITGVILTK------LDGD-----ARGGAALSARAITGKPI 269 (451)
T ss_pred EEEE--CCCCHHHHHHHHHHHH-HCCCCEEEEEC------CCCC-----CCCHHHHHHHHHHCCCE
T ss_conf 9876--4445678999999866-26986499971------4678-----76228885699878985
No 81
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.20 E-value=8.1e-06 Score=58.75 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=82.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
||+.. |-=||||||+.+-||..+.+.|+||+++-+|-|.+.-..-| .... +.-|+.+.... .+.
T Consensus 2 Vi~lv-GptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL-----~~~a--------~~l~v~~~~~~--~~~ 65 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQL-----RVLG--------EQVGVPVFEEG--EGK 65 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHHH--------HHCCCEEEECC--CCC
T ss_conf 99998-99999889999999999997699289997488757799999-----9999--------97498599227--755
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 210001342024789998675213777589974556444--2100-----000002234026742144311345666777
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGVVIVSTPQDLALIDVKRAIS 249 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~iiVttP~~~s~~da~r~~~ 249 (341)
+ +...+++.+......++|+++|||| |-+ |..+ .+......+..++|... +.-.++.....
T Consensus 66 ~---------~~~~~~~~~~~~~~~~~D~IlIDTa-Gr~~~d~~~~~el~~l~~~~~p~~~~LVl~a--~~~~~~~~~~~ 133 (173)
T cd03115 66 D---------PVSIAKRAIEHAREENFDVVIVDTA-GRLQIDENLMEELKKIKRVVKPDEVLLVVDA--MTGQDAVNQAK 133 (173)
T ss_pred C---------HHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCEEECCC--CCHHHHHHHHH
T ss_conf 8---------7999999999987568998999788-8787999999999999864489721574246--55065899999
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE
Q ss_conf 640012211445544202458778866512477658999998479789
Q gi|254780831|r 250 MYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL 297 (341)
Q Consensus 250 ~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l 297 (341)
-|.+ ..++-|+|.. ..++... -|..-.++.+.++|+.
T Consensus 134 ~f~~-~~~~~~~I~T-------KlDet~~---~G~~ls~~~~~~~Pi~ 170 (173)
T cd03115 134 AFNE-ALGITGVILT-------KLDGDAR---GGAALSIRAVTGKPIK 170 (173)
T ss_pred HHHH-CCCCCEEEEE-------EECCCCC---CCHHHHHHHHHCCCEE
T ss_conf 9874-2799789997-------1438997---5799999999890908
No 82
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.18 E-value=8.6e-06 Score=58.58 Aligned_cols=49 Identities=31% Similarity=0.465 Sum_probs=41.3
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC
Q ss_conf 0102446665425789999898723577506988224678765310002456
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK 148 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~ 148 (341)
+-|++--.-|.||||+|+-|+-+|++.|+|+.+. ++-||+.-.||+.+-
T Consensus 59 VTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiKGG 107 (556)
T PRK13505 59 VTAINPTPAGEGKTTVTVGLGDALNKIGKKTVIA---LREPSLGPVFGIKGG 107 (556)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCCC
T ss_conf 9845888888886301798999998718743799---735887873166556
No 83
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=98.14 E-value=8.4e-06 Score=58.67 Aligned_cols=49 Identities=29% Similarity=0.450 Sum_probs=40.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC
Q ss_conf 0102446665425789999898723577506988224678765310002456
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK 148 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~ 148 (341)
+-|++--.-|.||||+|+-|+-+|++.|+++.+- ++-||+.-.||+.+-
T Consensus 59 VTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~---lRePSlGPvFGiKGG 107 (555)
T pfam01268 59 VTAITPTPAGEGKTTTTIGLGQALNRLGKKAIAA---LREPSLGPVFGIKGG 107 (555)
T ss_pred EEECCCCCCCCCCCEEHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCCC
T ss_conf 9845788888886302365999998628743689---725877874465666
No 84
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=98.12 E-value=2.1e-05 Score=56.01 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=40.6
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 010244666542578999989872357750698822467876531000245
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~ 147 (341)
+-|++--.-|.||||+|+-|+-+|.+.|+|+.+. ++-||+.-.||+.+
T Consensus 68 VTaitPTP~GEGKTTttIGL~~aL~~lgkk~~~~---lRePSlGPvFGiKG 115 (587)
T PRK13507 68 VTAITPTPLGEGKSTTTMGLVQGLGKRGKKVGGA---IRQPSGGPTMNIKG 115 (587)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCC
T ss_conf 9846888888986210562999998608825899---72688788647655
No 85
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.11 E-value=5.7e-06 Score=59.75 Aligned_cols=171 Identities=21% Similarity=0.329 Sum_probs=86.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
+||+.. |--||||||+.+-||..+.++|+||+++-+|-|.+..-.-| ... .+.-|+.+.... .
T Consensus 2 ~vi~lv-GptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL-----~~y--------a~~l~v~~~~~~---~ 64 (196)
T pfam00448 2 NVILLV-GLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQL-----KQL--------AERLGVPVFGSG---T 64 (196)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHH--------HHHCCCEEEECC---C
T ss_conf 699998-99999889999999999997799289997587768899999-----999--------986398178148---7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 2210001342024789998675213777589974556444--2100-----00000223402674214431134566677
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
.+.+ ...+++.+......++|+++|||| |-+ |..+ .+....+.+..++|.... +...+.....
T Consensus 65 ~~d~--------~~~~~~~l~~~~~~~~D~IlIDTa-Gr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~-~~~~~~~~~~ 134 (196)
T pfam00448 65 GSDP--------AAVAFDAVEKAKAENYDVVLVDTA-GRLQNDKNLMDELKKIKRVIAPDEVLLVLDAT-TGQNALNQAK 134 (196)
T ss_pred CCCH--------HHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHH
T ss_conf 7787--------899999999988468999999899-98747677899999998522873028998567-7821378999
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf 7640012211445544202458778866512477658999998479789882799899
Q gi|254780831|r 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341)
Q Consensus 249 ~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341)
..++.++ +-|+|.. ..++... -|..-.++...++|+. .+-..++|
T Consensus 135 ~f~~~~~--~~~~I~T-------KlDet~~---~G~~l~~~~~~~~Pi~-~~t~Gq~v 179 (196)
T pfam00448 135 AFNEAVG--ITGVILT-------KLDGDAK---GGAALSIAAETGKPIK-FIGVGEKI 179 (196)
T ss_pred HHHHHCC--CCCEEEE-------EECCCCC---CCHHHHHHHHHCCCEE-EEECCCCH
T ss_conf 8760047--7626888-------4057887---5299989999896979-99679981
No 86
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.11 E-value=7.5e-05 Score=52.31 Aligned_cols=43 Identities=30% Similarity=0.521 Sum_probs=38.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
.||... |=-|+||||+++-||..|.+.|+||+|+-||+|.|..
T Consensus 98 ~Vim~v-GlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA 140 (433)
T PRK00771 98 QTILLV-GLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGA 140 (433)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 589997-3788978999999999999779946785067883689
No 87
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.08 E-value=5.6e-05 Score=53.18 Aligned_cols=132 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCEECCCCCCCCCCCCCCCCCC-CCCEEECC
Q ss_conf 4654201024466654257899998987235775069882246787-653100024563112334457663-22303223
Q gi|254780831|r 92 LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIPKLLKISGKVEISDKKFLKPKE-NYGIKIMS 169 (341)
Q Consensus 92 ~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s 169 (341)
.+-..+|-|+ |-+|+||||+.--|..-|.+.|+||+++--|...| +-.-+||=. . ++.-.. ..|+.+-|
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR--i------RM~~~~~~~~vFiRs 118 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR--I------RMQRLAVDPGVFIRS 118 (323)
T ss_pred CCCCCEEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCH--H------HHHHHCCCCCEEEEE
T ss_conf 7998378731-799886688999999999977967899998899998785301207--6------677644699817842
Q ss_pred CCCCCCCCCCCCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 3343552210001342--024789998675213777589974556444--210000000223402674214431134566
Q gi|254780831|r 170 MASLVDENVAMIWRGP--MVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLALIDVK 245 (341)
Q Consensus 170 ~g~l~~~~~~~~~rg~--~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~~da~ 245 (341)
+.. ||. -++++..+.+.-+.-..||++||-|- |.| |+. +... .|-.++|++|.--.-..+.
T Consensus 119 ~~s----------rG~lGGlS~at~~~i~~ldAaG~DvIIVETV-GvGQsev~--I~~~--aDt~~~v~~pg~GD~~Q~i 183 (323)
T COG1703 119 SPS----------RGTLGGLSRATREAIKLLDAAGYDVIIVETV-GVGQSEVD--IANM--ADTFLVVMIPGAGDDLQGI 183 (323)
T ss_pred CCC----------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCHHH--HHHH--CCEEEEEECCCCCCHHHHH
T ss_conf 687----------7651016688999999998618988999814-78841557--7652--1668999657888278888
Q ss_pred HH
Q ss_conf 67
Q gi|254780831|r 246 RA 247 (341)
Q Consensus 246 r~ 247 (341)
|.
T Consensus 184 K~ 185 (323)
T COG1703 184 KA 185 (323)
T ss_pred HH
T ss_conf 74
No 88
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=98.08 E-value=2.7e-05 Score=55.26 Aligned_cols=73 Identities=26% Similarity=0.302 Sum_probs=47.8
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 63423550322234333222346542010244666542578999989872357750698822467876531000245
Q gi|254780831|r 71 TVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147 (341)
Q Consensus 71 gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~ 147 (341)
|-...+|.+..-+...++.. -..=-+-|++.-.-|.||||+|+-|+-+|.+.|+|+.+. ++-||+.-.||+.+
T Consensus 18 G~~kAKi~~~~~~~~~~~~~-gklilVTaitPTP~GEGKTTttIGL~~aL~~~gk~~~~~---lRePSlGP~FGiKG 90 (524)
T cd00477 18 GKYKAKVDLDVLKRLEKRPD-GKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKG 90 (524)
T ss_pred CCCCEEECHHHHHHHCCCCC-CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCC
T ss_conf 77306743889875234899-559999846888888885310998999998736631488---61588787305546
No 89
>PRK10867 signal recognition particle protein; Provisional
Probab=98.07 E-value=0.00012 Score=50.99 Aligned_cols=117 Identities=20% Similarity=0.294 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCE----EECCCEEEEEE--ECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 20289999987203384797643----63587655698--8998999999668784789999999999986067634235
Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNI----VEMQRLSEIFI--VHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAV 76 (341)
Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dI----v~lGlI~~I~I--~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~ 76 (341)
.++++.|.+.|+.|.---+..|+ +. .++.+|.- .+.++ ..+....+.+..-+.+.|-++=|-....
T Consensus 21 ~lte~~i~~~lrEIr~ALLeADV~~~vvk-~~i~~vke~~~g~~v-------~~~l~p~q~i~kiv~~eL~~lLg~~~~~ 92 (453)
T PRK10867 21 RLTEDNVKETLREVRMALLEADVALPVVR-EFINRVKEKAVGHEV-------NKSLTPGQEFVKIVRNELVAAMGEENQT 92 (453)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 77899999999999999997568879999-999999999633513-------5789889999999999999985888766
Q ss_pred EECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCC
Q ss_conf 503222343332223465420102446665425789999898723-577506988224678765
Q gi|254780831|r 77 VTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADVYGPSI 139 (341)
Q Consensus 77 V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi~~ps~ 139 (341)
..+. .. -..+|... |==|+||||+++-||..|. +.|++|+|+-||.|.|..
T Consensus 93 l~~~--~~---------~p~VIm~v-GLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA 144 (453)
T PRK10867 93 LNLA--AQ---------PPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 144 (453)
T ss_pred CCCC--CC---------CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 6337--89---------99699997-46888518589999999997389837985588770589
No 90
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.06 E-value=1.7e-05 Score=56.54 Aligned_cols=193 Identities=18% Similarity=0.229 Sum_probs=98.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCEE-C-CCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 2010244666542578999989872357750698822467876-53100-0-2456311233445766322303223334
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS-IPKLL-K-ISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps-~~~~l-g-~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341)
|=|.|++...|.||||+|.-|..+|+++|++|.-+-+ ||. |+-++ . +.+++ .+++.. +
T Consensus 2 kgilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~---GPDYIDP~~h~~a~G~~------------~~NLD~----~ 62 (432)
T PRK13896 2 DGVVLAGTSSGVGKTVATLAVLQALADAGYDVQPAKA---GPDFIDPSHHEAVVDTP------------SRSLDP----W 62 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHCCC------------CCCCCH----H
T ss_conf 6289977899998999999999999978496376666---84751989999996898------------446891----0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCHHHHCCCC--CCEEEEECCCCCHHHHH--HHH
Q ss_conf 355221000134202478999867521377758997455644421-0000000223--40267421443113456--667
Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA-HLTIAQKIPL--SGVVIVSTPQDLALIDV--KRA 247 (341)
Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~-~lsl~~~~~~--~~~iiVttP~~~s~~da--~r~ 247 (341)
+..++ .+++.+.. ++-|+-||.--=|.=|= .-|-++.... .-+|+|....-.+.+-+ .+.
T Consensus 63 m~~~~------------~v~~~~~~---~~aDiaviEGvMGLyDG~~~Sta~lA~~l~~PVvLVvd~~~~~~s~aA~v~G 127 (432)
T PRK13896 63 LSGED------------GMRRTYWR---GTGDVCVVEGMMGLYDGTVASTAAVAEELDLPVVLVVDAKAGMESVAATALG 127 (432)
T ss_pred HCCHH------------HHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 18989------------99999972---7998699961232457887758999998499989999332018889999999
Q ss_pred HHHHHCC---CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCC-CCCEEEECCCC
Q ss_conf 7764001---2211445544202458778866512477658999998479789882799899975028-82179977999
Q gi|254780831|r 248 ISMYQKM---NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDL-GIPIVVHNMNS 323 (341)
Q Consensus 248 ~~~~~~~---~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~-g~P~v~~~p~s 323 (341)
..-|..- +++|.|||.|. + .+++++ ...++..++ ++|+||.||.++.+....+. |- +...-..
T Consensus 128 ~~~f~~~~~~d~~iaGVIlN~----v--~s~rh~----~~l~~al~~-~i~vlG~lPr~~~l~lp~RHLGL--~~~~E~~ 194 (432)
T PRK13896 128 FQAYADRAGVDIDVAGVLAQR----A--HGGRHA----DGIRDALPD-ELTYFGRVPPRSDLEIPDRHLGL--HMGSEAP 194 (432)
T ss_pred HHHHCCCCCCCCEEEEEEECC----C--CCHHHH----HHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCC--CCCCCCC
T ss_conf 997241247652476688426----7--758899----999999870-89489884247778984102598--7333442
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254780831|r 324 ATSEIYQEISDR 335 (341)
Q Consensus 324 ~~a~~~~~iA~~ 335 (341)
...+.+..+++.
T Consensus 195 ~~~~~~~~~~~~ 206 (432)
T PRK13896 195 IDDDALDAAAAH 206 (432)
T ss_pred HHHHHHHHHHHH
T ss_conf 389999999864
No 91
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=4.6e-05 Score=53.74 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=89.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCEEECCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445--7663223032233343
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL--KPKENYGIKIMSMASL 173 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i--~p~~~~gi~~~s~g~l 173 (341)
..||.. |--||||||+-+-||.-+...+++|+||-+|-|.-.. -.+...- ..| .|+. +.
T Consensus 242 q~IALV-GPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGA------VEQLKTY--AeIMgVPV~-----VV----- 302 (436)
T PRK11889 242 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT------VQQLQDY--VKTIGFEVI-----AV----- 302 (436)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH------HHHHHHH--HHHHCCCEE-----EE-----
T ss_conf 179998-9999888999999999986169808999806634769------9999999--998499439-----96-----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 552210001342024789998675213777589974556444--21-00----000002234026742144311345666
Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLSGVVIVSTPQDLALIDVKR 246 (341)
Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~~~iiVttP~~~s~~da~r 246 (341)
.+++ -+..++.++ ++. .++|+++|||. |-+ |. ++ .+......+...+|.. -.+.-.|...
T Consensus 303 ~dp~--------eL~~AL~~l-kdk--a~~DLILIDTA-GRS~RD~~~I~EL~~~l~~~~p~ev~LVLS-ATTK~~DL~e 369 (436)
T PRK11889 303 RDEA--------AMTRALTYF-KEE--ARVDYILIDTA-GKNYRASETVEEMIETMGQVEPDYICLTLS-ASMKSKDMIE 369 (436)
T ss_pred CCHH--------HHHHHHHHH-HHC--CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHHHHH
T ss_conf 8889--------999999987-633--68888999298-988468999999999985127771699997-8899899999
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHHH
Q ss_conf 77764001221144554420245877886651247765899999847978988-----279989997
Q gi|254780831|r 247 AISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVRV 308 (341)
Q Consensus 247 ~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~~ 308 (341)
.++-|+.+++ -|+|.- ..++.. .-|..-.+..+.++|+... +|.|..+..
T Consensus 370 Ii~rF~~l~i--dglIfT-------KLDET~---SlG~ILNv~~~s~LPIsYvTdGQ~VPEDIevA~ 424 (436)
T PRK11889 370 IITNFKDIHI--DGIVFT-------KFDETA---SSGELLKIPAVSSAPIVLMTDGQDVKKNIHIAT 424 (436)
T ss_pred HHHHHCCCCC--CEEEEE-------ECCCCC---CCHHHHHHHHHHCCCEEEECCCCCCCCCHHHCC
T ss_conf 9997257998--828997-------132568---703788899883998799789985875300069
No 92
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.03 E-value=4.3e-05 Score=53.95 Aligned_cols=168 Identities=23% Similarity=0.364 Sum_probs=85.8
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC-CC-EEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 542010244666542578999989872357-75-0698822467876531000245631123344576632230322333
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK-GK-NVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA 171 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~-~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g 171 (341)
-.++|+.. |-=||||||+.+-||..++.. |+ +|+||-+|-|--.. ++ +... -..|. |+.+-
T Consensus 209 ~~~vvalV-GPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA-----~e-QLk~--Ya~il-----gvp~~--- 271 (412)
T PRK05703 209 QGGVVALV-GPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGA-----VE-QLKT--YAKIM-----GIPVK--- 271 (412)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----HH-HHHH--HHHHC-----CCEEE---
T ss_conf 67369998-888875676999999999997299817999837677779-----99-9999--99971-----97379---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-C---C-HHHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 43552210001342024789998675213777589974556444--21-0---0-0000022340267421443113456
Q gi|254780831|r 172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-H---L-TIAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~---l-sl~~~~~~~~~iiVttP~~~s~~da 244 (341)
.+.. +- -+..++++ . .+.|+++|||+ |-+ |. + | .+....+.....+|... .+.-.|.
T Consensus 272 -v~~~--~~-----~l~~al~~----~--~~~dlILIDTa-G~s~~d~~~~~eL~~~~~~~~~~~~~LVlsa-t~~~~dl 335 (412)
T PRK05703 272 -VAYD--PK-----ELAKALEQ----L--ANCDLILIDTA-GRSQRDPRLISELKALIENSKPIDVYLVLSA-TTKYRDL 335 (412)
T ss_pred -EECC--HH-----HHHHHHHH----H--CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHH
T ss_conf -8479--99-----99999987----1--58997999689-8897899999999999862488718999759-8998999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHH
Q ss_conf 6677764001221144554420245877886651247765899999847978988-----2799899
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDV 306 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i 306 (341)
...++-|+.+++. ++|. +..++... -|..-.++-+.++|+... +|.|...
T Consensus 336 ~~i~~~f~~~~~~--~lI~-------TKlDEt~~---~G~il~~~~~~~lplsy~t~GQ~VPeDi~~ 390 (412)
T PRK05703 336 KDIVKHFSRLPLD--GLIL-------TKLDETSS---LGSILSLLIESGLPISYLTDGQRVPDDIKV 390 (412)
T ss_pred HHHHHHHCCCCCC--EEEE-------EEECCCCC---CCHHHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf 9999984679998--7999-------71128998---629999999988796999469997243422
No 93
>PRK00784 cobyric acid synthase; Provisional
Probab=98.02 E-value=4.1e-05 Score=54.10 Aligned_cols=191 Identities=19% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEE---CCC----CC-----CCCCCCCCCC----
Q ss_conf 4201024466654257899998987235775069882246787653100---024----56-----3112334457----
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLL---KIS----GK-----VEISDKKFLK---- 158 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~l---g~~----~~-----~~~~~~~~i~---- 158 (341)
.|-|.|..---+||||++++-|...|+++|+||+=+-+- ..|..-.. |-+ .. ........++
T Consensus 3 ~k~lMv~GT~S~vGKS~l~aaLCRi~~~~G~~VaPFKaQ--NMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILL 80 (492)
T PRK00784 3 AKALMVQGTTSDAGKSTLVAGLCRILARRGLRVAPFKAQ--NMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLL 80 (492)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 630588867888779999999999999589855785702--246651788999833699999999869999767688776
Q ss_pred -CCCCCCEEECCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCC-------
Q ss_conf -663223032233343552--------210001342024789998675213777589974556444---2100-------
Q gi|254780831|r 159 -PKENYGIKIMSMASLVDE--------NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAHL------- 219 (341)
Q Consensus 159 -p~~~~gi~~~s~g~l~~~--------~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~l------- 219 (341)
|....+-+++=.|--... .....|. .+..++.. ...++|++|+. |.| ++.|
T Consensus 81 KP~gd~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~--~v~~a~~~-----L~~~~d~iV~E---GAGSpaEiNL~~~Di~N 150 (492)
T PRK00784 81 KPQSDTGSQVIVQGKVVGNMDARDYHDYKPRLLE--AVLESLDR-----LAAEYDLVVVE---GAGSPAEINLRDRDIAN 150 (492)
T ss_pred CCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHH--HHHHHHHH-----HHHHCCEEEEE---CCCCCCCCCCCHHHHHH
T ss_conf 3189988679999978753139999986999999--99999999-----88658899993---58982002652200242
Q ss_pred -HHHHCCCCCCEEEEECCCCC-HHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCE
Q ss_conf -00000223402674214431-134566677764001-221144554420245877886651247765899999847978
Q gi|254780831|r 220 -TIAQKIPLSGVVIVSTPQDL-ALIDVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPF 296 (341)
Q Consensus 220 -sl~~~~~~~~~iiVttP~~~-s~~da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~ 296 (341)
.++..+. +-+|+|.-=+.- .+....-+..++.+- ...+.|+|+|. |+ |.. .+| +.+.+.+.+..++|+
T Consensus 151 m~~A~~~~-apviLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNK--FR----GD~-~ll-~pG~~~le~~tg~Pv 221 (492)
T PRK00784 151 MGFAEAAD-APVILVADIDRGGVFASLVGTLALLSPEERARVKGFVINK--FR----GDI-SLL-EPGLDWLEELTGIPV 221 (492)
T ss_pred HHHHHHCC-CCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEE--EC----CCH-HHH-CCHHHHHHHHHCCCC
T ss_conf 89998659-9889999756764268776388759998871158999976--45----874-663-559999999868980
Q ss_pred EEECCCCHHH
Q ss_conf 9882799899
Q gi|254780831|r 297 LESVPFDMDV 306 (341)
Q Consensus 297 lg~IP~d~~i 306 (341)
||.||+.+.+
T Consensus 222 lGviP~~~~l 231 (492)
T PRK00784 222 LGVLPYLDDL 231 (492)
T ss_pred EEEECCCCCC
T ss_conf 6861465679
No 94
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.01 E-value=1.5e-05 Score=56.91 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=100.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-------------CCCCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123-------------344576632
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-------------KKFLKPKEN 162 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-------------~~~i~p~~~ 162 (341)
+.+-|+.--=|||||.+|..|+.+|.++|++|+..--= --|.+......| ...+.|..
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPV--------qsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~- 73 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPV--------QTGSEETAENSDALVLQRLSGLDLSYELINPYR- 73 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCE--------EECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEE-
T ss_conf 36999827999649999999999999689705987752--------217877899745999998519986633543353-
Q ss_pred CCEE-ECCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCHHHHCCC--CCCEEEE
Q ss_conf 2303-223334355--2210001342024789998675213777589974556444----21000000022--3402674
Q gi|254780831|r 163 YGIK-IMSMASLVD--ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG----DAHLTIAQKIP--LSGVVIV 233 (341)
Q Consensus 163 ~gi~-~~s~g~l~~--~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g----d~~lsl~~~~~--~~~~iiV 233 (341)
++ -.|- .+.. ++..+ -. ..+...+++ .+..+|+++|--.=|.. |. .++...+. ..-+|+|
T Consensus 74 --f~~P~sP-hlAa~~eg~~I-~~-~~l~~~l~~-----l~~~~d~vlVEGAGGl~vPl~~~-~~~~D~~~~~~lpvILV 142 (223)
T COG0132 74 --FKEPLSP-HLAAELEGRTI-DL-EKLSQGLRQ-----LLKKYDLVLVEGAGGLLVPLTEE-YTFADLAVQLQLPVILV 142 (223)
T ss_pred --CCCCCCC-HHHHHHCCCCC-CH-HHHHHHHHH-----HHCCCCEEEEECCCCEEEECCCC-CCHHHHHHHCCCCEEEE
T ss_conf --0788884-77787648935-69-999878885-----40546789996787333325786-52999999809999999
Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHH-HHHHHHCCCEEEECCCCHHH
Q ss_conf 21443113456667776400122114455442024587788665124776589-99998479789882799899
Q gi|254780831|r 234 STPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGAR-FEAEKIGIPFLESVPFDMDV 306 (341)
Q Consensus 234 ttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~-~~a~~~~i~~lg~IP~d~~i 306 (341)
+...--++.++.-+.+..++.+++++|+|.|-. .+...+... .. .+.+..+.|++|.+|+-++.
T Consensus 143 ~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~---~~~~~~~~~------~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 143 VGIKLGTINHTLLTVEALRARGLPLAGWVANGI---NPELDHYAE------INATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC---CCCHHHHHH------HHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 667757787999999999977998789997267---885557888------89999974289743405577663
No 95
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=7.4e-05 Score=52.34 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=85.9
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 420102446665425789999898723----5775069882246787653100024563112334457663223032233
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK----NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSM 170 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala----~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~ 170 (341)
++||+.. |--||||||+.+-||.-++ ++|++|+|+-+|.|.+....=| .... + +. |+.+..
T Consensus 174 ~~vi~lV-GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya-~--il-----~vp~~v- 238 (388)
T PRK12723 174 KRIFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYG-D--IM-----GIPVKA- 238 (388)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHH-H--HH-----CCCEEE-
T ss_conf 6289998-998875787999999999986267677379998078758899999-----9999-9--97-----880698-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCC-CEEEEECCCCCHHH
Q ss_conf 343552210001342024789998675213777589974556444--21-00----000002234-02674214431134
Q gi|254780831|r 171 ASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLS-GVVIVSTPQDLALI 242 (341)
Q Consensus 171 g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~-~~iiVttP~~~s~~ 242 (341)
+.... -+..++.+ +.++|+++|||+ |-+ |. ++ .+...++.+ ...+|... -+.-.
T Consensus 239 ---~~~~~-------dl~~~l~~------~~~~D~IlIDTA-Grs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa-t~~~~ 300 (388)
T PRK12723 239 ---IESFK-------DLKEEITQ------SKDFDLVLIDTI-GKSPKDFMKLAEMKELLNACGRDAEFHLAVSS-TTKTS 300 (388)
T ss_pred ---ECCHH-------HHHHHHHH------HCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCHH
T ss_conf ---57889-------99999997------249999999589-98856899999999999741898459999879-89999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHH
Q ss_conf 5666777640012211445544202458778866512477658999998479789----88-2799899
Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDV 306 (341)
Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i 306 (341)
|.....+-|+.+++ -|+|.- ..++... -|..-.+..+.+.|+. |+ +|.|..+
T Consensus 301 d~~~i~~~f~~~~~--~~~I~T-------KlDEt~~---~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~ 357 (388)
T PRK12723 301 DIKEIFHQFSPFSY--KTVIFT-------KLDETTC---VGNLISLIHEMRKEVSYVTDGQIVPHNISI 357 (388)
T ss_pred HHHHHHHHHCCCCC--CEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 99999998427999--849998-------3227898---669999999988886999389968302033
No 96
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=97.99 E-value=1.5e-05 Score=56.98 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCC-CEECCCCCCCCCCCCCCCCCC----CC--CEEECCCCCCCC
Q ss_conf 6654257899998987235775069882246787-653-100024563112334457663----22--303223334355
Q gi|254780831|r 104 KGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIP-KLLKISGKVEISDKKFLKPKE----NY--GIKIMSMASLVD 175 (341)
Q Consensus 104 KGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~-~~lg~~~~~~~~~~~~i~p~~----~~--gi~~~s~g~l~~ 175 (341)
==|||||-+|.+||..|.++|++|+..=.=--|- +.+ .++. + |-..+.-.. .+ .+.+.++.|-.|
T Consensus 6 DT~VGKT~~ss~La~~lk~~G~~~g~~Kpv~tG~~~~~~dL~~-~------D~~~L~~~~~~~~~~~~Pi~~~P~~F~~P 78 (187)
T TIGR00347 6 DTGVGKTVVSSALAKKLKKAGYSVGYYKPVQTGIEETAEDLRN-E------DTELLQNISGTALDLDGPIEVNPYAFALP 78 (187)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHH-H------HHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 4586178998999999997598525112000157667763105-6------79999876544321389844266320568
Q ss_pred --CCCCCCCCC-CCHHHHHHHHHH---HHCCCCCCEEEEECCCCCC---C-CCCHHH---HCC-----CCCCEEEEECCC
Q ss_conf --221000134-202478999867---5213777589974556444---2-100000---002-----234026742144
Q gi|254780831|r 176 --ENVAMIWRG-PMVQSAIMHMLH---NVVWGQLDFLLIDMPPGTG---D-AHLTIA---QKI-----PLSGVVIVSTPQ 237 (341)
Q Consensus 176 --~~~~~~~rg-~~~~~~l~~~l~---~~~w~~~D~liiD~ppG~g---d-~~lsl~---~~~-----~~~~~iiVttP~ 237 (341)
+..+.---| +.-.+.+.+-+. +..|..+|||||--.=|.. - ..++++ +.. +-=.+|||+.|+
T Consensus 79 lsP~~A~~~Eg~~i~~~~~~~~~~naye~l~~~~d~~lVEGAGG~~vP~~r~~~t~~D~i~~~ietsGh~L~~ilV~r~~ 158 (187)
T TIGR00347 79 LSPHIAAKQEGRPIDLEELSKHLRNAYEELEEKYDFVLVEGAGGLCVPITREEYTVADLIKLLIETSGHQLPVILVVRVK 158 (187)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 86258886177832688898788789999997179179983362426666124579999999985058820279874686
Q ss_pred CCHHHHHHHHHHHHHCCCCC--HHHHHHH
Q ss_conf 31134566677764001221--1445544
Q gi|254780831|r 238 DLALIDVKRAISMYQKMNIP--IIGMIEN 264 (341)
Q Consensus 238 ~~s~~da~r~~~~~~~~~~~--i~GiV~N 264 (341)
-=++..+.-+.+.+++.+++ ++|+|.|
T Consensus 159 LGtiNHt~Lt~~~~~~~Gl~shl~G~i~N 187 (187)
T TIGR00347 159 LGTINHTLLTVEAARQTGLKSHLAGVILN 187 (187)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 46067999999999977994443545619
No 97
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.96 E-value=7.9e-05 Score=52.15 Aligned_cols=130 Identities=26% Similarity=0.367 Sum_probs=72.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCC
Q ss_conf 010244666542578999989872357750698822467876-5310002456311233445766-32230322333435
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS-IPKLLKISGKVEISDKKFLKPK-ENYGIKIMSMASLV 174 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps-~~~~lg~~~~~~~~~~~~i~p~-~~~gi~~~s~g~l~ 174 (341)
||-|+ |-.|+||||+.-.|...|.++|+||+++=-|...|- -.-+|| |+-++... ...++.+-|+..
T Consensus 1 viGit-G~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLG--------DRiRm~~~~~~~~vfiRs~at-- 69 (148)
T cd03114 1 VIGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILG--------DRIRMERHASDPGVFIRSLAT-- 69 (148)
T ss_pred CEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHH--------HHHHHHHHCCCCCEEEEECCC--
T ss_conf 97625-8997878999999999999789837999968887866862032--------354534415799836863466--
Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 52210001342--024789998675213777589974556444210000000223402674214431134566677
Q gi|254780831|r 175 DENVAMIWRGP--MVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 175 ~~~~~~~~rg~--~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
||. -++.+..+.+.-.....||+++|.|- |.|-....+.. -.|-.++|.+|..-.-..+.|..
T Consensus 70 --------rg~~ggla~~~~~~i~~l~~~g~D~IiIETv-GvGQse~~i~~--~aD~~i~v~~p~~GD~iQ~~K~g 134 (148)
T cd03114 70 --------RGFLGGLSRATPEVIRVLDAAGFDVIIVETV-GVGQSEVDIAS--MADTTVVVMAPGAGDDIQAIKAG 134 (148)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHHH--HCCEEEEEECCCCCCHHHHCCCC
T ss_conf --------6654204688999999999759998999748-77756026554--35669999636887377611228
No 98
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=9.8e-05 Score=51.54 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCC-CC-CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 4201024466654257899998987235-77-506988224678765310002456311233445766322303223334
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKN-KG-KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~-~G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341)
.+|+|.. |-=||||||+.+-||.-+.- .| +||+||-+|-|--. +++ +..+- ..|. |+.+-
T Consensus 176 ggV~alV-GPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIg-----AvE-QLktY--a~Il-----gvPv~---- 237 (404)
T PRK06995 176 GGVFALV-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG-----GHE-QLRIY--GKIL-----GVPVH---- 237 (404)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-----HHH-HHHHH--HHHC-----CCEEE----
T ss_conf 7558986-68887637589999999999838983799976875478-----999-99999--9875-----95599----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC----CHHHHCC-CCCCEEEEECCCCCHHHHHH
Q ss_conf 3552210001342024789998675213777589974556444--210----0000002-23402674214431134566
Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH----LTIAQKI-PLSGVVIVSTPQDLALIDVK 245 (341)
Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~----lsl~~~~-~~~~~iiVttP~~~s~~da~ 245 (341)
.+.... .+..++.++ .+.|+++|||+ |-+ |.. +...... +-....+|... .+.-.|..
T Consensus 238 vv~~~~-------eL~~aL~~l------~~~dlILIDTa-Grs~rD~~~~e~l~~l~~~~~~~~~~LVLsa-t~~~~dl~ 302 (404)
T PRK06995 238 AVKDAA-------DLRLALAEL------RNKHIVLIDTV-GMSQRDRMVSEQIAMLHGAGAPVQRLLLLNA-TSHGDTLN 302 (404)
T ss_pred EECCHH-------HHHHHHHHH------CCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHH
T ss_conf 959999-------999999970------89999998099-9897688899999999735788528999779-89999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHH
Q ss_conf 677764001221144554420245877886651247765899999847978988-----27998999
Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVR 307 (341)
Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~ 307 (341)
..++-|+.+++ -|+|. +..+|... -|..-.+.-+.+.|+... +|.|..+.
T Consensus 303 ~i~~~f~~~~~--~~~I~-------TKLDEt~~---~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A 357 (404)
T PRK06995 303 EVVQAYRGPGL--AGCIL-------TKLDEAAS---LGGALDTVIRHKLPLHYVSNGQRVPEDLHVA 357 (404)
T ss_pred HHHHHHCCCCC--CEEEE-------ECCCCCCC---HHHHHHHHHHHCCCEEEECCCCCCCCCHHCC
T ss_conf 99998446999--83998-------30406797---2399999999789859981899584212108
No 99
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=97.93 E-value=1e-05 Score=58.01 Aligned_cols=44 Identities=36% Similarity=0.465 Sum_probs=38.0
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 42010244666542578999989872357750698822467876
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
.+|=-|.-||||||||.+|.-||.++...+..+.-+|+|.-.++
T Consensus 2 a~IH~vlqgKGGVGKS~va~~LaQY~~~~~~~~~~iDTDpvN~t 45 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSMIAATIAQYKAGKGQKPLCIDTDPVNAT 45 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 75999855888630999999999999835999855608999705
No 100
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=97.91 E-value=0.00018 Score=49.86 Aligned_cols=132 Identities=24% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCEECCCCCCCCCCCCCCCC-CCCCCEEECCCCC
Q ss_conf 4201024466654257899998987235775069882246787-6531000245631123344576-6322303223334
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIPKLLKISGKVEISDKKFLKP-KENYGIKIMSMAS 172 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~~~lg~~~~~~~~~~~~i~p-~~~~gi~~~s~g~ 172 (341)
..+|.|+ |-.|+||||+.-.|+..+.+.|+||+++--|...| +-.-+||=.- ++.- ....++.+-|++.
T Consensus 29 a~~iGiT-G~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~--------RM~~~~~~~~vfiRs~~s 99 (267)
T pfam03308 29 AHRVGIT-GVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRT--------RMQRLAVDPGAFIRSSPS 99 (267)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHH--------HHHHHCCCCCEEEEECCC
T ss_conf 5599876-8998879999999999999689868999978999888863001077--------776505899858864577
Q ss_pred CCCCCCCCCCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 35522100013420--24789998675213777589974556444210000000223402674214431134566677
Q gi|254780831|r 173 LVDENVAMIWRGPM--VQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341)
Q Consensus 173 l~~~~~~~~~rg~~--~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341)
||.+ +++...+.+.-..-..||++||-|- |.|-.-..+...+ |-+++|..|.--.-..+.|..
T Consensus 100 ----------rg~lGGls~~t~~~i~lleaaGfD~IivETV-GVGQsE~~v~~~a--D~~llv~~Pg~GDeiQ~iKaG 164 (267)
T pfam03308 100 ----------RGALGGLSRATREAILLLDAAGFDVIIIETV-GVGQSEVDIANMA--DTFVLVTIPGGGDDLQGIKAG 164 (267)
T ss_pred ----------CCCCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHC--CEEEEEECCCCCHHHHHHHHH
T ss_conf ----------8888871476999999999779999999247-7775303555415--768999558876088898753
No 101
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=97.81 E-value=3.3e-05 Score=54.67 Aligned_cols=170 Identities=24% Similarity=0.364 Sum_probs=102.3
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 54201024466654257899998987235775069882246787653100024563112334457663223032233343
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASL 173 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l 173 (341)
..+||.+. |==||||||+=+=||..|.+.||+|+|-=+|-|.... -+..=...++-|+++++--.-
T Consensus 81 kp~Vil~V-GVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA-------------~EQL~~Wa~R~gv~vi~~~~g 146 (284)
T TIGR00064 81 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAA-------------IEQLEVWAKRLGVDVIKQKEG 146 (284)
T ss_pred CCEEEEEE-EEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH-------------HHHHHHHHHHHCCEEEECCCC
T ss_conf 97799998-4408860102889999998749908998275247999-------------999999898838755407889
Q ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----C--------HHHHC-CC---CCCEEEEECC
Q ss_conf -552210001342024789998675213777589974556444210----0--------00000-22---3402674214
Q gi|254780831|r 174 -VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH----L--------TIAQK-IP---LSGVVIVSTP 236 (341)
Q Consensus 174 -~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~----l--------sl~~~-~~---~~~~iiVttP 236 (341)
.+ ..++++ .++.+= --.++|+||+|| .|--| | -+.+. .+ .+..++|-
T Consensus 147 n~D-PAaV~f------DAi~~A----k~~niDvvliDT---AGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVl-- 210 (284)
T TIGR00064 147 NAD-PAAVIF------DAIQAA----KARNIDVVLIDT---AGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVL-- 210 (284)
T ss_pred CCC-CHHHHH------HHHHHH----HHCCCCEEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--
T ss_conf 887-178999------989999----874997899734---7545466203999999999873210257875575422--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCC-HHHHHHHHHCCCEE--EE-------CCCCHH
Q ss_conf 43113456667776400122114455442024587788665124776-58999998479789--88-------279989
Q gi|254780831|r 237 QDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNG-GARFEAEKIGIPFL--ES-------VPFDMD 305 (341)
Q Consensus 237 ~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~-~~~~~a~~~~i~~l--g~-------IP~d~~ 305 (341)
+-+.=.++..-.++|.+. +++=|+|.-. --|. .+| .+-.+++++++|+. |. .|||++
T Consensus 211 DAt~Gqna~~QA~~F~ea-v~ltGiiLTK------LDg~-----AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~Fd~~ 277 (284)
T TIGR00064 211 DATTGQNALEQAKVFNEA-VGLTGIILTK------LDGT-----AKGGIILAIAYELKLPVKFIGVGEKIDDLAPFDAD 277 (284)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCEEEEEC------CCCC-----CHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHH
T ss_conf 022203089999998654-0688589963------4688-----03789998899857976998548873320147978
No 102
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=97.79 E-value=0.00031 Score=48.21 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=40.7
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCEEC
Q ss_conf 654201024466654257899998987235775069882246787-6531000
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIPKLLK 144 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~~~lg 144 (341)
+-..+|.|+ |-.|+||||+.-.|+..|.+.|++|+++--|...| |-.-+||
T Consensus 47 g~a~~iGiT-G~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLG 98 (325)
T PRK09435 47 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG 98 (325)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 982599742-7999868899999999999679858999978999988861010
No 103
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00025 Score=48.78 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=85.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-C-CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 2010244666542578999989872357-7-5069882246787653100024563112334457663223032233343
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-G-KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASL 173 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l 173 (341)
-|+|.. |--||||||+.+-||.-++.. | ++|+||-.|-|--. -..+..+- ..|. |+.+- .
T Consensus 349 Gv~Alv-GpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRig------a~eQL~~y--~~il-----gvpv~----~ 410 (557)
T PRK12727 349 GVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG------GREQLHSY--GRQL-----GIAVH----E 410 (557)
T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH------HHHHHHHH--HHHH-----CCEEE----E
T ss_conf 647874-37776731179999999999739981899972664087------99999999--9983-----97579----8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC----CHHHHCC-CCCCEEEEECCCCCHHHHHHH
Q ss_conf 552210001342024789998675213777589974556444--210----0000002-234026742144311345666
Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH----LTIAQKI-PLSGVVIVSTPQDLALIDVKR 246 (341)
Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~----lsl~~~~-~~~~~iiVttP~~~s~~da~r 246 (341)
+.... -+..++.++ .+.|+|+|||. |.| |.. +...... .+...+++... +...+...
T Consensus 411 ~~~~~-------~l~~~l~~l------~~~~lvliDTa-G~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~--~~~~~l~~ 474 (557)
T PRK12727 411 ADSAE-------SLLDLLERL------RDYKLVLIDTA-GMGQRDRALAAQLNWLRAARQVTSLLVLPAN--AHFSDLDE 474 (557)
T ss_pred ECCHH-------HHHHHHHHH------CCCCEEEEECC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEECC--CCHHHHHH
T ss_conf 28999-------999999983------69998999499-9884699999999987514776359999688--99899999
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHH
Q ss_conf 77764001221144554420245877886651247765899999847978988-----27998999
Q gi|254780831|r 247 AISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVR 307 (341)
Q Consensus 247 ~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~ 307 (341)
.++-|+.. ++-|+|.- ..++... -|..-.+.-+.++|+... ||.|..+.
T Consensus 475 ~~~~~~~~--~~~~~i~T-------KlDE~~~---~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a 528 (557)
T PRK12727 475 VVRRFAHA--KPQGVVLT-------KLDETGR---FGSALSVVVDHQMPITWVTDGQRVPDDLHRA 528 (557)
T ss_pred HHHHHCCC--CCCEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEECCCCCCCCCHHHC
T ss_conf 99985379--98748996-------1436787---0399999999689828975898285236438
No 104
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.64 E-value=0.00035 Score=47.84 Aligned_cols=43 Identities=40% Similarity=0.450 Sum_probs=35.5
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 42010244666542578999989872357750698822467876
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
.-+++|. |-=.+||||+|+-||=-+-++|++|+++|||+.-+.
T Consensus 73 ~~~vmvv-G~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~e 115 (398)
T COG1341 73 VGVVMVV-GPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSE 115 (398)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 7389998-986767889999999887644741899968999766
No 105
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.60 E-value=6e-05 Score=52.97 Aligned_cols=209 Identities=13% Similarity=0.220 Sum_probs=110.0
Q ss_pred HHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-CCEE-EEEEEECCCCHHHHHHHHHHHHHHH-H-CCCCCCC-EEEECC
Q ss_conf 89999987203384797643635876556988-9989-9999966878478999999999998-6-0676342-355032
Q gi|254780831|r 6 KNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-HNTV-YLSITVPHTIAHQLQSLRSNAQQII-Q-NIPTVKN-AVVTLT 80 (341)
Q Consensus 6 ~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-~~~V-~i~l~lt~~~cp~~~~l~~~i~~~l-~-~i~gv~~-v~V~lt 80 (341)
++.|-+.|+.|---=|+.|+ +..||+...-+ ..++ .+.++--..+-..+..|++.+=..| . -.|+++. .--.++
T Consensus 25 e~vl~~~Lkei~~ALL~~dv-n~klv~~l~~Nik~kid~~n~e~~~~g~nKRk~iq~~vF~EL~~LvDp~~~APkPkkls 103 (453)
T TIGR01425 25 EEVLNEMLKEICTALLESDV-NVKLVRQLRENIKKKIDKINLEELASGLNKRKLIQKAVFEELCNLVDPGVEAPKPKKLS 103 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999999887511335-26778988887887405035133210324789999989999897608632346875333
Q ss_pred CCCCCCCC---CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 22343332---223465420102446665425789999898723577506988224678765310002456311233445
Q gi|254780831|r 81 ENKNPPQQ---RNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL 157 (341)
Q Consensus 81 ~~~~~~~~---~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i 157 (341)
.....-.. ....+-.+||... |==|-||||+.+-|||+..++|||++||=||-|.+.. -++..-+=.+.=
T Consensus 104 tstktinGkk~~p~Kgk~~ViMfV-GLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFRAGA------FdQLkqNA~kA~ 176 (453)
T TIGR01425 104 TSTKTINGKKFTPKKGKSSVIMFV-GLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGA------FDQLKQNATKAK 176 (453)
T ss_pred CCCEEECCCEEECCCCCCEEEEEE-ECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH------HHHHHHHHHHCC
T ss_conf 211010350341156882158886-2148871566878777763266432565177542324------899987476448
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-----CCHHHHCCCCCCE
Q ss_conf 7663223032233343552210001342024789998675213777589974556444--21-----0000000223402
Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-----HLTIAQKIPLSGV 230 (341)
Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-----~lsl~~~~~~~~~ 230 (341)
+| .||.+. + ..|+. .++--++.|-. .+.|.+||||. |=- |. ...+..++.-|.+
T Consensus 177 iP--FYGsy~-------E-~DPVk----iA~EGv~~Fk~----E~~diIivDTS-GRHkQe~~LF~Em~qv~~Ai~Pd~i 237 (453)
T TIGR01425 177 IP--FYGSYL-------E-SDPVK----IASEGVEKFKK----EKFDIIIVDTS-GRHKQEEELFEEMVQVAEAIKPDSI 237 (453)
T ss_pred CC--CCCCCC-------C-CCCEE----EECCCHHHHHC----CCCCEEEEECC-CCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 97--120104-------8-98707----80020113221----27847998379-8732258888998768633499836
Q ss_pred EEEECCCCCHHHHH
Q ss_conf 67421443113456
Q gi|254780831|r 231 VIVSTPQDLALIDV 244 (341)
Q Consensus 231 iiVttP~~~s~~da 244 (341)
|-|.= -|+--|
T Consensus 238 ifVMD---GsIGQA 248 (453)
T TIGR01425 238 IFVMD---GSIGQA 248 (453)
T ss_pred EEEEC---CCHHHH
T ss_conf 99806---616678
No 106
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.57 E-value=9.6e-05 Score=51.60 Aligned_cols=42 Identities=33% Similarity=0.538 Sum_probs=34.9
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCC
Q ss_conf 542010244666542578999989872357--7506988224678
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYG 136 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~ 136 (341)
-++|++.. |-=||||||+.+-||..++.. +++|+|+-+|-|-
T Consensus 193 ~~~vi~lv-GPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyR 236 (282)
T TIGR03499 193 QGGVIALV-GPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYR 236 (282)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 67279997-788875788999999999997389967999807776
No 107
>KOG0780 consensus
Probab=97.51 E-value=0.00052 Score=46.73 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=38.7
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 420102446665425789999898723577506988224678765
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
..||... |=-|+||||+.+-||+.+.++|+|++|+=||.|.+..
T Consensus 101 psVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780 101 PSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred CCEEEEE-ECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 7089998-3057886300899999998468724577602245306
No 108
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.00033 Score=48.04 Aligned_cols=162 Identities=23% Similarity=0.312 Sum_probs=86.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 42010244666542578999989872357750698822467876531000245631123344576632230322333435
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLV 174 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~ 174 (341)
..+|.+. |=-||||||+-.-||..|.+.|++|+|.-+|-|....-.=|. ...++-|+.+++-. .
T Consensus 139 p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~-------------~w~er~gv~vI~~~--~ 202 (340)
T COG0552 139 PFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE-------------VWGERLGVPVISGK--E 202 (340)
T ss_pred CEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------------HHHHHHCCEEECCC--C
T ss_conf 6799999-348886371799999999978986999823347899999999-------------99999599278259--9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CHHHHCC--------C-----CCCEEEEECCCCC
Q ss_conf 52210001342024789998675213777589974556444210--0000002--------2-----3402674214431
Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH--LTIAQKI--------P-----LSGVVIVSTPQDL 239 (341)
Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~--lsl~~~~--------~-----~~~~iiVttP~~~ 239 (341)
..|.+. .+..+++.- .-.++|+||+||. |--| ..|..-+ + .++.++|. +.+
T Consensus 203 G~DpAa-----VafDAi~~A----kar~~DvvliDTA---GRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl--DAt 268 (340)
T COG0552 203 GADPAA-----VAFDAIQAA----KARGIDVVLIDTA---GRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL--DAT 268 (340)
T ss_pred CCCCHH-----HHHHHHHHH----HHCCCCEEEEECC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE--ECC
T ss_conf 998089-----999999999----9769999999675---54457366899999999984645689984289997--756
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE
Q ss_conf 1345666777640012211445544202458778866512477658999998479789
Q gi|254780831|r 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL 297 (341)
Q Consensus 240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l 297 (341)
.=.++....+.|++ -+++=|+|.-. ++...+ -|..-.++.++++|++
T Consensus 269 tGqnal~QAk~F~e-av~l~GiIlTK----lDgtAK------GG~il~I~~~l~~PI~ 315 (340)
T COG0552 269 TGQNALSQAKIFNE-AVGLDGIILTK----LDGTAK------GGIILSIAYELGIPIK 315 (340)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEEE----CCCCCC------CCEEEEHHHHHCCCEE
T ss_conf 47568999999987-52886699970----246777------6243508888699979
No 109
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=97.31 E-value=0.0043 Score=40.59 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=101.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 2446665425789999898723577506988--22467876531000245631123344576632230322333435522
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNKGKNVAIL--DADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~G~~V~li--DaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341)
+|.-.=+|||||+|+-+=.+|++++++|==. -=|-==|+-|.+.--+..+ +++ .|++.+
T Consensus 4 iAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVGPDYIDP~fH~~aTGr~sR--------------NLD----sF~~~~- 64 (464)
T TIGR00379 4 IAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVGPDYIDPSFHTLATGRKSR--------------NLD----SFFMSE- 64 (464)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--------------CCC----HHHHHH-
T ss_conf 8305687547899999999986186324654425874378845411478666--------------768----533028-
Q ss_pred CCCCCCCCCHHHHHHH-HHHHHCCCCC--CEEEEECCCC---------CCCCCCHHHHCCC-CC-CEEEEECCCCCHHHH
Q ss_conf 1000134202478999-8675213777--5899745564---------4421000000022-34-026742144311345
Q gi|254780831|r 178 VAMIWRGPMVQSAIMH-MLHNVVWGQL--DFLLIDMPPG---------TGDAHLTIAQKIP-LS-GVVIVSTPQDLALID 243 (341)
Q Consensus 178 ~~~~~rg~~~~~~l~~-~l~~~~w~~~--D~liiD~ppG---------~gd~~lsl~~~~~-~~-~~iiVttP~~~s~~d 243 (341)
..+++ |.++. ..- |+=||-==-| .+|. -|.+...+ ++ =+|+|..-+-++-+.
T Consensus 65 -----------~~i~~~F~~~~--~~~Gs~~s~IEGv~GLYdg~Py~a~~d~-gStA~vAk~L~~PvvLv~n~~~L~~sa 130 (464)
T TIGR00379 65 -----------AQIKELFIRHS--KGAGSDVSIIEGVRGLYDGIPYSAISDK-GSTASVAKALDAPVVLVVNAKRLSRSA 130 (464)
T ss_pred -----------HHHHHHHHHHH--CCCCCCEEEECCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf -----------99999999861--3478965797274134367688776877-518899998659889999564033578
Q ss_pred H--HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHH--CCCEEEECCCCHHHHHHHCC-C-CCEE
Q ss_conf 6--667776400122114455442024587788665124776589999984--79789882799899975028-8-2179
Q gi|254780831|r 244 V--KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKI--GIPFLESVPFDMDVRVLSDL-G-IPIV 317 (341)
Q Consensus 244 a--~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~--~i~~lg~IP~d~~i~~a~~~-g-~P~v 317 (341)
| .++-..|. -+|.+-|||.|. + -++||. ...+...|+| |+++||.||...++.--.+. | +|..
T Consensus 131 aAiv~Gy~~fd-p~V~l~GVILN~---V---~~~rH~----~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~ 199 (464)
T TIGR00379 131 AAIVLGYRSFD-PDVKLKGVILNR---V---GSERHL----EKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAV 199 (464)
T ss_pred HHHHHHHHHCC-CCCEEEEEEEEE---E---CCHHHH----HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 67764134308-983178788731---0---774468----999999886368945887773675321477546531661
Q ss_pred EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97799989999999999999983
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
+. -+...++.+..||+-+.+.|
T Consensus 200 E~-l~~~~~~~~~~la~~~e~~l 221 (464)
T TIGR00379 200 ER-LDEIIQQILDWLAEVVEKYL 221 (464)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHC
T ss_conf 35-31789999999999999744
No 110
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.28 E-value=0.00097 Score=44.92 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=85.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 420102446665425789999898723--577506988224678765310002456311233445766322303223334
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK--NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala--~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341)
++||+.. |--||||||+-+-||.-+. ..-+||++|-.|-|.- |...+...-.+-.=.|+. +
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI------GA~EQLk~Ya~im~vp~~-----v----- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI------GAVEQLKTYADIMGVPLE-----V----- 265 (407)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH------HHHHHHHHHHHHHCCCEE-----E-----
T ss_conf 8579998-9988758879999999997532576068997144115------289999999998699559-----9-----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCE-EEEECCCCCHHHHH
Q ss_conf 3552210001342024789998675213777589974556444--2100-----00000223402-67421443113456
Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGV-VIVSTPQDLALIDV 244 (341)
Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~-iiVttP~~~s~~da 244 (341)
+...+ -+..++.+| .++|+++|||. |-+ |... .+.+..+.... ++++. -+...|.
T Consensus 266 -v~~~~-------el~~ai~~l------~~~d~ILVDTa-Grs~~D~~~i~el~~~~~~~~~i~~~Lvlsa--t~K~~dl 328 (407)
T COG1419 266 -VYSPK-------ELAEAIEAL------RDCDVILVDTA-GRSQYDKEKIEELKELIDVSHSIEVYLVLSA--TTKYEDL 328 (407)
T ss_pred -ECCHH-------HHHHHHHHH------HCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC--CCCHHHH
T ss_conf -63999-------999999985------31888999689-9883378999999999703566217999845--7646889
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHHHH
Q ss_conf 66777640012211445544202458778866512477658999998479789----88-279989997
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDVRV 308 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i~~ 308 (341)
+..++-|+.++ +-|+|.- ..++...+ |..=.+..+-+.|+. |+ ||.|..+..
T Consensus 329 kei~~~f~~~~--i~~~I~T-------KlDET~s~---G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~ 385 (407)
T COG1419 329 KEIIKQFSLFP--IDGLIFT-------KLDETTSL---GNLFSLMYETRLPVSYVTNGQRVPEDIVVAN 385 (407)
T ss_pred HHHHHHHCCCC--CCEEEEE-------CCCCCCCH---HHHHHHHHHHCCCEEEEECCCCCCCHHHHCC
T ss_conf 99999724588--6616897-------13356763---3899999996897499717987870355358
No 111
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.00031 Score=48.19 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=88.9
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 46542010244666542578999989872357750698822467876531000245631123344576632230322333
Q gi|254780831|r 92 LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA 171 (341)
Q Consensus 92 ~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g 171 (341)
....+||+.. |=-||||||+.+-||..|.+.|++|+|+-+|.|.|....=|-.- ...-|+.+.+
T Consensus 203 l~~g~VIaLV-GvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~-------------g~rlgVpV~~-- 266 (407)
T PRK12726 203 LSNHRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY-------------ADKLDVELIV-- 266 (407)
T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-------------HHHHCCEEEE--
T ss_conf 0369089998-99989789999999999997799179997066778899999999-------------9997964998--
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-CH----HHHCCCCCCEEEEECCCCCHHHHH
Q ss_conf 43552210001342024789998675213777589974556444--210-00----000022340267421443113456
Q gi|254780831|r 172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-LT----IAQKIPLSGVVIVSTPQDLALIDV 244 (341)
Q Consensus 172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-ls----l~~~~~~~~~iiVttP~~~s~~da 244 (341)
..+.+. +..++..+ .. -..+|++||||. |-. |.. +. +.....-+..++|..- -..-.+.
T Consensus 267 ---~~dpa~------l~~av~~~-a~--~~~~DvVIIDTA-GRl~~d~~Lm~EL~ki~~vi~P~~~lLV~da-g~~~~~v 332 (407)
T PRK12726 267 ---ATSPAE------LEEAVQYM-TY--VNCVDHILIDTV-GRNYLAEESVSEISAYTDVVHPDLTCFTFSS-GMKSADV 332 (407)
T ss_pred ---ECCHHH------HHHHHHHH-HH--CCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHH
T ss_conf ---188899------99999999-86--289998999699-9881349999999998733289669999367-5669999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE--EE---CCCCH
Q ss_conf 66777640012211445544202458778866512477658999998479789--88---27998
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL--ES---VPFDM 304 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l--g~---IP~d~ 304 (341)
.+....+. .+++-|+|... .+... .-|.+-.++.++++|+. |. ||.|-
T Consensus 333 ~qa~~~~~--~v~ItGiILTK-------LDgtA---KGG~aLSi~~~~~lPI~fIG~GEkIPEDi 385 (407)
T PRK12726 333 MTILPKLA--EIPIDGFIITK-------MDETT---RIGDLYTVMQETNLPVLYMTDGQNITENI 385 (407)
T ss_pred HHHHHHHC--CCCCCEEEEEE-------CCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 99998704--79998799970-------14789---85399999999888979994799997012
No 112
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.24 E-value=0.00082 Score=45.38 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCEECCCCCCCCCCCCCCCCCC-CCCEEECCCCC
Q ss_conf 4201024466654257899998987235775069882246-787653100024563112334457663-22303223334
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-YGPSIPKLLKISGKVEISDKKFLKPKE-NYGIKIMSMAS 172 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-~~ps~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s~g~ 172 (341)
.|-||+. |.+|-||||++=.|-+.-... .|.+-+++.. .|-.+ .| ..|.+ ..|+.+-|
T Consensus 2 ~Rniai~-gH~gaGKTtL~EalL~~~G~i-~r~G~V~~~~~~g~t~------------~D---~~~eE~~R~iSi~~--- 61 (267)
T cd04169 2 RRTFAII-SHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHAT------------SD---WMEIEKQRGISVTS--- 61 (267)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHCCCC-CCCCEEEECCCCCCCC------------CC---CHHHHHHCCCEEEC---
T ss_conf 0179998-479999899999999866863-3385463036888604------------68---87999865944863---
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35522100013420247899986752137775899745564442100000002-23402674214431134566677764
Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKI-PLSGVVIVSTPQDLALIDVKRAISMY 251 (341)
Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~-~~~~~iiVttP~~~s~~da~r~~~~~ 251 (341)
. +....|.+.-+-+|||| |..|=.-.+...+ ..|++++|.....---....|..+++
T Consensus 62 -----------------~----~~~~~w~~~kinliDTP-G~~DF~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a 119 (267)
T cd04169 62 -----------------S----VMQFEYRDCVINLLDTP-GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVC 119 (267)
T ss_pred -----------------C----EEEEEECCEEEEEEECC-CCHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHH
T ss_conf -----------------6----37887899899999796-9778999999999886454799525666535589999999
Q ss_pred HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCE-EEECCC
Q ss_conf 001221144554420245877886651247765899999847978-988279
Q gi|254780831|r 252 QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPF-LESVPF 302 (341)
Q Consensus 252 ~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~-lg~IP~ 302 (341)
++.++|.+ +++|. .+..+-. | ....+.+.+.++... .=++|+
T Consensus 120 ~~~~iP~i-ifINK----mDr~~ad---f-~~~l~~i~~~lg~~~vpi~lPi 162 (267)
T cd04169 120 RLRGIPII-TFINK----LDREGRD---P-LELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHCCCCEE-EEEEC----CCCCCCC---H-HHHHHHHHHHHCCCCCEEEEEE
T ss_conf 97299979-99853----4567898---7-8999999998687751168775
No 113
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.17 E-value=0.0031 Score=41.55 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=83.8
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCEECC-------C--CCCCCCCCCCCCCCCC
Q ss_conf 65420102446665425789999898723577506988224678765-310002-------4--5631123344576632
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI-PKLLKI-------S--GKVEISDKKFLKPKEN 162 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~-~~~lg~-------~--~~~~~~~~~~i~p~~~ 162 (341)
|..+++-+| |--|+||||+---|...|-+.|+||++|=-|..+|-. .-+||= . .+.-..+.-+|.|...
T Consensus 36 GnA~~vG~T-G~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~pt 114 (333)
T TIGR00750 36 GNAHVVGIT-GVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPT 114 (333)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 790787664-6888857779999989997659768999887975975514545688775442222332289856767766
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCH
Q ss_conf 23032233343552210001342024789998--6752137775899745564442100000002234026742144311
Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHM--LHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLA 240 (341)
Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~--l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s 240 (341)
.|.. |- ++++-.++ |.|.. -||++||-|= |.|=.--.++..+ |-.|+||=|.-=-
T Consensus 115 rG~l----GG--------------ls~at~~~~~lldA~--G~DVI~vETV-GVGQSEVdi~~~a--DT~v~v~~pg~GD 171 (333)
T TIGR00750 115 RGSL----GG--------------LSKATRELVKLLDAA--GYDVILVETV-GVGQSEVDIINMA--DTFVVVTIPGTGD 171 (333)
T ss_pred CCCH----HH--------------HHHHHHHHHHHHHHC--CCCEEEEEEE-CCCHHHHHHHHHH--CEEEEEECCCCCC
T ss_conf 6752----57--------------879999999999863--8987999841-5752487887341--5058985488783
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 34566677764001221144554420
Q gi|254780831|r 241 LIDVKRAISMYQKMNIPIIGMIENMS 266 (341)
Q Consensus 241 ~~da~r~~~~~~~~~~~i~GiV~NMs 266 (341)
=..+.|+.-| +-- +| +|+|.+
T Consensus 172 d~Q~iKaG~m-Eia--DI--~VVNKa 192 (333)
T TIGR00750 172 DVQGIKAGVM-EIA--DI--YVVNKA 192 (333)
T ss_pred HHHHHHHHHH-EEE--EE--EEEECC
T ss_conf 4666654430-232--48--788168
No 114
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.16 E-value=0.004 Score=40.78 Aligned_cols=152 Identities=20% Similarity=0.326 Sum_probs=82.2
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCC
Q ss_conf 1024466654257899998987235775069882246787653100024563112334457663-223032233343552
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKE-NYGIKIMSMASLVDE 176 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s~g~l~~~ 176 (341)
|++. |.+|-||||++=.|-+.- ..=.|.+=+|- |-++ .| ..|.+ ..|+.+-|
T Consensus 2 i~ii-gH~~aGKTtL~E~lL~~~-g~i~~~G~V~~---g~t~------------~D---~~~~E~~RgiSi~s------- 54 (268)
T cd04170 2 IALV-GHSGSGKTTLAEALLYAT-GAIDRLGSVED---GTTV------------SD---YDPEEIKRKMSIST------- 54 (268)
T ss_pred EEEE-ECCCCCHHHHHHHHHHHC-CCCCCCCCCCC---CCCC------------CC---CCHHHHHCCCCEEC-------
T ss_conf 8999-089999899999999966-99665765458---9735------------77---87889867967513-------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 210001342024789998675213777589974556444210000000-2234026742144311345666777640012
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341)
+ +....|.+.-+-+|||| |..|-.-.+... -.+|++|+|.....---....+..+++++.+
T Consensus 55 -------------~----~~~~~w~~~~inliDTP-G~~DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~ 116 (268)
T cd04170 55 -------------S----VAPLEWKGHKINLIDTP-GYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAG 116 (268)
T ss_pred -------------C----EEEEEECCEEEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf -------------5----57888899799998698-97579999999840478399994187547687999999999859
Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCCC
Q ss_conf 211445544202458778866512477658999998479789-882799
Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPFD 303 (341)
Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~d 303 (341)
+|.+ +.+|. .++.+.. | ....+.+.+.++.+.+ -++|..
T Consensus 117 iP~i-~fINK----mDr~~ad---~-~~~l~~i~~~lg~~~vp~~~Pig 156 (268)
T cd04170 117 IPRI-IFINK----MDRERAD---F-DKTLAALQEAFGRPVVPLQLPIG 156 (268)
T ss_pred CCEE-EEEEC----CCCCCCC---H-HHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 9989-99978----7878996---4-77999999986898499996652
No 115
>PRK13768 GTPase; Provisional
Probab=97.12 E-value=0.0011 Score=44.63 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 44666542578999989872357750698822467
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
.-|--|-||||....+.--|...|++|.++-+|..
T Consensus 7 ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA 41 (253)
T PRK13768 7 FLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 98999998899999999999976997599978986
No 116
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=96.87 E-value=0.0038 Score=40.95 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=90.7
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEE-----ECC
Q ss_conf 420102446665425789999898723577506988224678765310002456311233445766322303-----223
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIK-----IMS 169 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~-----~~s 169 (341)
.+++-+++--.|||||.++.+|+.+|.++|.||+++--=. ++ .|-+..-.... +.....+.+. .++
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~--~~----~~~~~~~~~e~---~~~~~~~~l~~~~~~~~~ 72 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG--TR----TGKDADDLTEE---DIRATSSSLTYAEPLVLS 72 (354)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CC----CCCCCCHHHHH---HHHHHHHHCCCCCCCCHH
T ss_conf 6149984268886288999999999997073269984045--55----67765206899---998765205667530000
Q ss_pred CC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE------CCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 33-43552210001342024789998675213777589974------556444210000000223402674214431134
Q gi|254780831|r 170 MA-SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID------MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341)
Q Consensus 170 ~g-~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD------~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341)
.. .+...++.-.|.+ .+...+.+.. .+.|++++. ..|+..+....+++.+. ..+++|..+...+..
T Consensus 73 ~ae~L~~~~~~d~l~e-----~i~~~y~e~~-~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~~vlva~~~~~~~~ 145 (354)
T COG0857 73 FAEVLLSTGQDDVLLE-----EILANYAELA-KDADVVVVEGDVPTREGPYALDLNYEIAKNLN-AAAVLVARALLVTPY 145 (354)
T ss_pred HHHHHHCCCCCHHHHH-----HHHHHHHHHH-CCCCEEEECCCEECCCCCCCCCCCHHHHHHCC-CCHHHCCCCCCCCHH
T ss_conf 6888741564167999-----9999999872-36766884253001335764101479885068-115431141337766
Q ss_pred H----HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 5----6667776400122114455442024587788665124776589999984797898827998999
Q gi|254780831|r 243 D----VKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341)
Q Consensus 243 d----a~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341)
. +..+...|...+-.+.|+|+|-+ -...++. -+...+.+-+..+...++.+|.++-++
T Consensus 146 ~~~~~i~~~~~~~~~~~~~l~gVv~N~~--~~~~~~~-----~~~~l~~~~~~~~~~~~~~l~~~~ll~ 207 (354)
T COG0857 146 ELKSRVELALAAFGAAGNNLAGVVINNA--PVDEAGR-----TEDLLAEFLESSGIAVVGVLPPNRLLR 207 (354)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCC--CHHHHHH-----HHHHHHHHHHHCCCCCCCCCCHHHHHC
T ss_conf 6566999999886056883589996578--7555232-----446899876302543224478778753
No 117
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=96.84 E-value=0.0024 Score=42.34 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 6665425789999898723577506988224678
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
|--|.||||....+.--+...|+++.++-+|...
T Consensus 3 GpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~ 36 (234)
T pfam03029 3 GGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAA 36 (234)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9898988999999999999779975999789866
No 118
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.74 E-value=0.009 Score=38.46 Aligned_cols=173 Identities=25% Similarity=0.350 Sum_probs=95.5
Q ss_pred CCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC-EE
Q ss_conf 22234654201024466654257899998987235775069882246787653100024563112334457663223-03
Q gi|254780831|r 88 QRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYG-IK 166 (341)
Q Consensus 88 ~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~g-i~ 166 (341)
+.+.++.++-|...+-----|||.+++.|+.+|..+ |.+. -+ ||.+-.+. +..... + .|.+.|+ ++
T Consensus 237 ~~k~~~~kkgiiLl~TgS~SGKTFl~T~i~~kL~~k---vfv~--Ki-GpDvRDIV---PsLYll-r---E~M~ky~SIk 303 (482)
T PRK06278 237 RNKNPEVKKGIILLATGSESGKTFLSTSIVSKLRGK---TFVS--KI-GPDVRDIV---PSLYLL-R---EPMEKYSSIK 303 (482)
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCC---EEEE--EC-CCCHHHCC---HHHHHC-C---CHHHHCCCEE
T ss_conf 047888996599984378777431167788875064---8998--60-88666525---246310-4---2122046168
Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE--CCCCCCC---C-CCHHHHCCCCCC--EEEEECCCC
Q ss_conf 2233343552210001342024789998675213777589974--5564442---1-000000022340--267421443
Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID--MPPGTGD---A-HLTIAQKIPLSG--VVIVSTPQD 238 (341)
Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD--~ppG~gd---~-~lsl~~~~~~~~--~iiVttP~~ 238 (341)
+-. ||=|- +++|+.-+.-.+|||+||. |.+-||- . ..|-+|.....+ +.+|+....
T Consensus 304 I~~-------------rGW~~---~~efle~vk~sdYd~~iiEGVMgafTg~Ln~k~~YS~aeIak~lg~PvyivS~cnk 367 (482)
T PRK06278 304 ISD-------------RGWME---PSEFLEFVKNSDYDNYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSK 367 (482)
T ss_pred ECC-------------CCCCC---HHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 546-------------78768---99999997347987899850478888875057887689999855998899942555
Q ss_pred C----HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE
Q ss_conf 1----134566677764001221144554420245877886651247765899999847978988
Q gi|254780831|r 239 L----ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES 299 (341)
Q Consensus 239 ~----s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~ 299 (341)
. |..|+..-..+++++++.+-|+|.|.-| ..++|- .++.+++.+++.++|.
T Consensus 368 sGIEgAfve~~ay~slLk~~Gv~v~giILNKvY--------n~~ife--kvk~~~~~~~i~~~~V 422 (482)
T PRK06278 368 GGIEGAFVELMAYYSLLKEMGVNVAGIILNKVY--------NMEIFE--KVKKIASNLNINVIGV 422 (482)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC--------CHHHHH--HHHHHHHHCCCEEEEE
T ss_conf 660478999999999998669735889974112--------588999--9999998659529861
No 119
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0017 Score=43.20 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=86.1
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCEEECC
Q ss_conf 65420102446665425789999898723-577506988224678765310002456311233445--766322303223
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL--KPKENYGIKIMS 169 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i--~p~~~~gi~~~s 169 (341)
+-++||+.. |-=||||||+.+-||..++ +.|+||+||-+|-|.-.. ++ +..+- ..| .|+ +++.
T Consensus 221 ~~~kvi~lV-GPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgA-----vE-QLktY--a~Il~iPv-----~vv~ 286 (432)
T PRK12724 221 NQRKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA-----IE-QLKRY--ADTMGMPF-----YPVK 286 (432)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-----HH-HHHHH--HHHHCCCE-----EEEE
T ss_conf 776299998-99998889999999999999749927999526653779-----99-99999--99859945-----9951
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--C-CCCH----HHHCCC---CCCEEEEECCCCC
Q ss_conf 3343552210001342024789998675213777589974556444--2-1000----000022---3402674214431
Q gi|254780831|r 170 MASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--D-AHLT----IAQKIP---LSGVVIVSTPQDL 239 (341)
Q Consensus 170 ~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d-~~ls----l~~~~~---~~~~iiVttP~~~ 239 (341)
+. +-+++-+.. .+.|+++|||+ |-| | .++. +.+.++ .....+|... .+
T Consensus 287 -----~~------------~el~~al~~---~~~DlILIDTA-GrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSa-Tt 344 (432)
T PRK12724 287 -----DI------------KKFKETLAR---DGSELILIDTA-GYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSS-TS 344 (432)
T ss_pred -----CH------------HHHHHHHHH---CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CC
T ss_conf -----89------------999999985---69999999299-9897899999999999986366788517999978-89
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHHH
Q ss_conf 1345666777640012211445544202458778866512477658999998479789----88-27998999
Q gi|254780831|r 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDVR 307 (341)
Q Consensus 240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i~ 307 (341)
.-.|....++.|+.+++ -|+|.- ..++.. .-|..-.++.+.+.|+. |+ +|.|....
T Consensus 345 k~~dl~~ii~~f~~l~~--~~lIfT-------KLDET~---s~G~ilni~~~~~~PisYiT~GQ~VPdDI~~A 405 (432)
T PRK12724 345 SYHHTLTVLKAYESLNY--RRILLT-------KLDEAD---FLGSFLELADTYSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred CHHHHHHHHHHHCCCCC--CEEEEE-------ECCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCHHHC
T ss_conf 98999999998426999--849997-------122779---86699999999889869980899797173335
No 120
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.67 E-value=0.0077 Score=38.93 Aligned_cols=151 Identities=22% Similarity=0.293 Sum_probs=79.3
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCC
Q ss_conf 1024466654257899998987235775069882246787653100024563112334457663-223032233343552
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKE-NYGIKIMSMASLVDE 176 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s~g~l~~~ 176 (341)
||+. |.+|-||||++=.|.+.- ..=.|.+=+|-- | ..+.. .|.+ ..|+.+-|
T Consensus 2 iai~-gH~gaGKTtL~EalL~~a-g~i~r~G~v~~g----~--tv~D~------------~~eE~~R~isi~~------- 54 (270)
T cd01886 2 IGII-AHIDAGKTTTTERILYYT-GRIHKIGEVHGG----G--ATMDF------------MEQERERGITIQS------- 54 (270)
T ss_pred EEEE-ECCCCCHHHHHHHHHHHC-CCCCCCCEECCC----C--CCCCC------------CHHHHHCCCEEEC-------
T ss_conf 8999-689999889999999866-873558155389----7--55668------------4889876870733-------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2100013420247899986752137775899745564442100000002-234026742144311345666777640012
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKI-PLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~-~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341)
. +....|.+.-+-+|||| |..|=.-.+...+ ..|++++|.....---..+.|..+++++.+
T Consensus 55 -------------~----~~~~~w~~~~inliDTP-G~~DF~~e~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~ 116 (270)
T cd01886 55 -------------A----ATTCFWKDHRINIIDTP-GHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270)
T ss_pred -------------C----EEEEEECCEEEEEEECC-CCHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf -------------6----68999899899998696-96788999999987755599998467644263699998899849
Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCC
Q ss_conf 211445544202458778866512477658999998479789-88279
Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPF 302 (341)
Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~ 302 (341)
+|.+ +++|+ -++.+. + | ......+.+.++.+.+ -++|+
T Consensus 117 lP~i-~fINK----mDre~a--d-~-~~~l~~i~~~lg~~~vp~~~Pi 155 (270)
T cd01886 117 VPRI-AFVNK----MDRTGA--D-F-FRVVEQIREKLGANPVPLQLPI 155 (270)
T ss_pred CCEE-EEEEC----CCCCCC--C-C-HHHHHHHHHHHCCCEEEEEEEE
T ss_conf 9989-99988----787788--7-1-6689999998589738898563
No 121
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.67 E-value=0.0031 Score=41.51 Aligned_cols=158 Identities=16% Similarity=0.287 Sum_probs=84.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
.||.=.=|-||+||||++.-+|+.=+++|++|..||.- .|-|..++.-+........+..+. .+.+...-.|.+
T Consensus 12 G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTE-GGLS~ER~~q~~~~~~~D~e~~~~-----~~iv~~~~~f~e 85 (223)
T TIGR02237 12 GIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTE-GGLSPERFKQIAEDRALDPERVLS-----NVIVFEVFDFDE 85 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHCCCCCHHHHHC-----CEEEECCCCHHH
T ss_conf 35889875899867899999999998618958999628-983289999986305889888841-----535523535678
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCC-CCEEEEECCCCCHHHHHHH----HHHH
Q ss_conf 2210001342024789998675213777589974556444210000000223-4026742144311345666----7776
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPL-SGVVIVSTPQDLALIDVKR----AISM 250 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~-~~~iiVttP~~~s~~da~r----~~~~ 250 (341)
.+.++ .+ ...|..+- -..+|-+|||+--+ +. .+.. +.. .-+.....+..+ ...|
T Consensus 86 Q~~ai-------~~-~~~~~~~~-G~~~~LvVvDs~t~-------~Y-Rle~~~d~----nk~~~~~~~l~~Ql~~Ll~l 144 (223)
T TIGR02237 86 QEVAI-------QK-TSKLIDRD-GDKADLVVVDSFTA-------LY-RLERSDDR----NKQISLNRELARQLTLLLSL 144 (223)
T ss_pred HHHHH-------HH-HHHHHHCC-CCEEEEEEEECCHH-------HH-HHCCCCCC----HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999-------99-99998606-88331488815334-------54-20257860----25679999999999999999
Q ss_pred HHCCCCCHHHHHHHHCCCCCCCC-CCEEECCCC
Q ss_conf 40012211445544202458778-866512477
Q gi|254780831|r 251 YQKMNIPIIGMIENMSYFLASDT-GKKYDLFGN 282 (341)
Q Consensus 251 ~~~~~~~i~GiV~NMs~~~~~~~-~~~~~~fg~ 282 (341)
++|.++++ ||-|=-|....+- .+...+||-
T Consensus 145 Ark~~~AV--viTNQvy~d~~~gG~~~~~P~GG 175 (223)
T TIGR02237 145 ARKKDLAV--VITNQVYTDVNNGGSETLRPLGG 175 (223)
T ss_pred HHHCCCCE--EEEEEEEEEECCCCCCEEEECCC
T ss_conf 87649978--99711588637797320100331
No 122
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=96.59 E-value=0.052 Score=33.35 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=96.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
+.+++..----|||=|++..|.-+|.++|.+...+-..=.| .|. ..+|+-+=+ +.
T Consensus 114 ~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTG----ili-----------------~g~Gv~iDa----v~ 168 (302)
T pfam07755 114 KRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTG----ILI-----------------AGYGVPLDA----VP 168 (302)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCE----EEE-----------------ECCEEEECC----CH
T ss_conf 78999605733407899999999999779984799727613----688-----------------152478432----24
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE-----CCCCCCCCCCHHHHCCCCCCEEEEECCCCC-----------
Q ss_conf 2210001342024789998675213777589974-----556444210000000223402674214431-----------
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID-----MPPGTGDAHLTIAQKIPLSGVVIVSTPQDL----------- 239 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD-----~ppG~gd~~lsl~~~~~~~~~iiVttP~~~----------- 239 (341)
.| .++.+++++..+.. .+-|+++|- +.|+.+-+.+.+.....-|.+|+...|...
T Consensus 169 ~D--------FvaGavE~~v~~~~-~~~d~iiIEGQgSL~hP~y~gvsl~lL~Gs~Pd~lIL~H~p~R~~~~~~~~~~iP 239 (302)
T pfam07755 169 AD--------FVAGAVEALVLDAA-EEDDWIVIEGQGSLSHPAYSGVTLGLLHGSQPDALVLCHRPGRKHRRGFPHYPLP 239 (302)
T ss_pred HH--------HHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCCCCC
T ss_conf 76--------67678999998645-4678799916543236656654598860789986999637898622787668899
Q ss_pred HHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC
Q ss_conf 134566677764001--22114455442024587788665124776589999984797898827
Q gi|254780831|r 240 ALIDVKRAISMYQKM--NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341)
Q Consensus 240 s~~da~r~~~~~~~~--~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341)
++.+.++..+.+... +.+++||-.|-+.+ ++.. -+...+++.+++++|..--+.
T Consensus 240 ~l~~~i~l~e~~a~~~~~~kvvgIslNt~~l-----~~~e---a~~~~~~~~~~~glPv~Dp~r 295 (302)
T pfam07755 240 PLEEEIELIEALAGTTPPAKVVGISLNTRGL-----SEAE---AREAIERIEEELGLPVTDPVR 295 (302)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CHHH---HHHHHHHHHHHHCCCEEECCC
T ss_conf 9899999999973647997399999557879-----9999---999999999998997471212
No 123
>KOG0781 consensus
Probab=96.26 E-value=0.0047 Score=40.32 Aligned_cols=97 Identities=24% Similarity=0.282 Sum_probs=55.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
.+|.. -|=-||||||--+-+|+-|-+.++||++.-||-|....-.-|+..-+.-. .+.+ +-+.+.--|| +
T Consensus 379 Yvi~f-vGVNGVGKSTNLAKIayWLlqNkfrVlIAACDTFRsGAvEQLrtHv~rl~----~l~~---~~v~lfekGY--g 448 (587)
T KOG0781 379 YVISF-VGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLS----ALHG---TMVELFEKGY--G 448 (587)
T ss_pred EEEEE-EEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHH----HHCC---CHHHHHHHHC--C
T ss_conf 59999-82147665132999999998578369998624312447899999999998----7455---2048886104--7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 221000134202478999867521377758997455
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMP 211 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~p 211 (341)
.|.+.+ +..||++ -++ ..+|+++|||.
T Consensus 449 kd~a~v-----ak~AI~~-a~~---~gfDvvLiDTA 475 (587)
T KOG0781 449 KDAAGV-----AKEAIQE-ARN---QGFDVVLIDTA 475 (587)
T ss_pred CCHHHH-----HHHHHHH-HHH---CCCCEEEEECC
T ss_conf 782899-----9999999-986---69878998354
No 124
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.24 E-value=0.011 Score=37.80 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=52.3
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 5213777589974556444210000000-223402674214431134566677764001221144554420245877886
Q gi|254780831|r 197 NVVWGQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGK 275 (341)
Q Consensus 197 ~~~w~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~ 275 (341)
...|.+.-+-+|||| |-.|-.-..... ...|++|+|.....---....|..+++++.++|.+ +++|. .+..+.
T Consensus 58 ~~~~~~~~~n~iDtP-G~~dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~i-ifiNK----mDre~a 131 (237)
T cd04168 58 SFQWEDTKVNLIDTP-GHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNK----IDRAGA 131 (237)
T ss_pred EEEECCEEEEEEECC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEE-EEEEC----CCCCCC
T ss_conf 999899879998898-846566689889763481699996588822344999999998599859-98624----457899
Q ss_pred EEECCCCCHHHHHHHHHCCCE
Q ss_conf 651247765899999847978
Q gi|254780831|r 276 KYDLFGNGGARFEAEKIGIPF 296 (341)
Q Consensus 276 ~~~~fg~~~~~~~a~~~~i~~ 296 (341)
. | ....+.+.+.++...
T Consensus 132 d---f-~~~l~~i~~~l~~~~ 148 (237)
T cd04168 132 D---L-EKVYQEIKEKLSSDI 148 (237)
T ss_pred C---H-HHHHHHHHHHHCCCE
T ss_conf 9---9-999999999978974
No 125
>KOG1532 consensus
Probab=96.14 E-value=0.02 Score=36.11 Aligned_cols=157 Identities=23% Similarity=0.332 Sum_probs=81.3
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCC---CCCCCEEECC
Q ss_conf 6542010244666542578999989872357750698822467876531000245631123344576---6322303223
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKP---KENYGIKIMS 169 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p---~~~~gi~~~s 169 (341)
..+.+|.|. |--|-||||+.--|-.-|.+.+.+--++.+|..-.++|--.+++-+-.+.-+..+.- -.++|| +.|
T Consensus 17 ~~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI-~Ts 94 (366)
T KOG1532 17 QRPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI-VTS 94 (366)
T ss_pred CCCCEEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHH
T ss_conf 687079999-447788413999999998623699808867888854888667756654309999998388998640-335
Q ss_pred CCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--------CCC-CCHHHHCCCCCCEEEEECCCCC
Q ss_conf 334-355221000134202478999867521377758997455644--------421-0000000223402674214431
Q gi|254780831|r 170 MAS-LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--------GDA-HLTIAQKIPLSGVVIVSTPQDL 239 (341)
Q Consensus 170 ~g~-l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--------gd~-~lsl~~~~~~~~~iiVttP~~~ 239 (341)
..+ .+.-++ . -.++.... .++||+|||||--+ |-+ .=+++...|.--+-+|-||..+
T Consensus 95 LNLF~tk~dq-----------v-~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~ 161 (366)
T KOG1532 95 LNLFATKFDQ-----------V-IELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRST 161 (366)
T ss_pred HHHHHHHHHH-----------H-HHHHHHHH-CCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 8999987899-----------9-99999742-204779974888068998427850158667613985999994477678
Q ss_pred HHHH----HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1345----6667776400122114455442
Q gi|254780831|r 240 ALID----VKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 240 s~~d----a~r~~~~~~~~~~~i~GiV~NM 265 (341)
+-+. -.-++.++-+.++|.+ ++.|.
T Consensus 162 ~p~tFMSNMlYAcSilyktklp~i-vvfNK 190 (366)
T KOG1532 162 SPTTFMSNMLYACSILYKTKLPFI-VVFNK 190 (366)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 841699889999999986268769-99714
No 126
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.03 E-value=0.017 Score=36.54 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=35.3
Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 2010244-66654257899998987235775069882246787
Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
-||.|-+ .=||.|||-++.-||-.|.++|++++++==. ||.
T Consensus 52 PVI~VGNitvGGTGKTP~v~~La~~L~~~G~~~~IiSRG-Yg~ 93 (332)
T PRK00313 52 PVIVVGNITVGGTGKTPLILWLIEHCRRRGLRVGVVSRG-YGA 93 (332)
T ss_pred CEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCC
T ss_conf 899987873588777799999999999779965898646-567
No 127
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=95.98 E-value=0.0074 Score=39.03 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=39.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 010244666542578999989872357750698822467876531000245
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~ 147 (341)
+-|++--.-|.||||+|+-|+-+|++.|+++.+. ++-||+.-.||+.+
T Consensus 59 VTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiKG 106 (577)
T PRK13506 59 VTAVTPTPLGEGKTVTTIGLTQGLNALGQKVCAC---IRQPSMGPVFGVKG 106 (577)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCC
T ss_conf 9856898898984110987999998719845899---72688787406656
No 128
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=95.96 E-value=0.027 Score=35.27 Aligned_cols=12 Identities=8% Similarity=-0.034 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCE
Q ss_conf 899999847978
Q gi|254780831|r 285 ARFEAEKIGIPF 296 (341)
Q Consensus 285 ~~~~a~~~~i~~ 296 (341)
..++..+|+++.
T Consensus 447 ~~RLk~eygVev 458 (526)
T PRK00741 447 AHRLKNEYNVEA 458 (526)
T ss_pred HHHHHHHHCCEE
T ss_conf 999988739728
No 129
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=95.77 E-value=0.0079 Score=38.85 Aligned_cols=38 Identities=34% Similarity=0.445 Sum_probs=33.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
-||=.| |==|=||||+|.-|.-.|.++|+++-++|.|-
T Consensus 20 ~vlWlT-GLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDn 57 (187)
T TIGR00455 20 VVLWLT-GLSGSGKSTIANALEKKLEKKGYRVYVLDGDN 57 (187)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCE
T ss_conf 898511-68856357999999999996697499975863
No 130
>PRK07667 uridine kinase; Provisional
Probab=95.73 E-value=0.012 Score=37.60 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2010244666542578999989872357750698822467
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
-||+|+ |-.|-||||+|-.|+-.|.+.|..|.++-.|=|
T Consensus 15 ~iIgIa-G~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~ 53 (190)
T PRK07667 15 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDH 53 (190)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999977-989788999999999998665983799966624
No 131
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=95.68 E-value=0.097 Score=31.59 Aligned_cols=131 Identities=24% Similarity=0.488 Sum_probs=79.4
Q ss_pred CCCEECCCCCCCC----CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECC-
Q ss_conf 4201024466654----25789999898723577506988224678765310002456311233445766322303223-
Q gi|254780831|r 95 KKFVAVASGKGGV----GKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMS- 169 (341)
Q Consensus 95 ~~iiav~SgKGGV----GKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s- 169 (341)
.|+|.|+ ||| ||=-+|+-||.-|...|++|-.+=.|-|. |++ -+.|.|.+.+.+-+.+
T Consensus 4 ~KyifVT---GGV~SslGKGI~AAS~grLL~~~gl~Vt~iKiDPYi-------N~D-------pGTMsP~qHGEVFVt~D 66 (571)
T TIGR00337 4 MKYIFVT---GGVVSSLGKGITAASLGRLLKARGLKVTIIKIDPYI-------NID-------PGTMSPLQHGEVFVTDD 66 (571)
T ss_pred CEEEEEE---CCEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC-------CCC-------CCCCCCCCCCEEEEECC
T ss_conf 1179994---438504026789999999998558806576307755-------668-------76377863542788068
Q ss_pred -------CCC---CCCC-------------CCCCCC---CC----------CCHHHHHHHHHHHHCC-------CCCCEE
Q ss_conf -------334---3552-------------210001---34----------2024789998675213-------777589
Q gi|254780831|r 170 -------MAS---LVDE-------------NVAMIW---RG----------PMVQSAIMHMLHNVVW-------GQLDFL 206 (341)
Q Consensus 170 -------~g~---l~~~-------------~~~~~~---rg----------~~~~~~l~~~l~~~~w-------~~~D~l 206 (341)
.|. +++. ...++- || |.++..|+.....+.- .+.|++
T Consensus 67 G~EtDLDLGHYERFl~~~l~~~~NiTTGkIY~~Vi~kERkGdYLG~TVQiIPHiTnEIK~~I~~~A~~P~eDtG~~~Dv~ 146 (571)
T TIGR00337 67 GAETDLDLGHYERFLDTNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAKKPVEDTGSGADVV 146 (571)
T ss_pred CCEECCCCCCCHHHCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 87643666542122276677456610066899884103771214882798425546789999996037764567997479
Q ss_pred EEECCCCC-CCC------------------------CCHHHHCCCCCCE--EEEECCCCCHHHHHHH
Q ss_conf 97455644-421------------------------0000000223402--6742144311345666
Q gi|254780831|r 207 LIDMPPGT-GDA------------------------HLTIAQKIPLSGV--VIVSTPQDLALIDVKR 246 (341)
Q Consensus 207 iiD~ppG~-gd~------------------------~lsl~~~~~~~~~--iiVttP~~~s~~da~r 246 (341)
||-.. || ||+ |+|| +|.-.+ =+=|-|.+-|+.+.++
T Consensus 147 IvEiG-GTVGDIEs~PFLEAiRQ~~~e~G~Env~~iHvTL---VP~i~aagE~KTKPTQhSVKeLRs 209 (571)
T TIGR00337 147 IVEIG-GTVGDIESLPFLEAIRQLKKEVGRENVLFIHVTL---VPYIAAAGELKTKPTQHSVKELRS 209 (571)
T ss_pred EEEEC-CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE---CCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99837-7000003625899999999873898679998400---263144874787751278999986
No 132
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.33 E-value=0.025 Score=35.51 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=35.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
+||+|. |.-|.||||+..+|.-.|.++|+||+.+--|-++
T Consensus 2 kii~iv-G~snSGKTTLi~kli~~l~~~G~~V~~iKH~~H~ 41 (159)
T cd03116 2 KVIGFV-GYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 299999-6799999999999999999779859899734767
No 133
>PRK12377 putative replication protein; Provisional
Probab=95.23 E-value=0.018 Score=36.38 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=30.9
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 02446665425789999898723577506988224
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|.+|.-|||||.+|+.||..+.+.|++|..+-+-
T Consensus 104 lIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~ 138 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 89989999878899999999999879969998899
No 134
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=95.21 E-value=0.029 Score=35.08 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=33.2
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEE-EEECCCCCC
Q ss_conf 01024466654257899998987235775069-882246787
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVA-ILDADVYGP 137 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~-liDaDi~~p 137 (341)
+++|. |.-++||||++-.|.-.+.++|++++ ++|+|...+
T Consensus 2 ~v~i~-G~~~sGKttl~~~L~~~~~~~g~~~~~~~~~d~gq~ 42 (122)
T pfam03205 2 IVLVV-GPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHGQG 42 (122)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 79999-489998999999999999987994489998999987
No 135
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.06 E-value=0.067 Score=32.66 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=35.8
Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 2010244-6665425789999898723577506988224678765
Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
-||.|-+ -=||+|||-++.-|+-.|.++|++++++==- ||...
T Consensus 57 PVI~VGNitvGGTGKTP~vi~L~~~L~~~G~k~~IlSRG-Yg~~~ 100 (339)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG-YGAKV 100 (339)
T ss_pred CEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCC
T ss_conf 999986887688757799999999999769955998546-45556
No 136
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=94.97 E-value=0.041 Score=34.06 Aligned_cols=196 Identities=19% Similarity=0.289 Sum_probs=90.8
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE-------ECCCC---------CCCCCCCC-CCCCC
Q ss_conf 102446665425789999898723577506988224678765310-------00245---------63112334-45766
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKL-------LKISG---------KVEISDKK-FLKPK 160 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~-------lg~~~---------~~~~~~~~-~i~p~ 160 (341)
+-.+|. +|||++++-|--.|++.|++|.=+-.-- .|+.-+ .|... .|....+. .+.|-
T Consensus 7 ~GT~S~---~GKS~~~aglcRi~~~~G~~V~PFK~QN--MsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP~ 81 (486)
T COG1492 7 QGTTSD---AGKSFLVAGLCRILARRGYRVAPFKSQN--MSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKPC 81 (486)
T ss_pred EECCCC---CCHHHHHHHHHHHHHHCCCCCCCCHHHH--CCCCCEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 721477---6546752453488873577547870654--34660787799687550667898739987434287787035
Q ss_pred CCCCEEECCCCCCCCCCCCC-CCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC--------HHHHCCCCCC
Q ss_conf 32230322333435522100-0134--20247899986752137775899745564442100--------0000022340
Q gi|254780831|r 161 ENYGIKIMSMASLVDENVAM-IWRG--PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHL--------TIAQKIPLSG 229 (341)
Q Consensus 161 ~~~gi~~~s~g~l~~~~~~~-~~rg--~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~l--------sl~~~~~~~~ 229 (341)
...+.+++=.|--...-.+. +|+. +.+..++.+.+. ..+.++|++++--.=+-.++.| .++... -+-
T Consensus 82 sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~-~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~-dap 159 (486)
T COG1492 82 SDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLE-RLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIA-DAP 159 (486)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCHHHCCCCCCCCCCEEEEHHC-CCC
T ss_conf 888447999463446657178899988999999999998-754105589996379823227663661100220233-898
Q ss_pred EEEEECCCCC-HHHHHHHHHHHHH-CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 2674214431-1345666777640-0122114455442024587788665124776589999984797898827998999
Q gi|254780831|r 230 VVIVSTPQDL-ALIDVKRAISMYQ-KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341)
Q Consensus 230 ~iiVttP~~~-s~~da~r~~~~~~-~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341)
+|+|.-=+.- .+....-++.++. .-...+.|.|+|. |+ |.. .+| +.+.+.+.+..++|+||.+|+.....
T Consensus 160 vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINk--FR----Gd~-~ll-~~gik~Le~~tg~~vlGv~P~~~~~~ 231 (486)
T COG1492 160 VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINK--FR----GDE-SLL-DPGLKWLEELTGVPVLGVLPYLKDAL 231 (486)
T ss_pred EEEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEE--EC----CCH-HHH-HHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 89999511564541730212236876760014799963--17----987-887-45999999861974675652555455
Q ss_pred H
Q ss_conf 7
Q gi|254780831|r 308 V 308 (341)
Q Consensus 308 ~ 308 (341)
+
T Consensus 232 ~ 232 (486)
T COG1492 232 R 232 (486)
T ss_pred C
T ss_conf 7
No 137
>PRK06696 uridine kinase; Validated
Probab=94.95 E-value=0.034 Score=34.63 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2010244666542578999989872357750698822467
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
-+|+|. |-.|-||||+|-.|+-.|.+.|..|..+-.|=|
T Consensus 27 l~VgId-G~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf 65 (227)
T PRK06696 27 LRVAID-GITASGKTTFANELAEEIKKRGRPVIRASIDDF 65 (227)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 899977-899878799999999999746994899715443
No 138
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.028 Score=35.14 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=30.4
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 02446665425789999898723577506988224
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+.+|+-|||||-+++-+|..|.+.|.+|..+-+-
T Consensus 108 l~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 89989999879999999999999839849998859
No 139
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.81 E-value=0.028 Score=35.20 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=30.8
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 102446665425789999898723-5775069882246
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
+.|..|.-|+||||++.|+|+.+| +.|++|+++=...
T Consensus 15 L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm 52 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89999689999999999999999997799599993335
No 140
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=94.80 E-value=0.051 Score=33.45 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=33.5
Q ss_pred CEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 58997455644421000000-022340267421443113456667776400122114455442
Q gi|254780831|r 204 DFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 204 D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
-+-+|||| |-.|-.-.+.. ....|++++|.--..--....++...++++.++|++ +++|.
T Consensus 68 ~in~iDtP-Gh~dF~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~i-vviNK 128 (179)
T cd01890 68 LLNLIDTP-GHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII-PVINK 128 (179)
T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 89999899-864517789889975442789986477873748999999987699889-99865
No 141
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=94.80 E-value=0.079 Score=32.17 Aligned_cols=44 Identities=27% Similarity=0.500 Sum_probs=36.8
Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 2010244-66654257899998987235775069882246787653
Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIP 140 (341)
Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~ 140 (341)
.||.|-+ .=||+|||-++.-||-.|.++|++++++==- ||.+..
T Consensus 50 pVI~VGNitvGGtGKTP~v~~la~~l~~~g~~~~IlSRG-Yg~~~~ 94 (334)
T PRK00652 50 PVISVGNLTVGGNGKTPVVIWLAEQLQARGVKVGVVSRG-YGGKSK 94 (334)
T ss_pred CEEEEECEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCC
T ss_conf 899990888788777999999999999769936787346-676567
No 142
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.79 E-value=0.04 Score=34.16 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=35.8
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCC--EEEEEECCCCC
Q ss_conf 34654201024466654257899998987235775--06988224678
Q gi|254780831|r 91 NLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGK--NVAILDADVYG 136 (341)
Q Consensus 91 ~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~--~V~liDaDi~~ 136 (341)
.++.+.+|+|+ |-.|.||||+|--|+..|.+.+. .+.++-.|=|.
T Consensus 30 ~~~rR~lIgIa-G~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH 76 (230)
T PRK09270 30 EPQRRTVVGIA-GPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH 76 (230)
T ss_pred CCCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 99971899998-999889999999999998623799857997365334
No 143
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.043 Score=33.93 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=55.7
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC----C------CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 542010244666542578999989872357----7------506988224678765310002456311233445766322
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK----G------KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENY 163 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~----G------~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~ 163 (341)
++-+..+.-|-||+||||++.-|.++|+.- | .+|+.+-+..+-+++=.=|. ..-..-.+.|....
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~-----~v~a~mgLsPadvr 161 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE-----PVRARMGLSPADVR 161 (402)
T ss_pred HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH-----HHHHHCCCCHHHHH
T ss_conf 5170589844886237689999999998647774533558880799982268688999999-----99987099857632
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC
Q ss_conf 3032233343552210001342024789998675213777589974556--4442
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPP--GTGD 216 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~pp--G~gd 216 (341)
++.+....--.++... ...+.++.|..+...-.+|++|||+=. ++|+
T Consensus 162 n~dltd~~Gaa~~~d~------l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~ 210 (402)
T COG3598 162 NMDLTDVSGAADESDV------LSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGK 210 (402)
T ss_pred HEECCCCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC
T ss_conf 2000024567872001------058999999999987478749973445422774
No 144
>PRK06749 replicative DNA helicase; Provisional
Probab=94.66 E-value=0.1 Score=31.41 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=33.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
..|.++ |.-|+|||+++.|+|...++.|++|+++-+..
T Consensus 187 ~Livia-aRPsmGKTa~alnia~~~a~~g~~v~~fSlEM 224 (428)
T PRK06749 187 DFVVLG-ARPSMGKTAFALNVGLHAAKSGAAVGLFSLEM 224 (428)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 689996-27989768999999999996499279983789
No 145
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.66 E-value=0.03 Score=34.93 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=31.3
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 102446665425789999898723-5775069882246
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
+.|..|.-|+|||+++.|+|+.++ +.|++|+.+....
T Consensus 21 l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm 58 (186)
T pfam03796 21 LIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEM 58 (186)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 79999679998799999999999997099668754755
No 146
>KOG0635 consensus
Probab=94.61 E-value=0.07 Score=32.51 Aligned_cols=37 Identities=38% Similarity=0.503 Sum_probs=33.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
-+|-++ |--|-||||++..|..+|-++|+-.-.+|.|
T Consensus 32 cviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGD 68 (207)
T KOG0635 32 CVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGD 68 (207)
T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 689974-2577880259999999998658658985485
No 147
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=94.57 E-value=0.11 Score=31.22 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEE------ECCC-CCCCCCCEECCC
Q ss_conf 6665425789999898723577506988------2246-787653100024
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAIL------DADV-YGPSIPKLLKIS 146 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~li------DaDi-~~ps~~~~lg~~ 146 (341)
|.||+|||++---+...|...|+.|++. =..| .|-.+|..||+.
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~~~v~vtA~TGiAA~~i~gG~TiHs~~gi~ 51 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRGKIVLNVASSGIAALLLPGGRTAHSRFGIP 51 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEHHHCCCCC
T ss_conf 979887999999999999768988999896899985169987398526989
No 148
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.52 E-value=0.057 Score=33.13 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 201024466654257899998987235775069882246787
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
-||+|. |.-|.||||+...|--.|.++|+||+.+--|-++.
T Consensus 3 Pii~iv-G~s~SGKTTLi~kli~~l~~~G~rV~~IKH~~H~f 43 (170)
T PRK10751 3 PLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 43 (170)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 779999-46999999999999999998798499994577788
No 149
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.45 E-value=0.034 Score=34.60 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.+|=++ |--|-||||+|-.|...|.+.|+++.++|.|-
T Consensus 25 ~viWlT-GLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~ 62 (198)
T PRK03846 25 VVLWFT-GLSGSGKSTVAGALEEALHELGVHTYLLDGDN 62 (198)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 699987-99999889999999999997599759977799
No 150
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.42 E-value=0.031 Score=34.86 Aligned_cols=41 Identities=32% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCE
Q ss_conf 201024466654257899998987235775069882246787--65310
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP--SIPKL 142 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p--s~~~~ 142 (341)
+||.|+ |=-|.||||++.-||-.|.-. .+|+|-|.| |+.+|
T Consensus 9 ~iiVVM-GVsGsGKSTig~~LA~~l~~~-----fiegDdfHp~~Ni~KM 51 (177)
T PRK11545 9 HIYVLM-GVSGSGKSAVASAVAHQLHAA-----FLDGDFLHPRCNIEKM 51 (177)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHCCC-----EECCCCCCCHHHHHHH
T ss_conf 599998-479899999999999981998-----5536555899999986
No 151
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=94.31 E-value=0.024 Score=35.65 Aligned_cols=49 Identities=33% Similarity=0.525 Sum_probs=39.5
Q ss_pred CCEEC---CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC
Q ss_conf 20102---44666542578999989872357750698822467876531000245
Q gi|254780831|r 96 KFVAV---ASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147 (341)
Q Consensus 96 ~iiav---~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~ 147 (341)
|.|.| +----|.||||+++.|+-+|++.|+++.+ -++-||+.-.||+.+
T Consensus 53 KlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~---alRePSlGP~fGiKG 104 (554)
T COG2759 53 KLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAII---ALREPSLGPVFGIKG 104 (554)
T ss_pred EEEEEEECCCCCCCCCCCEEEEHHHHHHHHCCCHHEE---EECCCCCCCCCCCCC
T ss_conf 0899982578888888612542489999861860058---860577687314456
No 152
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.28 E-value=0.051 Score=33.46 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=35.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE
Q ss_conf 20102446665425789999898723577506988224678765310
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKL 142 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~ 142 (341)
.-|.-.+|--|.||||++..+|.+.++.|++|+.+|+. +.+...+
T Consensus 23 G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE--~~~~er~ 67 (224)
T PRK09361 23 GTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTE--GLSPERF 67 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCHHHH
T ss_conf 87999989999859999999999999749909996787--6788999
No 153
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=94.25 E-value=0.043 Score=33.91 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=32.3
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0102446665425789999898723577506988224
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
||+|+ |.=+.||||+-.-|.-.|.++||||+.|==+
T Consensus 1 v~~i~-G~k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ 36 (165)
T TIGR00176 1 VLQIV-GYKNSGKTTLIERLVKALKARGYRVATIKHD 36 (165)
T ss_pred CEEEE-EECCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 93789-6258867899999999997079950898608
No 154
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.24 E-value=0.059 Score=33.04 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=32.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|+-+ +|--|+||||++..+|...++.|.+|+.+|.-
T Consensus 20 ~it~i-~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE 56 (218)
T cd01394 20 TVTQV-YGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 79999-89999849999999999986369869999665
No 155
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.24 E-value=0.045 Score=33.83 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=34.6
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 542010244666542578999989872357750698822
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
-+-+|+|+.-.-|+|||++|.-.|.-|.++||||+.+-.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 485599997236655678889999999866982379955
No 156
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.07 E-value=0.064 Score=32.76 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=36.4
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCE--EEEEECCCCC
Q ss_conf 6542010244666542578999989872357750--6988224678
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKN--VAILDADVYG 136 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~--V~liDaDi~~ 136 (341)
...-||+++ |-=||||||++-+|+.+|++.+.+ |-++-.|-|.
T Consensus 80 ~~pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 80 QRPFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 888799960-576655778999999999638898733787145454
No 157
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.036 Score=34.44 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=52.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999668784789999999999986067634235503222343332223465420102446665425789999898723
Q gi|254780831|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 42 ~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
.+++.+.+|+-|...-+...+++ +.++-+.+++.-+..+..+. ....++|+|+ |--||||++.-|+..|.
T Consensus 69 ~~d~vv~SPGi~~~~p~~~~a~~--~~i~i~~eiel~~~~~~~~~-----~~~~k~IaVT---GTNGKTTTt~ll~~iL~ 138 (468)
T PRK04690 69 AFEVVVKSPGISPYRPEALAAAA--QGTPFIGGTALWFAEHAQPD-----GSVPGAVCVT---GTKGKSTTTALLAHLLR 138 (468)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH--CCCCEEEHHHHHHHHHHCCC-----CCCCCEEEEE---CCCCHHHHHHHHHHHHH
T ss_conf 48899989957986899999998--79948868999998753112-----5678789996---99858999999999998
Q ss_pred CCCCEEEEEECCCCCCC
Q ss_conf 57750698822467876
Q gi|254780831|r 122 NKGKNVAILDADVYGPS 138 (341)
Q Consensus 122 ~~G~~V~liDaDi~~ps 138 (341)
..|+++.+ -.+|.-|-
T Consensus 139 ~~g~~~~~-~GNIG~P~ 154 (468)
T PRK04690 139 AAGHRTAL-VGNIGQPL 154 (468)
T ss_pred HCCCCEEE-ECCCCHHH
T ss_conf 57998289-86776446
No 158
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.98 E-value=0.056 Score=33.18 Aligned_cols=38 Identities=34% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
-+|=++ |=-|-||||+|--|...|.+.|++|.++|.|-
T Consensus 8 ~viW~T-GLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~ 45 (176)
T PRK05541 8 YVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 799978-99999899999999999997599779988689
No 159
>PRK06526 transposase; Provisional
Probab=93.89 E-value=0.053 Score=33.32 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 420102446665425789999898723577506988224
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|+|. -|+-|+|||.++..||...-++|++|..+-++
T Consensus 99 ~Nvil--~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~ 135 (254)
T PRK06526 99 ENVVF--LGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CCEEE--ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 87899--89999868999999999999869967998779
No 160
>KOG1534 consensus
Probab=93.79 E-value=0.09 Score=31.80 Aligned_cols=90 Identities=23% Similarity=0.425 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 46665425789999898723577506988224678--7653100024563112334457663223032233343552210
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG--PSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDENVA 179 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~--ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~~~ 179 (341)
-|--|-||||...++---....|+++-++.+|... .+-+....+.+-+...+ .+. .+ -.+++.+
T Consensus 9 ~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdD--VmE-----dl-------~~GPNGg 74 (273)
T KOG1534 9 MGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDD--VME-----DL-------DLGPNGG 74 (273)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCHHHHCCHHH--HHH-----HH-------CCCCCCC
T ss_conf 746788843078999999986285458862687888608962002887521888--888-----86-------3499865
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-----CC--CCEEEEECCC
Q ss_conf 001342024789998675213-----77--7589974556
Q gi|254780831|r 180 MIWRGPMVQSAIMHMLHNVVW-----GQ--LDFLLIDMPP 212 (341)
Q Consensus 180 ~~~rg~~~~~~l~~~l~~~~w-----~~--~D~liiD~pp 212 (341)
+ --.++.++.+..| |+ -||+|+|||-
T Consensus 75 L-------v~cmEyl~~NldwL~~~~Gd~eddylifDcPG 107 (273)
T KOG1534 75 L-------VYCMEYLLENLDWLEEEIGDVEDDYLIFDCPG 107 (273)
T ss_pred C-------HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 2-------03899999778887754067567779984798
No 161
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.78 E-value=0.063 Score=32.83 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 466654257899998987235775069882246
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.|--|.||||+|-.|.-.|.+.|+++.++|.|-
T Consensus 5 tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~ 37 (149)
T cd02027 5 TGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 799999999999999999998699759977488
No 162
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.062 Score=32.88 Aligned_cols=38 Identities=37% Similarity=0.381 Sum_probs=33.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 01024466654257899998987235775069882246
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
++.-..|=-|-||||++.-|.-.|.++|+.|-++|.|-
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 59996468888787999999999997597589855746
No 163
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.71 E-value=0.088 Score=31.87 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=34.0
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 0102446665425789999898723577506988224678
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
||+|+ |--|-||||+|-.|+-.|...|.++.++-.|=|-
T Consensus 1 iIgIa-G~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy 39 (179)
T cd02028 1 VVGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98998-9897789999999999984648853999546664
No 164
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.62 Score=26.22 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=92.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
+.+.|..--=-|||-|++.-|.-++...|.++..+-.+-.| .|. ..+|+.+=+ ++
T Consensus 149 ~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg----il~-----------------~~~gvvvda---v~- 203 (339)
T COG3367 149 KVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG----ILI-----------------ADDGVVVDA---VV- 203 (339)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEE----EEE-----------------ECCCEEECC---HH-
T ss_conf 68999335632104388999999999709863157607604----688-----------------527467530---36-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEE-----CCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH-------H
Q ss_conf 22100013420247899986752137-77589974-----55644421000000022340267421443113-------4
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWG-QLDFLLID-----MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL-------I 242 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~-~~D~liiD-----~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~-------~ 242 (341)
.| .++.++++.-.. .|. +.||++|- +.|+.| +.+.+.-...-|.++++-.|..... .
T Consensus 204 ~D--------faAGave~~v~~-~~e~~~Dii~VEGQgsl~HP~y~-vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip 273 (339)
T COG3367 204 MD--------FAAGAVESAVYE-AEEKNPDIIFVEGQGSLTHPAYG-VTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIP 273 (339)
T ss_pred HH--------HHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCCCCC-CCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 88--------898888888887-65228987999065343477765-214330477897699974699752367987689
Q ss_pred HHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 566677764001-22114455442024587788665124776589999984797898827998999
Q gi|254780831|r 243 DVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341)
Q Consensus 243 da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341)
+....+.+.+-+ +.++.|+..|-- +.++. + -+....++..++++|...-+-+..++.
T Consensus 274 ~leevi~l~e~l~~a~Vvgi~lNtr-----~~dE~-~--are~~a~l~~efglP~~Dp~~~~~d~~ 331 (339)
T COG3367 274 PLEEVIALYELLSNAKVVGIALNTR-----NLDEE-E--ARELCAKLEAEFGLPVTDPLRFGEDVL 331 (339)
T ss_pred CHHHHHHHHHHCCCCCEEEEEECCC-----CCCHH-H--HHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 8899889998716785799992444-----46868-8--999999986403974226300214899
No 165
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.65 E-value=0.065 Score=32.73 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=31.2
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 02446665425789999898723577506988224
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+.+|.-|+|||.+|+-+|-+|-+.|+.|..+-+-
T Consensus 99 LlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~ 133 (242)
T PRK07952 99 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 133 (242)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 79978999978999999999999879949997799
No 166
>PRK09183 transposase/IS protein; Provisional
Probab=93.63 E-value=0.064 Score=32.76 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|+|. -|.-|||||-+|+.||....+.|++|..+.+.
T Consensus 103 Nvil--~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~ 138 (258)
T PRK09183 103 NIVL--LGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 138 (258)
T ss_pred CEEE--ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 6799--89999868999999999999879939997899
No 167
>PRK08181 transposase; Validated
Probab=93.51 E-value=0.069 Score=32.56 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 420102446665425789999898723577506988224
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|+|. -|.-|||||-+|+.||....+.|++|..+.++
T Consensus 107 ~Nvil--~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~ 143 (269)
T PRK08181 107 ANLLL--FGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred CEEEE--ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 70899--89999878899999999999879939997899
No 168
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.46 E-value=0.21 Score=29.32 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.++ |.-|+|||+++.|+|...| +.|+.|+++-+..
T Consensus 195 ~LiIia-ARPsmGKTafalnia~n~A~~~g~~Vl~fSLEM 233 (421)
T TIGR03600 195 DLIVIG-ARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred CEEEEE-EECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 689998-546787459999999999986698389992579
No 169
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.39 E-value=0.11 Score=31.33 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=32.1
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 102446665425789999898723577506988224678
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
+.|. |--|+||||++.++|...+..|.+|+.+|..-..
T Consensus 2 ~li~-g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~ 39 (165)
T cd01120 2 ILVF-GPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf 8999-8999989999999999987639979999866644
No 170
>PRK08506 replicative DNA helicase; Provisional
Probab=93.29 E-value=0.091 Score=31.76 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=33.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...++.|+.|+++-+..
T Consensus 194 dLiIIA-ARPsmGKTAfAlniA~~~a~~~~~V~~FSLEM 231 (473)
T PRK08506 194 DLIIIA-ARPSMGKTTLVLNMVLKALNQGKGVAFFSLEM 231 (473)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 279995-07998678999999999996599658982247
No 171
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.25 E-value=0.075 Score=32.31 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCC
Q ss_conf 201024466654257899998987235-775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKN-KGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~-~G~~V~liDaDi 134 (341)
.++.|+ |.-|+|||+++.|+|+.++. .|++|+++-+-.
T Consensus 31 eL~via-arpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm 69 (271)
T cd01122 31 ELIILT-AGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 089999-689986999999999999997699089997049
No 172
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=93.23 E-value=0.071 Score=32.48 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=31.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 01024466654257899998987235775069882246
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
||+|+ |-.|-||||+|-.|+-.|.+.|.++..++.|-
T Consensus 1 iIgIa-G~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~ 37 (196)
T pfam00485 1 IIGVA-GSSGAGKTTVARTFVSIFGREGVPAAGIEGDS 37 (196)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 98998-99857199999999999660587764124317
No 173
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=93.21 E-value=0.073 Score=32.39 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=34.6
Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 2010244-6665425789999898723577506988224678765
Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
.||.|-+ .=||+|||-++.-||-.|.++|++|+++==- ||...
T Consensus 36 pVI~VGNit~GGtGKTP~v~~l~~~l~~~g~~~~ilSRG-Yg~~~ 79 (318)
T pfam02606 36 PVIVVGNITVGGTGKTPLVIALAELLRARGLRPGVLSRG-YGGKS 79 (318)
T ss_pred CEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCCC
T ss_conf 999998984588785899999999999769944783267-67657
No 174
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.19 E-value=0.13 Score=30.71 Aligned_cols=36 Identities=33% Similarity=0.557 Sum_probs=30.5
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 010244666542578999989872357750698822467
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
||+|+ |-.|.||||+|-.|+-.|. +.+|.++..|=|
T Consensus 1 iIgI~-G~sgsGKTT~a~~L~~~l~--~~~v~~i~~D~y 36 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQLG--NPKVVIISQDSY 36 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHC--CCCEEEEECCCC
T ss_conf 98988-9998859999999999809--998589978888
No 175
>KOG3381 consensus
Probab=93.17 E-value=0.13 Score=30.78 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE--C-------CEEEEEEEECCCCHHHHHHHHHHHHHHH-HCCCCCC
Q ss_conf 0289999987203384797643635876556988--9-------9899999966878478999999999998-6067634
Q gi|254780831|r 4 ILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV--H-------NTVYLSITVPHTIAHQLQSLRSNAQQII-QNIPTVK 73 (341)
Q Consensus 4 it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~--~-------~~V~i~l~lt~~~cp~~~~l~~~i~~~l-~~i~gv~ 73 (341)
...+++.+.+++|.|||-+-.+-+|+.|+.-.|+ + ..|+|.++.|-|-|.++-.|---|+-+| ..+|.--
T Consensus 34 ~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rf 113 (161)
T KOG3381 34 EDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLIGLCIRVKLLRSLPPRF 113 (161)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCEEECCEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHEEEEEEEECCCCCE
T ss_conf 36789999986168988886588706242205676457778851389999536887522776642202665530488742
Q ss_pred CEEEECCCCC
Q ss_conf 2355032223
Q gi|254780831|r 74 NAVVTLTENK 83 (341)
Q Consensus 74 ~v~V~lt~~~ 83 (341)
+++|.++...
T Consensus 114 kvdV~I~~Gt 123 (161)
T KOG3381 114 KVDVYIKPGT 123 (161)
T ss_pred EEEEEECCCC
T ss_conf 6899975787
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.10 E-value=0.092 Score=31.73 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 446665425789999898723577506988224
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+|.-|||||-+++-+|-.|+++|+.|.++-..
T Consensus 162 l~G~~G~GKTyL~~aian~La~~g~~v~~v~~p 194 (306)
T PRK08939 162 LYGDFGVGKTYLLAAIANELAKKGVSSTLVHFP 194 (306)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 989999989999999999999869929998759
No 177
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=93.09 E-value=0.095 Score=31.64 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 2446665425789999898723577506988224
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+..|.-|+|||-++..+|.++.++|++|..+-+.
T Consensus 51 ll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~ 84 (178)
T pfam01695 51 LLLGPPGVGKTHLACALGHQACRAGYSVLFTRTP 84 (178)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECH
T ss_conf 9989999878999999999999869859999616
No 178
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.09 E-value=0.085 Score=31.98 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=28.0
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 1024466654257899998987235775069882
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
|.| +|--||||||+..-+|-.|.+.|++|+=+=
T Consensus 8 i~I-TG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 8 IFI-TGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 998-679984589999999999985596651398
No 179
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=93.00 E-value=0.049 Score=33.56 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCCCCCC-CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCC
Q ss_conf 2234654-201024466654257899998987235775069882246787653100024
Q gi|254780831|r 89 RNNLNVK-KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKIS 146 (341)
Q Consensus 89 ~~~~~~~-~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~ 146 (341)
..++..+ ..|.|+ ||||.||||+.=+| -|| ++++++|- |--.|-|.+
T Consensus 6 ~~i~~~~~~~~lIY-G~~G~GKTS~~K~l------~Gk-tL~l~~D~---SSkVL~G~~ 53 (229)
T TIGR01618 6 EEIKRSEYFRYLIY-GKPGLGKTSTIKYL------PGK-TLVLSLDK---SSKVLAGDE 53 (229)
T ss_pred CCCCCCCCCEEEEE-CCCCCCCCCEEEEC------CCC-EEEEECCC---CCCCCCCCC
T ss_conf 46656766368887-58988723056645------887-89883678---644346899
No 180
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=92.92 E-value=0.11 Score=31.31 Aligned_cols=38 Identities=34% Similarity=0.376 Sum_probs=32.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 010244666542578999989872357750698822467
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
+|=++ |--|-||||+|--|...|.+.|+.|.++|.|-.
T Consensus 4 viW~T-GLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~ 41 (157)
T pfam01583 4 TVWFT-GLSGSGKSTIANALERKLFAQGISVYVLDGDNV 41 (157)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 99988-989999999999999999975997799768877
No 181
>PRK05380 pyrG CTP synthetase; Validated
Probab=92.91 E-value=0.81 Score=25.45 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=31.0
Q ss_pred CCEECCCC-CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446-665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASG-KGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~Sg-KGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
|.|-|+.| =-|.||-.+|+.|+.-|..+|++|..+-.|-|-
T Consensus 3 KyIfVTGGVvS~lGKGi~aaSig~lLk~~G~~V~~~K~DPYl 44 (534)
T PRK05380 3 KYIFVTGGVVSSLGKGITAASLGALLKARGLKVTIQKLDPYL 44 (534)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 099996983015740899999999999789658898414652
No 182
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.90 E-value=0.1 Score=31.45 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=31.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+...+|--|+||||+..-+|..|++.|++|+.+-+-
T Consensus 84 vvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGE 119 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 799825998868899999999998639938998245
No 183
>PRK13748 putative mercuric reductase; Provisional
Probab=92.77 E-value=0.29 Score=28.45 Aligned_cols=77 Identities=14% Similarity=0.280 Sum_probs=49.7
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-----------------------------CC--------
Q ss_conf 66878478999999999998606763423550322234333-----------------------------22--------
Q gi|254780831|r 47 VPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQ-----------------------------QR-------- 89 (341)
Q Consensus 47 lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~-----------------------------~~-------- 89 (341)
+|+..| ...++++|.++|||.+++|.+....+.-. ..
T Consensus 9 mtc~~c------~~~v~~al~~~~gv~~~~v~~~~~~a~~~~~~~~~~~~~~~av~~~gy~~~~~~~~~~~~~~~~~~~~ 82 (561)
T PRK13748 9 MTCDSC------AAHVKEALEKVPGVQSADVSYPKGTAQLAIEVGTSPDALTAAVAGLGYRATLADAPLTDNRGGLLDKM 82 (561)
T ss_pred CCCHHH------HHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 026278------89999998538893168876147658999689999899999999828873114467533455544432
Q ss_pred -----------CCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf -----------23465420102446665425789999898723577506988224678
Q gi|254780831|r 90 -----------NNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 90 -----------~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
...+--.++.|-||-||. .-|...++.|+||+|++.+-.|
T Consensus 83 ~~~~~~~~~~~~~~~~yDliVIG~GpaG~-------~AA~~Aa~~G~kValVE~~~lG 133 (561)
T PRK13748 83 RGWLGGADKHSGNEGPLHVAVIGSGGAAM-------AAALKAVEQGARVTLIERGTIG 133 (561)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCHHHH-------HHHHHHHHCCCEEEEEECCCCC
T ss_conf 22345554456789987689989588999-------9999999789979999479968
No 184
>pfam00931 NB-ARC NB-ARC domain.
Probab=92.71 E-value=0.066 Score=32.71 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=18.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHH
Q ss_conf 2010244666542578999989
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIA 117 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa 117 (341)
+||+|. |-||+||||+|-.+-
T Consensus 20 ~vI~I~-G~gGiGKTtLA~~v~ 40 (285)
T pfam00931 20 GVVGIV-GMGGVGKTTLAKQIY 40 (285)
T ss_pred EEEEEE-CCCCCCHHHHHHHHH
T ss_conf 399988-999563999999997
No 185
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.69 E-value=0.1 Score=31.35 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=32.3
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 01024466654257899998987235775069882246
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
+|=.+ |--|-||||+|-.|...|.+.|+.+.++|.|-
T Consensus 6 viWlt-GlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~ 42 (175)
T PRK00889 6 TVWFT-GLSGAGKTTISHALAEKLRARGYPVEVLDGDI 42 (175)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 99988-98999999999999999998699679977688
No 186
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.69 E-value=0.29 Score=28.39 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=33.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.++.|. |--|.|||+++..+++...+.|.+|..+-...
T Consensus 25 s~~li~-G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~ 62 (230)
T PRK08533 25 SIILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSSQL 62 (230)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 489998-68998789999999999987898699999438
No 187
>PRK07004 replicative DNA helicase; Provisional
Probab=92.66 E-value=0.13 Score=30.84 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=32.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.++ |.-|+|||+++.|+|...| +.|+.|+++-+..
T Consensus 214 dLiIIA-ARPsmGKTafAlniA~n~A~~~g~~V~~FSLEM 252 (460)
T PRK07004 214 ELIIVA-GRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEM 252 (460)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 579997-368764269999999999872588669984779
No 188
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=92.51 E-value=0.35 Score=27.87 Aligned_cols=42 Identities=31% Similarity=0.572 Sum_probs=35.2
Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 2010244-666542578999989872357750698822467876
Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
-+|.|-. -=||.|||-+..-||-+|.++|.+++++-=. ||.+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG-Ygg~ 90 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRG-YGGK 90 (336)
T ss_pred CEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCC
T ss_conf 789985577778996889999999998669736798057-6888
No 189
>PRK05595 replicative DNA helicase; Provisional
Probab=92.36 E-value=0.15 Score=30.22 Aligned_cols=38 Identities=29% Similarity=0.486 Sum_probs=32.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...| +.|++|+++-+..
T Consensus 202 dLiiia-aRP~mGKTa~alnia~~~a~~~g~~V~~fSlEM 240 (444)
T PRK05595 202 DMILIA-ARPSMGKTTFALNIAEYAALREGKSVVIFSLEM 240 (444)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 779998-579898079999999999986699379995889
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.28 E-value=0.17 Score=29.94 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=32.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
+.+.+. |.-|+||||++..+|..+...++.+..++++.
T Consensus 3 ~~ill~-G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~ 40 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEE-CCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf 789999-99970299999999987266899689987599
No 191
>PRK09165 replicative DNA helicase; Provisional
Probab=92.26 E-value=0.57 Score=26.46 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCC---------------CCCEEEEEECCC
Q ss_conf 201024466654257899998987235---------------775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKN---------------KGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~---------------~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|.-.|+ .|+.|+++-+..
T Consensus 206 dLiIIA-ARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEM 258 (484)
T PRK09165 206 DLIILA-GRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEM 258 (484)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 379996-07999778999999999998741022223321136898489994779
No 192
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=92.20 E-value=0.99 Score=24.86 Aligned_cols=107 Identities=19% Similarity=0.350 Sum_probs=60.7
Q ss_pred CEECCCC-CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECC------
Q ss_conf 0102446-665425789999898723577506988224678765310002456311233445766322303223------
Q gi|254780831|r 97 FVAVASG-KGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMS------ 169 (341)
Q Consensus 97 iiav~Sg-KGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s------ 169 (341)
.|.|+.| =-|.||-.+|+.++.-|..+|++|..+-.|-|- ++++ ..+.|.+.+.+.+..
T Consensus 3 yi~vtGGV~SglGKGi~~aSig~ll~~~g~~v~~~K~DpYl-------NvD~-------Gtm~P~eHGEVfV~~DG~EtD 68 (275)
T pfam06418 3 YIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYL-------NVDP-------GTMSPYQHGEVFVTDDGAETD 68 (275)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCE-------ECCC-------CCCCCCCCCCEEECCCCCCCC
T ss_conf 99995985025631899999999999679636787415631-------2388-------877833156078737874014
Q ss_pred ---------------------CCC----CCCCCCCCCCCC------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf ---------------------334----355221000134------202478999867521377758997455644421
Q gi|254780831|r 170 ---------------------MAS----LVDENVAMIWRG------PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA 217 (341)
Q Consensus 170 ---------------------~g~----l~~~~~~~~~rg------~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~ 217 (341)
.|- ...+.+.--+-| |.+...+.+.++.+.-.+.|++|+-..--.||+
T Consensus 69 lDlG~YERFl~~~l~~~~niTtGkiy~~Vi~kER~G~YLGkTVQvIPHiTdeIk~~I~~~a~~~~Di~ivEiGGTVGDI 147 (275)
T pfam06418 69 LDLGHYERFLDINLTKDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAAKGADVVIVEIGGTVGDI 147 (275)
T ss_pred CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEECC
T ss_conf 7675234314777566666340188999998875567589715877885699999999855678978999757601001
No 193
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=92.20 E-value=0.13 Score=30.76 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=26.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 2010244666542578999989872357-7506988
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAIL 130 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~li 130 (341)
+=+|+. .-=||||||+-.-.|+-||.+ |+|+.+|
T Consensus 100 ~SFai~-APTGVGKttFG~~mslflA~kKGkR~y~i 134 (1843)
T TIGR01054 100 DSFAIV-APTGVGKTTFGLVMSLFLAKKKGKRSYII 134 (1843)
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 964898-05887677999999999865429878999
No 194
>PRK05748 replicative DNA helicase; Provisional
Probab=92.18 E-value=0.43 Score=27.26 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=31.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...| +.|+.|+++-+..
T Consensus 204 ~Livia-aRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM 242 (448)
T PRK05748 204 DLIIVA-ARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM 242 (448)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 379998-479987689999999999985698089981778
No 195
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.02 E-value=0.15 Score=30.41 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 446665425789999898723577506988224
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+|--|+|||+++...++..++.|.+|+.+-++
T Consensus 4 i~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~e 36 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 876899999999999999998769978999950
No 196
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.79 E-value=0.072 Score=32.43 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCCC
Q ss_conf 66654257899998987235775069882246-----787653100024563
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGKV 149 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~~ 149 (341)
|==|.||||+.--||-+|.-. .+|.|- +|.|++.+|-.++..
T Consensus 9 G~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie~~~g~sI~eIF~~~GE~ 55 (172)
T COG0703 9 GFMGAGKSTIGRALAKALNLP-----FIDTDQEIEKRTGMSIAEIFEEEGEE 55 (172)
T ss_pred CCCCCCHHHHHHHHHHHCCCC-----CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 179997768999999981998-----02246999999796999999998289
No 197
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=91.77 E-value=0.13 Score=30.66 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=91.8
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCE------ECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 01024466654257899998987235775069882246-----78765310------00245631123344576632230
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKL------LKISGKVEISDKKFLKPKENYGI 165 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~------lg~~~~~~~~~~~~i~p~~~~gi 165 (341)
+|.++ |-=|.||||++.-|+ ++|.. ++|+|. ..|.-+.+ ||-+ ....++.+.-. -+
T Consensus 3 ~IGLT-GGIgsGKStv~~~l~----~~G~~--viDaD~iar~v~~pg~~~~~~iv~~FG~~---il~~dG~ldR~---~L 69 (394)
T PRK03333 3 RIGLT-GGIGAGKSTVSATLA----QLGAV--VVDGDVLAREVVEPGTEGLAALVEAFGDD---ILLADGALDRP---AL 69 (394)
T ss_pred EEEEE-CCCCCCHHHHHHHHH----HCCCE--EEEHHHHHHHHHCCCHHHHHHHHHHHCHH---HHCCCCCCCHH---HH
T ss_conf 99830-675557999999999----87994--99857999999439868999999985989---63889735699---99
Q ss_pred EECCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 3223334355221000134----202478999867521377758997455644421000000022340267421443113
Q gi|254780831|r 166 KIMSMASLVDENVAMIWRG----PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 166 ~~~s~g~l~~~~~~~~~rg----~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
-.+ -|-++. ...+-. |.+.....+++... ..-.+++.|.|-=+ +. .. .-..+.+++|..|..+-+
T Consensus 70 --~~~-vF~d~~-~~~~Ln~I~HP~Vr~~~~~~~~~~--~~~~vvv~DiPLL~-E~--~~--~~~~d~VvvV~~p~e~qv 138 (394)
T PRK03333 70 --AAK-AFADDE-ARAVLNGIVHPLVAARRAELIAAA--PEDAVVVEDIPLLV-ES--GM--APLFPLVVVVHADVEVRV 138 (394)
T ss_pred --HHH-HHCCHH-HHHHHHHHHCHHHHHHHHHHHHHC--CCCCEEEEEECHHE-EC--CC--CCCCCEEEEEECCHHHHH
T ss_conf --988-838999-999998615899999999999855--79977999400113-22--63--036997999989889999
Q ss_pred HHHHH--HH-------HHHHCC----CCCHHH-HHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC-EEEECCCCHHH
Q ss_conf 45666--77-------764001----221144-55442024587788665124776589999984797-89882799899
Q gi|254780831|r 242 IDVKR--AI-------SMYQKM----NIPIIG-MIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP-FLESVPFDMDV 306 (341)
Q Consensus 242 ~da~r--~~-------~~~~~~----~~~i~G-iV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~-~lg~IP~d~~i 306 (341)
.=..+ .+ .+..|. +..+.- +|.| +|....+.++..-= .=-.+||..++
T Consensus 139 ~RL~~r~gls~~~A~aRIaaQ~~~e~r~a~AD~VIDN-----------------sGt~~~l~~~v~~lW~~rl~p~~~n~ 201 (394)
T PRK03333 139 RRLVEQRGMAEADARARIAAQASDEQRRAAADVWLDN-----------------SGTPEELVEAVRDLWADRLLPFAHNL 201 (394)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEEC-----------------CCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9998637989999999999479999999859999969-----------------89999999999999997425365676
Q ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 975028821799779998999999999999998
Q gi|254780831|r 307 RVLSDLGIPIVVHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 307 ~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
+.......|-.+-.|+......|.+|+.+|..-
T Consensus 202 ~~~~~~~~~~~~~~~dp~Wpaq~~r~~~Rl~~a 234 (394)
T PRK03333 202 RARQPARAPPRLVPADPEWPAQAQRLVARLKRA 234 (394)
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 418978999857899996289999999999985
No 198
>PRK07263 consensus
Probab=91.57 E-value=0.54 Score=26.60 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=32.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |+-|+|||+++.|+|.-.| +.|++|+++-...
T Consensus 204 dLivia-aRPsmGKTa~alnia~~iA~~~~~~V~~fSlEM 242 (453)
T PRK07263 204 QLIILA-ARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEM 242 (453)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 689997-278884789999999999985598289992469
No 199
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.54 E-value=0.28 Score=28.51 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=35.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
+|++|+ |.=+.||||+..-|.-.|.++|+||+.+--+-++
T Consensus 3 ~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 3 KILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 289999-6279973428999999997579379999865877
No 200
>PRK08082 consensus
Probab=91.37 E-value=0.22 Score=29.25 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=32.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |+-|+|||+++.|+|...| +.|++|+++-...
T Consensus 204 ~Livia-aRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM 242 (453)
T PRK08082 204 DLIIVA-ARPSVGKTAFALNIAQNVATKTDENVAIFSLEM 242 (453)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 579998-678875789999999999985599489973138
No 201
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=91.35 E-value=0.16 Score=30.18 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 420102446665425789999898723577506988224
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
-++|-|| |==||||+|.-++..|.++|+|++||-.=
T Consensus 88 l~viGvT---GTNGKTtt~~li~~~l~~~G~~tgliGT~ 123 (494)
T TIGR01085 88 LKVIGVT---GTNGKTTTTSLIAQLLELLGKKTGLIGTI 123 (494)
T ss_pred EEEEEEE---ECCCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 1689997---12874489999999998679708998654
No 202
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=91.31 E-value=0.23 Score=29.08 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=33.6
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 02446665425789999898723577506988224678
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
.|.+|--+.||||.|..|+-.|.+.|++|.+++-|..+
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d~~~~ 39 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESLG 39 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 79857999968899999999999759938997800126
No 203
>PRK03839 putative kinase; Provisional
Probab=91.26 E-value=0.21 Score=29.31 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=20.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 0102446665425789999898723577506
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNV 127 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V 127 (341)
+|+|+ |--||||||++--||-.| |+++
T Consensus 2 ~I~IT-GTPGtGKTTva~~La~~l---g~~~ 28 (180)
T PRK03839 2 IIAIT-GTPGVGKTTISKLLAEKL---GYEY 28 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH---CCEE
T ss_conf 89997-899999899999999976---9879
No 204
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.26 E-value=0.2 Score=29.47 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=33.5
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 02446665425789999898723577506988224678
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
.|.+|--|.||||.|-.|+-.|.+.|.+|.++..|...
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~~d~~~ 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNIILGTDLIR 39 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf 78967899989999999999999829965996552002
No 205
>PRK05636 replicative DNA helicase; Provisional
Probab=91.18 E-value=0.23 Score=29.08 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=32.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...| +.|++|+++-+..
T Consensus 268 ~LiIiA-ARPsmGKTalAlnia~n~A~~~g~~v~~fSLEM 306 (507)
T PRK05636 268 QMIIVA-ARPGVGKSTIALDFMRSASIKNNKASVIFSLEM 306 (507)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 679997-378786689999999999987699379971569
No 206
>PRK08116 hypothetical protein; Validated
Probab=91.10 E-value=0.22 Score=29.22 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=31.2
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 02446665425789999898723577506988224
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+..|.=|+|||-+++-+|-.|.+.|++|..+.+-
T Consensus 111 Lll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~ 145 (262)
T PRK08116 111 LLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVP 145 (262)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 89989899989999999999999879939998899
No 207
>PRK09401 reverse gyrase; Reviewed
Probab=91.10 E-value=0.21 Score=29.41 Aligned_cols=29 Identities=38% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 66654257899998987235775069882
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
.--|+||||+-.-.|+.||++|+|+.++=
T Consensus 100 APTG~GKTtfgl~~sly~a~kgkks~~i~ 128 (1176)
T PRK09401 100 APTGVGKTTFGLVMALYLAKKGKKSYIIF 128 (1176)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 88998888999999999986598399996
No 208
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=91.05 E-value=0.35 Score=27.88 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=31.5
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCC
Q ss_conf 010244666542578999989872357--750698822467
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVY 135 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~ 135 (341)
||+|+ |--|.||||+|-.|...|.+. +.+|.++-.|=|
T Consensus 1 IIGIa-G~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f 40 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 98978-89987799999999998600269994899978787
No 209
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.98 E-value=0.13 Score=30.69 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=32.4
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 02446665425789999898723577506988224
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+.+|--|+||||+|-+||-+|.+.+.+|.-+-.|
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99826999880178999999999720011213201
No 210
>KOG1533 consensus
Probab=90.96 E-value=0.29 Score=28.45 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 46665425789999898723577506988224678765
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
=|--|-||||-......-|+..|++|.++-.|...-++
T Consensus 8 IGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~ 45 (290)
T KOG1533 8 IGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNL 45 (290)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 76999985311320999999748962799568765678
No 211
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=0.41 Score=27.43 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCEE--EEEEECC-------EEEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 02899999872033847976436358765--5698899-------8999999668784789999999999986-067634
Q gi|254780831|r 4 ILKNQIVDSLKVLSIPGEKNNIVEMQRLS--EIFIVHN-------TVYLSITVPHTIAHQLQSLRSNAQQIIQ-NIPTVK 73 (341)
Q Consensus 4 it~~~I~e~L~~V~DPel~~dIv~lGlI~--~I~I~~~-------~V~i~l~lt~~~cp~~~~l~~~i~~~l~-~i~gv~ 73 (341)
+..++|++.+.++.|||.+.++-.|+.|. +|.+.++ .|.+.++.|-+.|.+...|---|+-.+. .+|.--
T Consensus 54 id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF 133 (181)
T COG5133 54 IDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRF 133 (181)
T ss_pred CCHHHHHHHHHHCCCCCCCCCHHHCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHEEEEEHHCCCCCE
T ss_conf 68899999998607988874076601352025534678887704789999635887206887764320332000379841
Q ss_pred CEEEE
Q ss_conf 23550
Q gi|254780831|r 74 NAVVT 78 (341)
Q Consensus 74 ~v~V~ 78 (341)
+++|.
T Consensus 134 ~v~v~ 138 (181)
T COG5133 134 HVQVH 138 (181)
T ss_pred EEEEE
T ss_conf 68999
No 212
>PRK05480 uridine kinase; Provisional
Probab=90.85 E-value=0.32 Score=28.08 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=30.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2010244666542578999989872357750698822467
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
-+|+|+ |-.|.||||+|-.|+-.|.. .++.++..|=|
T Consensus 7 ~iIgIa-G~SgSGKTT~a~~L~~~l~~--~~v~vi~~D~Y 43 (209)
T PRK05480 7 IIIGIA-GGSGSGKTTVASTIYEELGD--ESIAVISQDSY 43 (209)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHCCC--CCEEEEECCCC
T ss_conf 899998-99977899999999998086--87599955441
No 213
>PRK08006 replicative DNA helicase; Provisional
Probab=90.79 E-value=0.32 Score=28.11 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...| ..|++|+++=+..
T Consensus 225 ~Livia-aRPsmGKTalalnia~~~a~~~~~~V~~fSlEM 263 (471)
T PRK08006 225 DLIIVA-ARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM 263 (471)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 389999-469987699999999999986699579981679
No 214
>PRK08840 replicative DNA helicase; Provisional
Probab=90.78 E-value=0.26 Score=28.76 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...+ +.|+.|+++-+..
T Consensus 218 ~Livia-aRPsmGKTalalnia~n~a~~~~~~v~~fSlEM 256 (464)
T PRK08840 218 DLIIVA-ARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEM 256 (464)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 679998-379873689999999999996599679976779
No 215
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=90.64 E-value=0.49 Score=26.91 Aligned_cols=84 Identities=19% Similarity=0.364 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEE----ECCCCCCCCCCC------------------------CCC--C-CC-C
Q ss_conf 87847899999999999860676342355----032223433322------------------------234--6-54-2
Q gi|254780831|r 49 HTIAHQLQSLRSNAQQIIQNIPTVKNAVV----TLTENKNPPQQR------------------------NNL--N-VK-K 96 (341)
Q Consensus 49 ~~~cp~~~~l~~~i~~~l~~i~gv~~v~V----~lt~~~~~~~~~------------------------~~~--~-~~-~ 96 (341)
++.|.+++.|.+...+++..-........ ..+.....+..+ ... | ++ -
T Consensus 25 C~~C~aw~t~~E~~~~~vssGtn~~s~~a~~~~~~~~~~g~~~~~K~~~~s~I~~~e~~rf~s~~~ElDrVLGGGivpGs 104 (481)
T TIGR00416 25 CPACHAWNTLTEERLKKVSSGTNARSLKAQKNRRASLKAGVPQAQKAQTISAIELEEEPRFSSGFGELDRVLGGGIVPGS 104 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCEEECCCCCCCC
T ss_conf 88866531377787765302310001011245553115886521024123433420676053066410011067222441
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0102446665425789999898723577506988224
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|.|- |.-|+||||+=.-.+..||+.-.+|+.|=+-
T Consensus 105 liLiG-G~PG~GKSTLLLqV~~~LA~~~~~~LYVsGE 140 (481)
T TIGR00416 105 LILIG-GDPGIGKSTLLLQVACQLAKNSMKVLYVSGE 140 (481)
T ss_pred EEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 69846-8899635678999999984048816899723
No 216
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.61 E-value=0.19 Score=29.68 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEE-C---CCC----CC-CCCC-------CCCCCCCCCEECCCCCCCCCHHHHHH
Q ss_conf 8478999999999998606763423550-3---222----34-3332-------22346542010244666542578999
Q gi|254780831|r 51 IAHQLQSLRSNAQQIIQNIPTVKNAVVT-L---TEN----KN-PPQQ-------RNNLNVKKFVAVASGKGGVGKSTTVV 114 (341)
Q Consensus 51 ~cp~~~~l~~~i~~~l~~i~gv~~v~V~-l---t~~----~~-~~~~-------~~~~~~~~iiav~SgKGGVGKSt~s~ 114 (341)
....+..|..++++.|..- +...+.-+ + +.. .. +.-. .-.....-+|-.-+|-.||||||+|.
T Consensus 32 ~~~~A~~ia~ei~~~L~~~-~~~~i~~~el~~~v~~~l~~~~~~~~a~rY~~~r~~r~~~~pliILigGtsGvGKSTlA~ 110 (306)
T PRK04220 32 KPDLAYEIASEIEEELKKE-GITKITKEELRRRVYYKLIEKDYEEIAEKYLLWRRIRKSKEPIIILIGGASGVGTSTIAF 110 (306)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 8889999999999999865-771635999999999999984409999999999998536998799985899887899999
Q ss_pred HHHHHHCCCCCEEEEEECC
Q ss_conf 9898723577506988224
Q gi|254780831|r 115 NIACALKNKGKNVAILDAD 133 (341)
Q Consensus 115 nLa~ala~~G~~V~liDaD 133 (341)
.||.-|. -+. ++..|
T Consensus 111 ~LA~rLg---I~~-visTD 125 (306)
T PRK04220 111 ELASRLG---IRS-VIGTD 125 (306)
T ss_pred HHHHHHC---CCE-EECCH
T ss_conf 9999709---883-42221
No 217
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.60 E-value=0.16 Score=30.14 Aligned_cols=34 Identities=38% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCC
Q ss_conf 4666542578999989872357-750698822467
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNK-GKNVAILDADVY 135 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~ 135 (341)
-|=-|-||||+|-.|...|.+. |+.|-++|.|..
T Consensus 398 TGLsgsGKsTiA~al~~~L~~~~~~~v~lLDGD~~ 432 (568)
T PRK05537 398 TGLSGAGKSTIAKALMAKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 45788877699999999999718927999546888
No 218
>PRK08760 replicative DNA helicase; Provisional
Probab=90.58 E-value=0.79 Score=25.52 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=31.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 20102446665425789999898723-5775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...| +.|+.|+++-+..
T Consensus 230 ~LiVia-aRPsmGKTalalnia~~~A~~~~~~V~~fSLEM 268 (476)
T PRK08760 230 DLIILA-ARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 779998-778874789999999999983799789970369
No 219
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.48 E-value=0.21 Score=29.34 Aligned_cols=42 Identities=31% Similarity=0.405 Sum_probs=32.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCEE
Q ss_conf 201024466654257899998987235775069882246787--653100
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP--SIPKLL 143 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p--s~~~~l 143 (341)
+-|.|+ |=-|.||||+..-||..|.-. .+|+|=|.| |+..|-
T Consensus 4 ~a~VVm-GVsGsGKSTvg~~LA~~L~~~-----fiegDd~Hp~~Ni~KM~ 47 (176)
T PRK09825 4 ESYILM-GVSGSGKSLIGSKIAALFSAK-----FIDGDDLHPAKNIDKMS 47 (176)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHCCC-----EECCCCCCCHHHHHHHH
T ss_conf 579998-289899899999999995987-----76234437898999986
No 220
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.47 E-value=0.37 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 4201024466654257899998987235775069882246
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.++++|+ |--|+|||+++...++..++.|.+|..+-.|-
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 9789999-38998689999999997762698589999206
No 221
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.46 E-value=0.3 Score=28.29 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=33.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.-....||--|+||||++...+.+-++.|-+++++-.+
T Consensus 266 GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~Fe 303 (501)
T PRK09302 266 GSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFE 303 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 94699988999888999999999998659908999996
No 222
>PRK08694 consensus
Probab=90.46 E-value=0.26 Score=28.70 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=32.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCC-EEEEEECCC
Q ss_conf 201024466654257899998987235775-069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGK-NVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~-~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...|..|+ +|+++-+..
T Consensus 219 ~LiVIa-aRPsmGKTalalnia~~~a~~~~~~V~~fSLEM 257 (468)
T PRK08694 219 DLIIVA-GRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEM 257 (468)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 479996-178653789999999999984798479977889
No 223
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.03 E-value=0.31 Score=28.24 Aligned_cols=34 Identities=35% Similarity=0.413 Sum_probs=27.4
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 024466654257899998987235775069882246787
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
-|..|--|.||||++.-||-.|.-. .+|+|.+.|
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~-----~i~~D~~h~ 35 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP-----FIDGDDLHP 35 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-----EECCCCCCC
T ss_conf 8999189999999999999971995-----641543354
No 224
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=89.96 E-value=0.19 Score=29.68 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 6665425789999898723577506988224
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|--|-||||+|-.|...|.+.|+.+-++|.|
T Consensus 450 GlsgsGKstiA~~le~~L~~~g~~~~~LDGd 480 (613)
T PRK05506 450 GLSGSGKSTIANLVERRLHALGRHTYVLDGD 480 (613)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf 7898974799999999999779987998808
No 225
>PRK06547 hypothetical protein; Provisional
Probab=89.95 E-value=0.38 Score=27.65 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=26.8
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 65420102446665425789999898723577506988224
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+--+||||= |.+|-||||++..|+..+. + +-++-.|
T Consensus 13 g~~~iVaID-G~sGaGKTTLA~~La~~~~--~--~~vvHmD 48 (184)
T PRK06547 13 GDMITVLID-GRSGSGKTTLAGELAACWE--G--SQLVHLD 48 (184)
T ss_pred CCEEEEEEE-CCCCCCHHHHHHHHHHHCC--C--CCEEEEC
T ss_conf 976999986-8998888999999997457--9--8289705
No 226
>PRK13695 putative NTPase; Provisional
Probab=89.85 E-value=0.32 Score=28.10 Aligned_cols=30 Identities=40% Similarity=0.632 Sum_probs=25.0
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 1024466654257899998987235775069
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVA 128 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~ 128 (341)
|.+ +|+-||||||+--.+.-.|.+.|++++
T Consensus 6 I~i-TG~PGvGKTTli~Kv~~~L~~~g~~v~ 35 (174)
T PRK13695 6 IGI-TGMPGVGKTTLVLKIAELLAREGYKVG 35 (174)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 998-789998899999999999863696174
No 227
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.83 E-value=0.35 Score=27.86 Aligned_cols=40 Identities=23% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 54201024466654257899998987235775069882246787
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
.+++|||+ |--||||+|.-++..|.+.|.++.+. .+|..|
T Consensus 116 ~~~~IaVT---GTnGKTTttsli~~iL~~~g~~~~~~-GNiG~p 155 (487)
T PRK03369 116 PRRWLVVT---GTNGKTTTTSMLHAMLRAAGRRSVLC-GNIGSP 155 (487)
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCHH
T ss_conf 66559997---98872789999999998589985998-136657
No 228
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.31 E-value=0.28 Score=28.54 Aligned_cols=31 Identities=39% Similarity=0.519 Sum_probs=24.3
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 01024466654257899998987235775069882246
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
||+|+ |.=|.||||++--| ++.|++| +|||-
T Consensus 1 iigiT-G~igSGKStv~~~l----~~~g~~v--~~aD~ 31 (179)
T cd02022 1 IIGLT-GGIGSGKSTVAKLL----KELGIPV--IDADK 31 (179)
T ss_pred CEEEE-CCCCCCHHHHHHHH----HHCCCEE--EECHH
T ss_conf 98863-78757899999999----9879909--96359
No 229
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=89.21 E-value=0.22 Score=29.25 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=33.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCC
Q ss_conf 201024466654257899998987235775069882246-----78765310002456
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGK 148 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~ 148 (341)
+|+.| |==|.||||+.-.||-.|... .+|.|- +|.+++.+|.-.+.
T Consensus 4 ~I~Li--G~mGsGKstiGk~LA~~L~~~-----fiD~D~~Ie~~~g~sI~eif~~~Ge 54 (172)
T PRK03731 4 PLFLV--GPRGCGKTTVGMALAQALGYR-----FVDTDLWLQSTLQMTVAEIVEREGW 54 (172)
T ss_pred CEEEE--CCCCCCHHHHHHHHHHHHCCC-----EEECCHHHHHHHCCCHHHHHHHHCH
T ss_conf 88998--899998899999999985999-----7978699998839899999998398
No 230
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=89.06 E-value=0.31 Score=28.18 Aligned_cols=34 Identities=38% Similarity=0.516 Sum_probs=30.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2010244666542578999989872357750698822
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
++|+|+ |-.||||++--++..|.+.|++++++-.
T Consensus 101 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~igT 134 (481)
T PRK00139 101 KLIGVT---GTNGKTTTAYLIAQILRLLGKKAALIGT 134 (481)
T ss_pred CEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 089995---8998434999999999874986314302
No 231
>PRK07560 elongation factor EF-2; Reviewed
Probab=89.04 E-value=0.33 Score=28.06 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=6.4
Q ss_pred CCCCCCCHHH
Q ss_conf 4442100000
Q gi|254780831|r 213 GTGDAHLTIA 222 (341)
Q Consensus 213 G~gd~~lsl~ 222 (341)
|.|+.||.++
T Consensus 436 gmGElHLei~ 445 (730)
T PRK07560 436 GMGELHLEVI 445 (730)
T ss_pred ECCHHHHHHH
T ss_conf 6289999999
No 232
>pfam01106 NifU NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.
Probab=89.03 E-value=1.4 Score=23.79 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=45.0
Q ss_pred HHHHHCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCHHHHH-HHHHHHHHHHH-CCCCCCCEE
Q ss_conf 9872033847976436358765569889989999996687847899-99999999986-067634235
Q gi|254780831|r 11 DSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQ-SLRSNAQQIIQ-NIPTVKNAV 76 (341)
Q Consensus 11 e~L~~V~DPel~~dIv~lGlI~~I~I~~~~V~i~l~lt~~~cp~~~-~l~~~i~~~l~-~i~gv~~v~ 76 (341)
++|.+ +-|-+..| -|-+.=+.++++.+.+.|.=.+.+||... +++.-++..|+ .+|.+..|.
T Consensus 3 ~~le~-IRP~l~~d---GGdvelv~v~~~~v~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~Vv 66 (68)
T pfam01106 3 EVIDE-IRPMLQRD---GGDIELVDVDGDIVKVRLQGACGGCMSSTMTLKGGIERKLRERLGESLRVI 66 (68)
T ss_pred HHHHH-HCHHHHHC---CCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 79987-56488855---992899998699999998128989810899999999999998789976698
No 233
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.03 E-value=0.18 Score=29.84 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=34.8
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCC
Q ss_conf 4201024466654257899998987235775069882246-----78765310002456
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGK 148 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~ 148 (341)
++|+.| |==|.||||+.-.||-.|... .+|.|- +|.+++.+|.-.+.
T Consensus 5 knI~Li--G~mGsGKstvgk~LA~~l~~~-----fiD~D~~Ie~~~g~si~~If~~~Ge 56 (172)
T PRK05057 5 RNIFLV--GPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGADIGWVFDVEGE 56 (172)
T ss_pred CCEEEE--CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHHCCCHHHHHHHHHH
T ss_conf 828988--999998899999999996999-----6878099999979899999999749
No 234
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.87 E-value=0.39 Score=27.56 Aligned_cols=34 Identities=35% Similarity=0.399 Sum_probs=25.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 01024466654257899998987235775069882
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
-+|+. .--||||||+-.-.|+.+|.+|+|+.++=
T Consensus 99 SFaii-APTGvGKTTfg~~~sl~~a~kgkr~yii~ 132 (1187)
T COG1110 99 SFAII-APTGVGKTTFGLLMSLYLAKKGKRVYIIV 132 (1187)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 44898-27887654799999999875587499996
No 235
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.76 E-value=0.44 Score=27.21 Aligned_cols=37 Identities=32% Similarity=0.357 Sum_probs=31.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+-+.+ .|.-|+|||+++-.+|..+.+.++.+..+++.
T Consensus 20 ~~ill-~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~ 56 (151)
T cd00009 20 KNLLL-YGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 80899-89999886599999999712137982785477
No 236
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.75 E-value=0.61 Score=26.24 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=29.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCC------CEEEEEECC
Q ss_conf 20102446665425789999898723577------506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKG------KNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G------~~V~liDaD 133 (341)
+|.-++ |..|+|||+++.+||......| .+|..+|+.
T Consensus 20 ~ItEi~-G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE 62 (226)
T cd01393 20 RITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 399999-9999989999999999985422116999619999557
No 237
>PRK05973 replicative DNA helicase; Provisional
Probab=88.50 E-value=0.46 Score=27.10 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
--|-|+ |.-|.|||+++.|+|..-++.|+.|.++-...
T Consensus 65 DLIIlA-ARPsMGKTafaLnla~~A~k~g~~v~fFSLEM 102 (237)
T PRK05973 65 DLVLLG-ARPGQGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 779994-28988789999999999999599669996159
No 238
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=88.49 E-value=0.18 Score=29.73 Aligned_cols=30 Identities=43% Similarity=0.492 Sum_probs=19.4
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0102446665425789999898723577506988224
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
-|.|. ||+|||||.+-=.+ .|-++..++|-
T Consensus 33 tILvl-GKtGVGKSsTINSi------fgE~~~~~~aF 62 (249)
T cd01853 33 TILVL-GKTGVGKSSTINSI------FGERKAATSAF 62 (249)
T ss_pred EEEEE-ECCCCCHHHHHHHH------CCCCCCCCCCC
T ss_conf 99998-06876457767765------08541344776
No 239
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.45 E-value=0.54 Score=26.62 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=32.4
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECC
Q ss_conf 5420102446665425789999898723-577506988224
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDAD 133 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaD 133 (341)
+.|=+||. |+=|.|||+++.-|.-.|. +.+..++++|..
T Consensus 22 v~rH~aIl-g~TGsGKS~tv~vLl~~l~~~~~~~vlVfDpH 61 (218)
T pfam01935 22 VSRHFAIL-GSTGSGKSNTVAVLLEELLEKKGATVLIFDPH 61 (218)
T ss_pred HHHHEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 34214787-26999769999999999985479978998288
No 240
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=88.43 E-value=0.35 Score=27.85 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+||.+. |--||||||+|..||.-| |-+. ++..|
T Consensus 4 ~iilig-G~sGvGKStla~~lA~rl---gi~~-visTD 36 (197)
T PRK12339 4 TIHFIG-GIPGVGKTSISGYIARHR---AIDI-VLSGD 36 (197)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHC---CCCE-EECCH
T ss_conf 799985-799887899999999974---9975-53434
No 241
>PRK04328 hypothetical protein; Provisional
Probab=88.42 E-value=0.54 Score=26.59 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=32.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.++.| +|--|+|||+++...++.-++.|.+++.+-.+
T Consensus 25 s~~Lv-~G~pGtGKT~la~qFl~~g~~~GE~~lyis~e 61 (250)
T PRK04328 25 NVVLL-SGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 61 (250)
T ss_pred EEEEE-EECCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 69999-82899998999999999998769977999972
No 242
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=88.41 E-value=0.45 Score=27.14 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 466654257899998987235775069
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVA 128 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~ 128 (341)
+|.-||||||+--.++-.|...|.+|+
T Consensus 5 TG~pGvGKTTli~kv~~~l~~~~~~v~ 31 (168)
T pfam03266 5 TGPPGVGKTTLVKKVIELLKSEGVKVG 31 (168)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 789998899999999999986797074
No 243
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.18 E-value=0.34 Score=27.95 Aligned_cols=28 Identities=39% Similarity=0.574 Sum_probs=23.0
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 10244666542578999989872357750
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKN 126 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~ 126 (341)
+.+.-|.||+|||.++..||++.|. |..
T Consensus 3 v~~l~g~gG~GKS~lal~lAl~vA~-G~~ 30 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMAL-GKN 30 (239)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHC-CCC
T ss_conf 8999808998889999999999975-996
No 244
>PRK06321 replicative DNA helicase; Provisional
Probab=88.15 E-value=0.59 Score=26.33 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECC
Q ss_conf 2010244666542578999989872357-7506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaD 133 (341)
..|.|+ |.-|+|||+++.|+|...|.. ++.|+++=+.
T Consensus 227 dlivia-aRPsmGKTalalnia~~~a~~~~~~v~~fSLE 264 (472)
T PRK06321 227 NLMILA-ARPAMGKTALALNIAENFCFQNRLPVGIFSLE 264 (472)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 579985-38999779999999999998569946997577
No 245
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=88.13 E-value=0.35 Score=27.83 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.1
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 10244666542578999989872357
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
|-+-||.-|-||||||-.||-.|+-.
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~ 27 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 78873589686478999999863983
No 246
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=88.11 E-value=0.39 Score=27.57 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=21.9
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0102446665425789999898723577506988
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
.|+|+ |--||||||++--|+ +.|+++.-+
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~i~l 30 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR----ELGYKVIEL 30 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHH----HHCCCEEEH
T ss_conf 37993-799986687999999----829846619
No 247
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=88.09 E-value=0.33 Score=28.05 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCCC
Q ss_conf 66654257899998987235775069882246-----787653100024563
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGKV 149 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~~ 149 (341)
|==|.||||+.--||-.|.-. .+|+|- .|.+|+.+|-.++..
T Consensus 7 G~mGaGKTtvGr~LA~~L~~~-----FvD~D~~Ie~~~G~sI~eIF~~~GE~ 53 (488)
T PRK13951 7 GMMGSGKSTIGKRISEVLDLQ-----FIDMDEEIERREGRSVRRIFEEDGEE 53 (488)
T ss_pred CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHHCCCHHHHHHHHCHH
T ss_conf 999998779999999983979-----56477999998599888999887889
No 248
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.05 E-value=0.48 Score=26.92 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=45.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999966878478999999999998-6067634235503222343332223465420102446665425789999898723
Q gi|254780831|r 43 LSITVPHTIAHQLQSLRSNAQQII-QNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 43 i~l~lt~~~cp~~~~l~~~i~~~l-~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
+++.+.+|+-|..... ++.+. +.+|-+.+.+.- ... .-+++|+|+ |-=||||++.-++..|.
T Consensus 69 ~d~vV~SPGI~~~~p~---~~~a~~~~i~i~~eiel~---~~~--------~~~~iIaVT---GTnGKTTTtsli~~iL~ 131 (438)
T PRK04663 69 ADLVVTNPGIALATPE---IQPVLAKGIPVVGDIELF---AWA--------VDKPVIAIT---GSNGKSTVTDLTGVMAK 131 (438)
T ss_pred CCEEEECCCCCCCCHH---HHHHHHCCCCEECHHHHH---HHH--------CCCCEEEEE---CCCCHHHHHHHHHHHHH
T ss_conf 9999989976998989---999998699370388999---764--------589789994---89982899999999998
Q ss_pred CCCCEEEEEECCCCCC
Q ss_conf 5775069882246787
Q gi|254780831|r 122 NKGKNVAILDADVYGP 137 (341)
Q Consensus 122 ~~G~~V~liDaDi~~p 137 (341)
+.|+++.+ -.+|.-|
T Consensus 132 ~~g~~~~~-gGNiG~p 146 (438)
T PRK04663 132 AAGVKVAV-GGNIGVP 146 (438)
T ss_pred HCCCCCEE-EEECCCH
T ss_conf 28997068-7215716
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.99 E-value=0.53 Score=26.65 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 446665425789999898723577506988224
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
..|.=|+|||-+|.-+|-+|-++|+.|..+-+.
T Consensus 188 f~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~ 220 (330)
T PRK06835 188 FYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSD 220 (330)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 889999988999999999999879949996299
No 250
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.93 E-value=0.59 Score=26.35 Aligned_cols=35 Identities=34% Similarity=0.596 Sum_probs=29.4
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
....+|--|+||||+..-+|..|+ .|++|+.+-.-
T Consensus 92 ~iLlgGePGIGKSTLlLQ~a~~la-~~~~vLYvSGE 126 (454)
T PRK11823 92 VVLIGGDPGIGKSTLLLQVAAALA-AGGKVLYVSGE 126 (454)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEECCC
T ss_conf 899507998889999999999985-59957998150
No 251
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.66 E-value=0.54 Score=26.62 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=29.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2010244666542578999989872357750698822467
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
++|||+ |-=||||+|.-++..|.+.|+++.+. .+|.
T Consensus 123 ~iIaVT---GTnGKTTTt~li~~iL~~~g~~~~~~-GNIG 158 (501)
T PRK02006 123 KVLAIT---GTNGKTTTTSLTGLLCERAGKKVAVA-GNIS 158 (501)
T ss_pred CEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE-CCCC
T ss_conf 489993---89966879999999999769974652-5646
No 252
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.63 E-value=0.54 Score=26.59 Aligned_cols=39 Identities=33% Similarity=0.529 Sum_probs=30.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 4201024466654257899998987235775069882246787
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
.++|||+ |=-||||++.-++..|.+.|+++.+ -.+|.-|
T Consensus 114 ~~iIaVT---GTnGKTTTtsli~~iL~~~g~~~~~-gGNIG~p 152 (457)
T PRK01390 114 APFIAIT---GTNGKSTTTALIAHLLRQAGRDVQM-GGNIGTA 152 (457)
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE-ECCCCHH
T ss_conf 9889992---8996498999999999973998699-6662401
No 253
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=87.55 E-value=2.3 Score=22.38 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 65425789999898723577506988224678
Q gi|254780831|r 105 GGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 105 GGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
-|.||-.+|+.++..|...|++|..+-.|-|-
T Consensus 11 SglGKGi~~aSig~ll~~~g~~V~~~K~DPYl 42 (255)
T cd03113 11 SSLGKGITAASLGRLLKARGLKVTAQKLDPYL 42 (255)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf 15730899999999999789758898425650
No 254
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=87.39 E-value=0.68 Score=25.94 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=29.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 01024466654257899998987235775069882
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
+|++- |=-|.||||.+-.|+-.|.+.|++|.++.
T Consensus 2 ~IviE-G~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 89998-99899999999999999997799389986
No 255
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.33 E-value=0.64 Score=26.14 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=31.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 4201024466654257899998987235775069882246787
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
+++|||+ |=-||||++.-++..|.+.|+++.+. .+|..|
T Consensus 123 ~~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~~-GNIG~p 161 (476)
T PRK00141 123 RTWLAVT---GTNGKTTTTAMLAAMMQAGGFAAVAV-GNIGIP 161 (476)
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHCCCCCEEE-EECCCH
T ss_conf 7638896---89967989999999998379972899-506724
No 256
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=87.25 E-value=0.35 Score=27.85 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCEE
Q ss_conf 466654257899998987235775069882246787--653100
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP--SIPKLL 143 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p--s~~~~l 143 (341)
-|=-|.||||++..|+.-|.+.=-..-.+|.|=..| ||.+|-
T Consensus 4 mGvaG~GKs~~a~~l~~~lg~iyPd~~yieGDdLHP~~Ni~KMs 47 (175)
T TIGR01313 4 MGVAGSGKSTIASALAHRLGDIYPDAKYIEGDDLHPAANIEKMS 47 (175)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 60278628899999999854315788756886667877798731
No 257
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=87.17 E-value=0.83 Score=25.36 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=40.7
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCEECCCC
Q ss_conf 54201024466654257899998987235775069882246-7876531000245
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-YGPSIPKLLKISG 147 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-~~ps~~~~lg~~~ 147 (341)
..||+.++ |.=+.||||++..+.....+.|..+..+|+-- +-|+-..-+|++.
T Consensus 54 ~GRivei~-G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~~~a~~lGVD~ 107 (325)
T cd00983 54 KGRIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDL 107 (325)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHHHHCCCCH
T ss_conf 88089998-8987779999999999987359839999625425989999809984
No 258
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=87.13 E-value=0.76 Score=25.62 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=35.5
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 13777589974556444210000000-22340267421443113456667776400122114455442
Q gi|254780831|r 199 VWGQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 199 ~w~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
.|.+..|.++||| |--|-.-..... ...|.+++|.-...--....++.+.++++.+.|++ +++|+
T Consensus 63 ~~~~~~i~~iDtP-Gh~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~i-v~vNK 128 (185)
T pfam00009 63 ETKKRHINIIDTP-GHVDFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPII-VFINK 128 (185)
T ss_pred EECCCEEEEEECC-CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEE-EEEEC
T ss_conf 6089368999899-871439999999864656429998676853230999999998289879-99977
No 259
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.98 E-value=0.6 Score=26.31 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 42010244666542578999989872357750698822467876
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
+++|||+ |=-||||++.-++..|.+.|+++. +-.+|.-|.
T Consensus 105 ~~iIaVT---GTnGKTTTt~li~~iL~~~g~~~~-~gGNiG~p~ 144 (438)
T PRK03806 105 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVG-VGGNIGLPA 144 (438)
T ss_pred CCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCH
T ss_conf 9889994---899848999999999986599756-771577527
No 260
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=86.75 E-value=0.61 Score=26.25 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6665425789999898723577506988
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
|=-|+||||.+-.|+-.|.+.|++|...
T Consensus 3 GiDGsGKsTq~~~L~~~L~~~g~~v~~~ 30 (186)
T pfam02223 3 GLDGAGKTTQAELLKERLKEQGIKVVLT 30 (186)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999899999999999999879908997
No 261
>PRK06904 replicative DNA helicase; Validated
Probab=86.65 E-value=0.66 Score=26.02 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=30.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCC
Q ss_conf 2010244666542578999989872357-75069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi 134 (341)
..|.++ |.-|+|||+++.|+|...|.. ++.|+++-+..
T Consensus 222 ~LiViA-aRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM 260 (472)
T PRK06904 222 DLIIVA-ARPSMGKTTFAMNLCENAAMASEKPVLVFSLEM 260 (472)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 579997-379875689999999999995599579977879
No 262
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.51 E-value=0.71 Score=25.83 Aligned_cols=38 Identities=32% Similarity=0.417 Sum_probs=30.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 201024466654257899998987235775069882246787
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
++|||+ |--||||++.-++..|...|+++.+ -.++.-|
T Consensus 110 ~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~-gGNiG~p 147 (448)
T PRK03803 110 PIVAIT---GSNAKSTVTTLVGEMAKAAGKRVAV-GGNLGTP 147 (448)
T ss_pred CEEEEC---CCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCH
T ss_conf 889985---8998388999999999865983799-4032761
No 263
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.50 E-value=2 Score=22.88 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=26.8
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|-|.-|. |=||||-|..+|+--+-.|+||+++-.=
T Consensus 6 i~iytG~-GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T pfam02572 6 LIVYTGN-GKGKSTAAFGMALRALGHGMRVGVVQFI 40 (172)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 9999579-9971889999999982599889999995
No 264
>KOG3354 consensus
Probab=86.50 E-value=0.83 Score=25.36 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=33.8
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCE
Q ss_conf 54201024466654257899998987235775069882246787--65310
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP--SIPKL 142 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p--s~~~~ 142 (341)
.+.+|.|+ |--|.||||+..-|+-.|... .+|+|=+.| |+..|
T Consensus 11 ~k~~i~vm-GvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM 55 (191)
T KOG3354 11 FKYVIVVM-GVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKM 55 (191)
T ss_pred CCEEEEEE-ECCCCCHHHHHHHHHHHHCCC-----CCCCCCCCCHHHHHHH
T ss_conf 76059998-358877445999999985886-----2455557987889988
No 265
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=86.44 E-value=0.76 Score=25.62 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 4201024466654257899998987235775069882246
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
..+|+++ |+=|.||||++--+ ++.|+. ++|||.
T Consensus 2 ~~iIglT-G~igsGKStva~~~----~~~G~~--vidaD~ 34 (201)
T COG0237 2 MLIIGLT-GGIGSGKSTVAKIL----AELGFP--VIDADD 34 (201)
T ss_pred CEEEEEE-CCCCCCHHHHHHHH----HHCCCE--EEECCH
T ss_conf 6499995-78877889999999----977993--998869
No 266
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.28 E-value=0.45 Score=27.14 Aligned_cols=41 Identities=37% Similarity=0.438 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCC
Q ss_conf 66654257899998987235775069882246-----78765310002456
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGK 148 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~ 148 (341)
|==|+||||+.-.||-.|... .+|+|- +|-+++.+|.-.+.
T Consensus 6 G~~G~GKstigk~la~~l~~~-----fiD~D~~Ie~~~g~si~eif~~~Ge 51 (154)
T cd00464 6 GMMGAGKTTVGRLLAKALGLP-----FVDLDELIEQRAGMSIPEIFAEEGE 51 (154)
T ss_pred CCCCCCHHHHHHHHHHHHCCC-----EEECCHHHHHHHCCCHHHHHHHCCH
T ss_conf 899998899999999997989-----7968599999949999999987493
No 267
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.10 E-value=1.1 Score=24.56 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=35.2
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 0102446665425789999898723577506988224678
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
||+|+ |--|-||||+.--+.-.|.+.|-+..++..|-|.
T Consensus 1 IIaVt-GsSGAGtsTv~r~f~~IF~re~v~a~vIegD~fH 39 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFH 39 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98993-3888847879999999872058852899678665
No 268
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=86.00 E-value=0.58 Score=26.40 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1377758997455644421000000-022340267421443113456667776400122114455442
Q gi|254780831|r 199 VWGQLDFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 199 ~w~~~D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
.|.+.-|.+|||| |--|-.-.... ....|.+++|.--..--....++.+.++++.+.|++ +++|.
T Consensus 58 ~~~~~~i~~iDTP-Gh~~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~i-v~iNK 123 (189)
T cd00881 58 EWPDRRVNFIDTP-GHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINK 123 (189)
T ss_pred EECCEEEEEEECC-CCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 9899899999699-818899999999864685699998798998789999999997699879-99989
No 269
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=85.97 E-value=0.99 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.++.| +|--|+|||+++.-+++...+.|.++.++-.+-
T Consensus 33 ~~~li-~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee 70 (241)
T PRK06067 33 SLILI-EGENDTGKSVLSQQFVWGALNQGKRGLAITTEN 70 (241)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 08999-807998879999999999986798299999428
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=85.96 E-value=0.47 Score=27.00 Aligned_cols=44 Identities=34% Similarity=0.447 Sum_probs=30.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECC
Q ss_conf 4201024466654257899998987235775069882246-----78765310002
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKI 145 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~ 145 (341)
++|+.| |==|+||||++--||-.|.-. .+|+|- +|.+++.+|.-
T Consensus 5 ~nI~li--G~~GsGKTtvgk~LA~~L~~~-----fiD~D~~Ie~~~g~si~~if~~ 53 (175)
T PRK00131 5 PNIVLI--GMMGAGKSTIGRLLAKRLGYE-----FIDTDHLIEARAGKSIPEIFEE 53 (175)
T ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHCCC-----CCCCCHHHHHHHCCCHHHHHHH
T ss_conf 808988--899999899999999995969-----0239889997616999999998
No 271
>pfam01202 SKI Shikimate kinase.
Probab=85.82 E-value=0.7 Score=25.84 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 54257899998987235775069882246
Q gi|254780831|r 106 GVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 106 GVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|+||||+.--||-.|... .+|+|-
T Consensus 2 GsGKstigk~LA~~L~~~-----fiD~D~ 25 (158)
T pfam01202 2 GAGKTTIGRLLAKALGLP-----FIDTDQ 25 (158)
T ss_pred CCCHHHHHHHHHHHHCCC-----EEECHH
T ss_conf 897799999999996999-----788729
No 272
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.82 E-value=0.7 Score=25.85 Aligned_cols=80 Identities=25% Similarity=0.312 Sum_probs=46.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99996687847899999999999860676342355032223433322234654201024466654257899998987235
Q gi|254780831|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKN 122 (341)
Q Consensus 43 i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~ 122 (341)
+++...+|+-|....+...+++ ..+|-+.+++.-+ ... .-.++|+|+ |=-||||++.-++..|.+
T Consensus 64 ~d~iV~SPGI~~~~p~~~~a~~--~~i~i~~eiel~~--~~~--------~~~~~IaIT---GTnGKTTTt~li~~iL~~ 128 (450)
T PRK01368 64 LDKIVLSPGIPLTHEIVKIAKN--FNIPITSDIDLLF--EKS--------KNLKFIAIT---GTNGKSTTTALISHILNS 128 (450)
T ss_pred CCEEEECCCCCCCCHHHHHHHH--CCCCEEEHHHHHH--HHC--------CCCCEEEEE---CCCCCHHHHHHHHHHHHH
T ss_conf 9999989961998999999998--7995876999999--766--------799779996---899974899999999997
Q ss_pred CCCEEEEEECCCCCCC
Q ss_conf 7750698822467876
Q gi|254780831|r 123 KGKNVAILDADVYGPS 138 (341)
Q Consensus 123 ~G~~V~liDaDi~~ps 138 (341)
.|+++.+ -.+|.-|-
T Consensus 129 ~g~~~~~-~GNIG~p~ 143 (450)
T PRK01368 129 NGLDYPV-AGNIGVPA 143 (450)
T ss_pred CCCCEEE-ECCCCHHH
T ss_conf 5996289-62556366
No 273
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=85.81 E-value=0.66 Score=26.04 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred CCCCCEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 377758997455644421000000-0223402674214431134566677764001221144554420245877886651
Q gi|254780831|r 200 WGQLDFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYD 278 (341)
Q Consensus 200 w~~~D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~ 278 (341)
|.+..|.+||+| |--|-.-.+.. ....|.+++|.-...-.....++-..+++.++++-+=+++|.. +..+-...
T Consensus 74 ~~~~~~~iiDtP-GH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKm----D~v~~~e~ 148 (208)
T cd04166 74 TPKRKFIIADTP-GHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKM----DLVDYSEE 148 (208)
T ss_pred ECCCEEEEEECC-CCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECC----CCCCCCHH
T ss_conf 199269998789-6288999999998637747999975888727899999999974998399999885----76899989
Q ss_pred CCCC--CHHHHHHHHHCCCEEEECCCCH
Q ss_conf 2477--6589999984797898827998
Q gi|254780831|r 279 LFGN--GGARFEAEKIGIPFLESVPFDM 304 (341)
Q Consensus 279 ~fg~--~~~~~~a~~~~i~~lg~IP~d~ 304 (341)
.|.+ ...+.+.++++..-...||.+-
T Consensus 149 ~f~~i~~~~~~~l~~~~~~~~~~IPiSa 176 (208)
T cd04166 149 VFEEIVADYLAFAAKLGIEDITFIPISA 176 (208)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9999999999999974998871998126
No 274
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=85.81 E-value=0.65 Score=26.09 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1377758997455644421000000-022340267421443113456667776400122114455442
Q gi|254780831|r 199 VWGQLDFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 199 ~w~~~D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
.|.+.-|-+|||| |--|-.-.+.. ....|++|+|.--..--....++.+.++++.++|.+ +++|.
T Consensus 61 ~~~~~~~n~IDtP-GH~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~i-v~iNK 126 (194)
T cd01891 61 TYKDTKINIVDTP-GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINK 126 (194)
T ss_pred EECCEEEEEEECC-CCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 9899889999899-847777789877643446789865378975899999999987299749-98856
No 275
>COG4240 Predicted kinase [General function prediction only]
Probab=85.58 E-value=0.82 Score=25.40 Aligned_cols=41 Identities=37% Similarity=0.431 Sum_probs=34.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCC-CEEEEEECC-CCC
Q ss_conf 20102446665425789999898723577-506988224-678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKG-KNVAILDAD-VYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G-~~V~liDaD-i~~ 136 (341)
-.|.-.||--|.||||+|+-+-.-|+++| ++++-+-.| +|-
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHC
T ss_conf 6399852688876535999999999973653068866455310
No 276
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.57 E-value=0.68 Score=25.93 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99996687847899999999999860676342355032223433322234654201024466654257899998987235
Q gi|254780831|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKN 122 (341)
Q Consensus 43 i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~ 122 (341)
+++.+.+|+-|....+...+++ +.+|-+.+++.- +.-.. .......+|||+ |=-||||+|.-++..|.+
T Consensus 78 ~d~vV~SPGI~~~~p~~~~a~~--~gi~i~~eiel~--~~~~~----~~~~~~~~IaVT---GTnGKTTTtsli~~iL~~ 146 (481)
T PRK01438 78 TELVVTSPGWRPTHPLLAAAAE--AGIPVWGDVELA--WRLRD----PDGTPAPWLAVT---GTNGKTTTVQMLASILRA 146 (481)
T ss_pred CCEEEECCCCCCCCHHHHHHHH--CCCCEECHHHHH--HHHHH----CCCCCCCEEEEE---CCCCCHHHHHHHHHHHHH
T ss_conf 9999989978998999999998--699386189999--98752----136888789993---899746099999999996
Q ss_pred CCCEEEEEECCCCCCCCCCEE
Q ss_conf 775069882246787653100
Q gi|254780831|r 123 KGKNVAILDADVYGPSIPKLL 143 (341)
Q Consensus 123 ~G~~V~liDaDi~~ps~~~~l 143 (341)
.|+++.+. ..|..|-+..+.
T Consensus 147 ~g~~~~~~-GNIG~p~l~~~~ 166 (481)
T PRK01438 147 AGLRAAAV-GNIGVPVLDAVR 166 (481)
T ss_pred CCCCEEEE-EECCHHHHHHHC
T ss_conf 69970799-625677776422
No 277
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=85.54 E-value=0.86 Score=25.24 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=32.1
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 4201024466654257899998987235775069882246
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
+||+.|+.|=||.||-| |.-|+..|-.|.+.|.|.
T Consensus 424 ~~Va~VtGGasGIG~~~-----A~rL~~eGAhvV~aD~d~ 458 (709)
T TIGR02632 424 RRVAFVTGGASGIGRET-----ARRLVDEGAHVVLADLDA 458 (709)
T ss_pred CEEEEEECCCCCHHHHH-----HHHHHHCCCEEEEECCCH
T ss_conf 70688973886526899-----999973697799962365
No 278
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.52 E-value=0.6 Score=26.32 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=46.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99996687847899999999999860676342355032223433322234654201024466654257899998987235
Q gi|254780831|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKN 122 (341)
Q Consensus 43 i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~ 122 (341)
+++...+|+-|....+...+++ ..+|-+.+++.-+ ...+. .-.++|+|+ |--||||++.-++..|.+
T Consensus 60 ~d~vv~SPGi~~~~p~~~~a~~--~~i~i~seiel~~--~~~~~------~~~~~IaIT---GTNGKTTTt~ll~~iL~~ 126 (418)
T PRK00683 60 VDLVVRSPGIKPYHPWVEAAVA--LKIPVVTDIQLAF--QTPEF------QRYPSLGIT---GSTGKTTTILFLEHLLRT 126 (418)
T ss_pred CCEEEECCCCCCCCHHHHHHHH--CCCCCCCHHHHHH--HHHHH------CCCCEEEEE---CCCCCEEHHHHHHHHHHH
T ss_conf 9899989985998899999998--6997540799997--42441------479879997---689866099999999986
Q ss_pred CCCEEEEEECCCCCC
Q ss_conf 775069882246787
Q gi|254780831|r 123 KGKNVAILDADVYGP 137 (341)
Q Consensus 123 ~G~~V~liDaDi~~p 137 (341)
.|+++.+. ..|.-|
T Consensus 127 ~g~~~~~~-GNIG~p 140 (418)
T PRK00683 127 LGIPAFAM-GNIGLP 140 (418)
T ss_pred CCCCCEEE-ECCCHH
T ss_conf 79981888-034657
No 279
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=85.41 E-value=0.67 Score=25.97 Aligned_cols=31 Identities=39% Similarity=0.518 Sum_probs=24.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 01024466654257899998987235775069882246
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
||+++ |.=|.||||++--| .+.|++| +|||-
T Consensus 2 iIgiT-G~IgsGKStv~~~l----~~~G~~v--idaD~ 32 (179)
T pfam01121 2 IVGLT-GGIGSGKSTVANLF----ADLGVPI--VDADV 32 (179)
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCCE--EECHH
T ss_conf 89985-78647899999999----9879919--91809
No 280
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=85.34 E-value=1.2 Score=24.42 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCEECCCC
Q ss_conf 54201024466654257899998987235775069882246-7876531000245
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-YGPSIPKLLKISG 147 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-~~ps~~~~lg~~~ 147 (341)
..||+.++ |.=+.||||++........+.|..+..+|+.- +-|+-..-+|++.
T Consensus 51 ~GRi~ei~-G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d~~~a~~lGVD~ 104 (322)
T pfam00154 51 KGRIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDI 104 (322)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHCCCCH
T ss_conf 87089998-8987778999999999997349938998536605988999809880
No 281
>PRK05439 pantothenate kinase; Provisional
Probab=85.33 E-value=0.98 Score=24.87 Aligned_cols=45 Identities=29% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCC-CC
Q ss_conf 6542010244666542578999989872357--7506988224678-76
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYG-PS 138 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~-ps 138 (341)
.+.-||.|+ |-=.|||||+|--|...|++- ..+|-|+-.|=|- ||
T Consensus 84 ~~PfIIGIa-GSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLypN 131 (312)
T PRK05439 84 KVPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYPN 131 (312)
T ss_pred CCCEEEEEE-EEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 999899976-201026288999999999507899945899346655786
No 282
>PRK13947 shikimate kinase; Provisional
Probab=85.29 E-value=0.82 Score=25.42 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=33.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCC
Q ss_conf 4201024466654257899998987235775069882246-----7876531000245
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISG 147 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~ 147 (341)
++|+.| |==|.||||+.-.||-.|... .+|.|- +|-|++.+|--.+
T Consensus 2 knI~Li--G~mGsGKTtiGk~La~~L~~~-----fiD~D~~Ie~~~g~sI~eIf~~~G 52 (171)
T PRK13947 2 KNIVLI--GFMGTGKTTVGKKVATTLSFG-----FIDTDKEIEKMAGMTVSEIFEKDG 52 (171)
T ss_pred CCEEEE--CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHCCCCHHHHHHHHC
T ss_conf 858997--999998899999999997969-----898749999882998899999848
No 283
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.13 E-value=0.9 Score=25.13 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=32.0
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 4201024466654257899998987235775069882246787653
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIP 140 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~ 140 (341)
.++|+|+ |--||||+|.-++..|.+.|+++.+ =.+|..|-+.
T Consensus 110 ~~~IaVT---GTnGKTTTtsli~~iL~~~g~~~~~-~GNiG~p~~~ 151 (445)
T PRK04308 110 DKVIAIT---GSNGKTTVTSLVGYLCIKCGLDTVI-AGNIGTPVLE 151 (445)
T ss_pred CCEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEE-EEECCCCCHH
T ss_conf 9579994---8998377999999999975996299-8503752111
No 284
>PRK06761 hypothetical protein; Provisional
Probab=85.12 E-value=1 Score=24.79 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-ECCC
Q ss_conf 20102446665425789999898723577506988-2246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAIL-DADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~li-DaDi 134 (341)
|.|-|- |=-|.||||++--|+-.|.+.|+.|-+. -.|.
T Consensus 3 kLIiIE-GlPGsGKSTta~~l~d~L~~~g~~v~~~~Egd~ 41 (281)
T PRK06761 3 KLIIIE-GLPGFGKSTTAHLLNDKLSQLKIEVELFVEGDL 41 (281)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 179996-689998014999999999866985389950789
No 285
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.04 E-value=0.8 Score=25.47 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 201024466654257899998987235775069882246787
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
++|||+ |==||||+|.-++..|...|+++.+ -.+|.-|
T Consensus 118 ~~IaVT---GTnGKTTTtsmi~~iL~~~g~~~~~-gGNiG~p 155 (458)
T PRK01710 118 KVFGIT---GSDGKTTTTTLIYEMLKEEGYKTWV-GGNIGTP 155 (458)
T ss_pred CEEEEE---CCCCCHHHHHHHHHHHHHCCCCEEE-ECCCCCH
T ss_conf 779993---6898478999999999984997585-1662644
No 286
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=0.99 Score=24.86 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=30.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
-+|. .+|--|+||||+-.-++..||+.+ +|+.+-..
T Consensus 94 s~iL-IgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE 129 (456)
T COG1066 94 SVIL-IGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE 129 (456)
T ss_pred CEEE-ECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECC
T ss_conf 1799-736898779899999999987059-57999677
No 287
>KOG4658 consensus
Probab=84.91 E-value=0.55 Score=26.56 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 20102446665425789999898723
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
.|+.++ |-|||||||++..+=--+.
T Consensus 180 ~ivgi~-GMGGvGKTTL~~qi~N~~~ 204 (889)
T KOG4658 180 GIVGIY-GMGGVGKTTLARQIFNKFD 204 (889)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHCCH
T ss_conf 689998-8970349999999841331
No 288
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=84.82 E-value=0.76 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=14.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 6677764001221144554420
Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMS 266 (341)
Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs 266 (341)
.+.++.+++.+.|++ +|.|++
T Consensus 95 ~~i~~~l~~~~kp~i-~v~NK~ 115 (157)
T cd01894 95 EEIAKYLRKSKKPVI-LVVNKV 115 (157)
T ss_pred HHHHHHHHHHCCCEE-EEEECC
T ss_conf 999999998479809-999787
No 289
>PRK13948 shikimate kinase; Provisional
Probab=84.81 E-value=0.76 Score=25.62 Aligned_cols=44 Identities=39% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECC
Q ss_conf 201024466654257899998987235775069882246-----78765310002
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKI 145 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~ 145 (341)
..|... |==|.||||+.-.||-.|.-. .+|.|- +|-+++.+|.-
T Consensus 11 ~~IvLI-G~mGsGKStiGk~LA~~l~~~-----fiD~D~~Ie~~~g~sI~eIF~~ 59 (182)
T PRK13948 11 TFVALA-GFMGTGKSRIGWELSRALALH-----FVDTDKLITRVVGKSIPEVFAQ 59 (182)
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHHCCCHHHHHHH
T ss_conf 818988-999998899999999996959-----8888499999889399999998
No 290
>PRK06217 hypothetical protein; Validated
Probab=84.76 E-value=1.1 Score=24.61 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|.|. |-+|.||||++.-||..|.-. .+|.|
T Consensus 4 I~i~-G~sGsGkSTla~~La~~l~~~-----~~~lD 33 (185)
T PRK06217 4 IHIT-GASGSGTTTLGAALAEALDLP-----HLDTD 33 (185)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHCCC-----EEECC
T ss_conf 9997-899887899999999975989-----68645
No 291
>PRK04195 replication factor C large subunit; Provisional
Probab=84.67 E-value=1.1 Score=24.66 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=25.1
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
..+.+|--||||||++--||-.+ |+.|.-+.|-
T Consensus 42 ~lLL~GPpGvGKTT~a~~lAk~~---g~~viElNAS 74 (403)
T PRK04195 42 ALLLYGPPGVGKTSLAHALANDY---GWEVIELNAS 74 (403)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCC
T ss_conf 69988939987999999999984---9985997710
No 292
>TIGR00991 3a0901s02IAP34 GTP-binding protein; InterPro: IPR005688 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts.. The cytosolic region of Toc34 reveals 34% alpha-helical and 260eta-strand structure and is stabilized by intramolecular electrostatic interaction. Toc34 binds both chloroplast preproteins and isolated transit peptides in a guanosine triphosphate- (GTP-) dependent mechanism . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=84.62 E-value=0.32 Score=28.13 Aligned_cols=28 Identities=18% Similarity=0.518 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEECCCCC
Q ss_conf 0122114455442024587788665124776
Q gi|254780831|r 253 KMNIPIIGMIENMSYFLASDTGKKYDLFGNG 283 (341)
Q Consensus 253 ~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~ 283 (341)
...+|++ +|||-. +|....+...+...|
T Consensus 202 ~~~~P~~-l~ensG--rC~~n~~~ek~lP~G 229 (328)
T TIGR00991 202 DFDIPVV-LVENSG--RCKKNESDEKILPDG 229 (328)
T ss_pred CCCCCEE-EEECCC--CCCCCCCCCCCCCCC
T ss_conf 6765568-961677--656676666025786
No 293
>PRK12740 elongation factor G; Reviewed
Probab=84.50 E-value=0.76 Score=25.60 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=6.8
Q ss_pred CCCCCCCCHHH
Q ss_conf 64442100000
Q gi|254780831|r 212 PGTGDAHLTIA 222 (341)
Q Consensus 212 pG~gd~~lsl~ 222 (341)
.|.|+.||.++
T Consensus 433 ~g~GElHLei~ 443 (670)
T PRK12740 433 SGMGELHLEVA 443 (670)
T ss_pred ECCCHHHHHHH
T ss_conf 83798999999
No 294
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=84.49 E-value=1.2 Score=24.23 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHH-HCCCCCEEEEEECC
Q ss_conf 201024466654257899998987-23577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACA-LKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~a-la~~G~~V~liDaD 133 (341)
.++.| +|.-|.|||+++..+++. +.+.|.+|+.+-.+
T Consensus 20 s~~LI-~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~e 57 (231)
T pfam06745 20 RVVLI-TGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLE 57 (231)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 69999-858972599999999999998658968999813
No 295
>PRK10218 GTP-binding protein; Provisional
Probab=84.48 E-value=0.85 Score=25.28 Aligned_cols=11 Identities=9% Similarity=-0.182 Sum_probs=6.5
Q ss_pred CCCEEEECCCC
Q ss_conf 79789882799
Q gi|254780831|r 293 GIPFLESVPFD 303 (341)
Q Consensus 293 ~i~~lg~IP~d 303 (341)
+-.|.++-|+-
T Consensus 466 ~~~f~~y~~~~ 476 (607)
T PRK10218 466 YSTFSHYDDVR 476 (607)
T ss_pred EECCCCCCCCC
T ss_conf 86022567787
No 296
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=84.35 E-value=0.71 Score=25.81 Aligned_cols=36 Identities=39% Similarity=0.496 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCEE
Q ss_conf 66654257899998987235775069882246787--653100
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP--SIPKLL 143 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p--s~~~~l 143 (341)
|=-|.||||++.-||..|... .+|+|=..| |+.+|-
T Consensus 2 GVsG~GKStvg~~lA~~lg~~-----fidGDdlHp~aNi~KM~ 39 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAK-----FIDGDDLHPPANIEKMS 39 (161)
T ss_pred CCCCCCHHHHHHHHHHHCCCC-----EECCCCCCCHHHHHHHH
T ss_conf 877657779999999980982-----33356569988999872
No 297
>PRK00007 elongation factor G; Reviewed
Probab=84.31 E-value=0.83 Score=25.35 Aligned_cols=10 Identities=50% Similarity=0.909 Sum_probs=6.4
Q ss_pred CCCCCCCHHH
Q ss_conf 4442100000
Q gi|254780831|r 213 GTGDAHLTIA 222 (341)
Q Consensus 213 G~gd~~lsl~ 222 (341)
|.|+.||.++
T Consensus 454 g~GElHLei~ 463 (693)
T PRK00007 454 GMGELHLDII 463 (693)
T ss_pred CCCHHHHHHH
T ss_conf 5789999999
No 298
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=84.30 E-value=0.98 Score=24.87 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=56.2
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999996687847899999999999860676342355032223433322234654201024466654257899998987
Q gi|254780831|r 40 TVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACA 119 (341)
Q Consensus 40 ~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~a 119 (341)
.-.+++...+|+-|....+.+.+..+ .+|-+.+++.-+...+.++ -.++|+|+ |==||||+|.-+.+.
T Consensus 64 ~~~~d~vv~SPGi~~~hp~~~~a~~~--g~~v~gdi~L~~~~~~~~~-------~~~~~aIT---GTnGKtTTT~L~~~~ 131 (476)
T TIGR01087 64 LNNADLVVLSPGIPPDHPLVQAAAKR--GIPVVGDIELALRLVDFPE-------PAKVVAIT---GTNGKTTTTSLLYHL 131 (476)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHC--CCEEEEHHHHHHHHCCCCC-------CCCEEEEE---CCCCHHHHHHHHHHH
T ss_conf 33420799789898677799999966--9808986799997415789-------87379997---268607999999999
Q ss_pred HCCCCCEEEEEECCCCCCCCCCEEC
Q ss_conf 2357750698822467876531000
Q gi|254780831|r 120 LKNKGKNVAILDADVYGPSIPKLLK 144 (341)
Q Consensus 120 la~~G~~V~liDaDi~~ps~~~~lg 144 (341)
|.+.|.++ .+=.+|.-|=+..+..
T Consensus 132 L~~~G~~a-~~gGNIG~p~L~~~~~ 155 (476)
T TIGR01087 132 LKAAGLKA-VLGGNIGTPALEVLDQ 155 (476)
T ss_pred HHHCCCCE-EEECCCCCHHHHHHCC
T ss_conf 98469977-8625788125553105
No 299
>PRK13949 shikimate kinase; Provisional
Probab=84.17 E-value=1.4 Score=23.93 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=34.4
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCC
Q ss_conf 54201024466654257899998987235775069882246-----78765310002456
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGK 148 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~ 148 (341)
++||+.| |==|.||||+.-.||-.|... .+|+|- +|-+++.+|.-.+.
T Consensus 1 Mk~I~Li--G~mGsGKstiGk~La~~l~~~-----fiD~D~~Ie~~~g~sI~eif~~~Ge 53 (169)
T PRK13949 1 MARIFLV--GYMGAGKTTLGKALARELGLS-----FIDLDFFIENRFHKTVGDIFAERGE 53 (169)
T ss_pred CCCEEEE--CCCCCCHHHHHHHHHHHHCCC-----EEECCHHHHHHHCCCHHHHHHHHCH
T ss_conf 9838997--999998899999999995999-----7978499999859999999998698
No 300
>PRK13764 ATPase; Provisional
Probab=84.09 E-value=0.87 Score=25.22 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=33.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC--CCCC-CCCCCEE
Q ss_conf 2010244666542578999989872357750698822--4678-7653100
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA--DVYG-PSIPKLL 143 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa--Di~~-ps~~~~l 143 (341)
+=|.|+ |.-|-||||++.+||-.++.+|+=|--+.. |++- +.+..+-
T Consensus 260 ~GilIa-G~PGaGKsTfaqalA~~~~~~g~iVKTmEsPRDl~v~~~iTQy~ 309 (605)
T PRK13764 260 EGILIA-GAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYT 309 (605)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEC
T ss_conf 649997-79999778999999999984797898324862366895420524
No 301
>PRK07261 topology modulation protein; Provisional
Probab=84.08 E-value=1.3 Score=24.07 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=22.0
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 10244666542578999989872357750698822
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
|.|. |-+|-||||+|-.||..+ |..+.-+|.
T Consensus 3 I~Ii-G~sGsGKSTlAr~L~~~~---~ip~~~LD~ 33 (171)
T PRK07261 3 IAII-GYSGSGKSTLARFLGQHY---NCPVLHLDQ 33 (171)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHH---CCCEEEECC
T ss_conf 9998-899986899999999987---979797022
No 302
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.02 E-value=0.92 Score=25.05 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=46.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999668784789999999999986067634235503222343332223465420102446665425789999898723
Q gi|254780831|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 42 ~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
.+++...+|+-|....+.+.++++ .++-+.+++.=.-.. +-.++|+|+. ==||||+|+-++..|.
T Consensus 69 ~~d~vV~SPGi~~~~p~v~~A~~~--gi~i~~dieL~~r~~----------~~~p~vaITG---TNGKTTTTsli~~~l~ 133 (448)
T COG0771 69 EFDLVVKSPGIPPTHPLVEAAKAA--GIEIIGDIELFYRLS----------GEAPIVAITG---TNGKTTTTSLIAHLLK 133 (448)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHC--CCCEEEHHHHHHHHC----------CCCCEEEEEC---CCCHHHHHHHHHHHHH
T ss_conf 477899899999988899999986--993774888898744----------8999899979---9962889999999998
Q ss_pred CCCCEEEEEECCCCCCC
Q ss_conf 57750698822467876
Q gi|254780831|r 122 NKGKNVAILDADVYGPS 138 (341)
Q Consensus 122 ~~G~~V~liDaDi~~ps 138 (341)
..|+++ .+-.+|..|-
T Consensus 134 ~~G~~~-~lgGNIG~p~ 149 (448)
T COG0771 134 AAGLDA-LLGGNIGTPA 149 (448)
T ss_pred HCCCCC-EECCCCCCCH
T ss_conf 559983-2135167137
No 303
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.82 E-value=0.94 Score=25.01 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 201024466654257899998987235775069882246787
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
++|+|+ |=-||||+|.-++..|...|+++.+. ..|..|
T Consensus 110 ~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~~-GNIG~p 147 (459)
T PRK02705 110 PWVGIT---GTNGKTTVTHLLAHILQAAGLNAPMC-GNIGYA 147 (459)
T ss_pred CEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEE-CCCCCC
T ss_conf 757771---78972789999999999839985364-013762
No 304
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=83.70 E-value=3 Score=21.63 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=32.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHH------CCCCCEEEEEECCCCCCCCCCEECC
Q ss_conf 2010244666542578999989872------3577506988224678765310002
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACAL------KNKGKNVAILDADVYGPSIPKLLKI 145 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~al------a~~G~~V~liDaDi~~ps~~~~lg~ 145 (341)
..|.=..|--|.|||+++..||+.. ...+.+|+.||+. ++.+..++.-+
T Consensus 43 g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTE-g~f~~eRl~qi 97 (261)
T pfam08423 43 GSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTE-GTFRPERIVAI 97 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECC-CCCCHHHHHHH
T ss_conf 72999989988878999999999940709656999728999368-88698999999
No 305
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=83.60 E-value=1.5 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=34.5
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5420102446665425789999898723577506988224
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
..+|+=|+ |-.|.||||++..+++.-.+.|.++..+|+-
T Consensus 59 ~g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 59 RGRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 53589984-6887654668999988865379808999589
No 306
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=83.41 E-value=1.2 Score=24.37 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
.++++. |+=|-||||+.--|.-.+...|. +.+=+.|+..
T Consensus 31 e~vaIv-G~sGsGKSTLl~lL~gl~~~~G~-I~idg~~i~~ 69 (275)
T cd03289 31 QRVGLL-GRTGSGKSTLLSAFLRLLNTEGD-IQIDGVSWNS 69 (275)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHCCCCCE-EEECCEECCC
T ss_conf 999999-99999799999999603578953-9999880673
No 307
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=83.33 E-value=0.9 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.2
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 010244666542578999989872357
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
.|.| .|+-|.||||+.--+|+..++.
T Consensus 2 ~i~i-~G~aG~GKTtll~kl~~~wa~g 27 (165)
T pfam05729 2 TVIL-QGEAGSGKTTLLQKLALLWAQG 27 (165)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8999-8279898999999999999869
No 308
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=83.21 E-value=0.93 Score=25.05 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=21.3
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 010244666542578999989872357
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
|||| +|.-|.||||++-.||-.|.-.
T Consensus 1 iIaI-dGpagsGKsT~ak~lA~~l~~~ 26 (147)
T cd02020 1 IIAI-DGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHHCCE
T ss_conf 9888-6899789899999999990990
No 309
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=83.09 E-value=3.7 Score=21.00 Aligned_cols=113 Identities=26% Similarity=0.344 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 466654257899998987235-----775069882246787653100024563112334457663223032233343552
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKN-----KGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~-----~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341)
=|.-||||||.---+|.-++. .++||+++|--- -+.. +..+.|...-..++ ++ +-+.
T Consensus 143 igpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---EIag--~~~gvpq~~~g~R~--------dV-----ld~c 204 (308)
T COG3854 143 IGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---EIAG--CLNGVPQHGRGRRM--------DV-----LDPC 204 (308)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---HHHC--CCCCCCHHHHHHHH--------HH-----CCCC
T ss_conf 65998870779999999863151126773289971500---4303--43588603232210--------10-----4656
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 2100013420247899986752137775899745564442100000002234026742144311345666
Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKR 246 (341)
Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r 246 (341)
-++. | ..-+++.+. .+++|+|-= ||-+..+++...++ .|+-++||-+-..+.|..|
T Consensus 205 pk~~---g--mmmaIrsm~-------PEViIvDEI-Gt~~d~~A~~ta~~-~GVkli~TaHG~~iedl~k 260 (308)
T COG3854 205 PKAE---G--MMMAIRSMS-------PEVIIVDEI-GTEEDALAILTALH-AGVKLITTAHGNGIEDLIK 260 (308)
T ss_pred HHHH---H--HHHHHHHCC-------CCEEEEECC-CCHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHC
T ss_conf 1788---8--999999549-------957998343-64777999999985-4858999504411777650
No 310
>PRK13946 shikimate kinase; Provisional
Probab=83.03 E-value=0.94 Score=25.02 Aligned_cols=49 Identities=35% Similarity=0.429 Sum_probs=36.1
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCC
Q ss_conf 654201024466654257899998987235775069882246-----78765310002456
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGK 148 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~ 148 (341)
+-++|+.| |=-|.||||+.-.||-.|... .+|.|- +|.+++.+|...+.
T Consensus 19 ~kknIvLI--G~mGsGKStvGk~LA~~L~~~-----fiD~D~~IE~~~g~sI~eIF~~~GE 72 (195)
T PRK13946 19 GKRTVVLV--GLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAARMTIPEIFATYGE 72 (195)
T ss_pred CCCCEEEE--CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHHCCCHHHHHHHHCH
T ss_conf 89958998--999998899999999997979-----8988599999809989999998697
No 311
>PRK08118 topology modulation protein; Reviewed
Probab=82.96 E-value=1 Score=24.80 Aligned_cols=33 Identities=42% Similarity=0.558 Sum_probs=22.2
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 42010244666542578999989872357750698822
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
+||. |. |-.|.||||+|-.||..+ |..+.-+|.
T Consensus 2 ~rI~-Ii-G~~GsGKSTlAr~L~~~~---~ip~~~LD~ 34 (167)
T PRK08118 2 KKII-LI-GSGGSGKSTLARQLGEKL---NIPVHHLDA 34 (167)
T ss_pred CEEE-EE-CCCCCCHHHHHHHHHHHH---CCCEEECCC
T ss_conf 6799-98-899987999999999988---969796443
No 312
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=82.88 E-value=3.8 Score=20.95 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=63.5
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEE-EC
Q ss_conf 77758997455644421000000022340267421443113456667776400122114455442024587788665-12
Q gi|254780831|r 201 GQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKY-DL 279 (341)
Q Consensus 201 ~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~-~~ 279 (341)
+.-|.+||-. |..|. .+..+ ....-.+..+.++.+++.+++++ ..-| ...++.+.++ .-
T Consensus 70 ~~P~~Vii~l--GgND~----LRg~~----------~~~~~~NL~~ii~~~~~~g~~vl--L~g~--~~p~n~g~~y~~~ 129 (191)
T PRK10528 70 HQPRWVLVEL--GGNDG----LRGFP----------PQQTEQTLRQIIQDVKAANAQPL--LMQI--RLPANYGRRYNEA 129 (191)
T ss_pred CCCCEEEEEE--CCCCH----HCCCC----------HHHHHHHHHHHHHHHHHCCCCEE--EEEC--CCCCCCCHHHHHH
T ss_conf 7999899984--68434----30899----------89999999999999998899789--9706--5675512667888
Q ss_pred CCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4776589999984797898827998999750288217997799989999999999999983
Q gi|254780831|r 280 FGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFF 340 (341)
Q Consensus 280 fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341)
| .....++|++++++++ |+ ..+......-....+.=||-++.++.||+.+++.|
T Consensus 130 f-~~iy~~lA~e~~v~l~---pf---~l~~v~~~~~~~q~DgiHPN~~G~~~ia~~v~~~L 183 (191)
T PRK10528 130 F-SAIYPKLAKEFDIPLL---PF---FMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQL 183 (191)
T ss_pred H-HHHHHHHHHHHCCCEE---HH---HHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9-9999999998099741---37---88756359755288889959889999999999999
No 313
>KOG2749 consensus
Probab=82.75 E-value=1.3 Score=24.04 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 420102446665425789999898723577506988224678765
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
.|++.| |---+||||++--|--...++|+|...+|+|..-+|+
T Consensus 104 Prv~vV--Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749 104 PRVMVV--GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CEEEEE--CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCE
T ss_conf 779998--9876566789999999998717865389747999724
No 314
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.48 E-value=1.2 Score=24.33 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=30.4
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 4201024466654257899998987235775069882246787
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
.++|+|+ |=-||||++.-++..|.+.|+++.+. .+|..|
T Consensus 112 ~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~~-GNiG~p 150 (450)
T PRK02472 112 APIIGIT---GSNGKTTTTTLIAEMLNAGGQHGLLA-GNIGYP 150 (450)
T ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCC
T ss_conf 9789982---79997319999999999749973999-416764
No 315
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=82.39 E-value=1.9 Score=22.91 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHC------CCCCEEEEEECCCCCCCCCCE
Q ss_conf 20102446665425789999898723------577506988224678765310
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALK------NKGKNVAILDADVYGPSIPKL 142 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala------~~G~~V~liDaDi~~ps~~~~ 142 (341)
..|.-..|--|.|||+++..||+... ..|.+|+.+|+. .+.+..++
T Consensus 19 G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE-~~f~~~Rl 70 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE-GTFRPERL 70 (235)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHH
T ss_conf 87999999999849999999999984247536789629999536-77588999
No 316
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=82.27 E-value=4 Score=20.80 Aligned_cols=41 Identities=32% Similarity=0.497 Sum_probs=30.8
Q ss_pred CCEECCCC-CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446-665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASG-KGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~Sg-KGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
|.|-|+.| =-|.||-.+|+.||.-|..+|++|-.+-.|.|-
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYl 43 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYL 43 (533)
T ss_pred EEEEEECCEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf 089991885036642799999999999779747898326640
No 317
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=82.08 E-value=1.3 Score=24.00 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=59.6
Q ss_pred HHHHHHHHHCC--CCCCCCCEEE-----CCCEEEEEEECC--EEEEEEEECCCCHHHHHH----HHHHHHHHHH-CCCCC
Q ss_conf 99999872033--8479764363-----587655698899--899999966878478999----9999999986-06763
Q gi|254780831|r 7 NQIVDSLKVLS--IPGEKNNIVE-----MQRLSEIFIVHN--TVYLSITVPHTIAHQLQS----LRSNAQQIIQ-NIPTV 72 (341)
Q Consensus 7 ~~I~e~L~~V~--DPel~~dIv~-----lGlI~~I~I~~~--~V~i~l~lt~~~cp~~~~----l~~~i~~~l~-~i~gv 72 (341)
++..+.|+... -|+--...++ |.+...=.=+-+ .-.++.-+.-||+..... =.+.+++.|. .+=|.
T Consensus 337 ~~~~~kle~~~e~~P~~~~k~~~~El~kL~~l~~~SsE~~v~RnYLDwl~~lPW~~~S~~f~n~Dl~~A~~~LD~DHYGL 416 (941)
T TIGR00763 337 EKLKEKLEELKEFLPEEVKKVIEKELTKLELLEPSSSEFTVTRNYLDWLTDLPWGKYSKEFDNLDLKRAKEILDEDHYGL 416 (941)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999987405747746899999999875058833530467999999998377221470266521899999831678888
Q ss_pred C---CEEEECCCCC------CCCCCCCCCCCC-C-CEECCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 4---2355032223------433322234654-2-0102446665425789999898723577506
Q gi|254780831|r 73 K---NAVVTLTENK------NPPQQRNNLNVK-K-FVAVASGKGGVGKSTTVVNIACALKNKGKNV 127 (341)
Q Consensus 73 ~---~v~V~lt~~~------~~~~~~~~~~~~-~-iiav~SgKGGVGKSt~s~nLa~ala~~G~~V 127 (341)
+ +=.+++-+-. .+.++......+ . |++-. |=-|||||+++--+|-||.+.=.|.
T Consensus 417 ~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqIlClv-GPPGVGKTSlg~SIA~ALnRkFvR~ 481 (941)
T TIGR00763 417 KKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQILCLV-GPPGVGKTSLGKSIAKALNRKFVRF 481 (941)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 7730341358889899987640364447788887678720-7269542227899999968804999
No 318
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=82.05 E-value=1.6 Score=23.44 Aligned_cols=116 Identities=17% Similarity=0.322 Sum_probs=60.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC--CCCCCCCCC-------------------CC
Q ss_conf 666542578999989872357750698822467876531000245631--123344576-------------------63
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE--ISDKKFLKP-------------------KE 161 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~--~~~~~~i~p-------------------~~ 161 (341)
|--|.||||+|--+|-. +++.|.++-.|-.- +-..|.|-....+ -..++.|.- .-
T Consensus 28 GPaG~GKT~LA~hvA~~---r~RPV~l~~Gd~eL-~~~DLvG~~~g~~~~kv~DqfihnV~K~~d~~~~~W~D~rLt~Av 103 (265)
T TIGR02640 28 GPAGTGKTTLAMHVARK---RDRPVVLINGDAEL-TTSDLVGSYAGYTRKKVVDQFIHNVVKLEDIVRQNWVDNRLTLAV 103 (265)
T ss_pred CCCCCCHHHHHHHHHHH---CCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 78885568999999973---68968998658232-654423154675222232012111342512200266783578997
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCH
Q ss_conf 2230322333435522100013420247899986752137775899745564442100000002234026742144311
Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLA 240 (341)
Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s 240 (341)
..|..++==.| . ..+ |..+..|...|.+- ++-+||--+.. .....-|--.+|.=++|+..|
T Consensus 104 ~eG~TLVYdEF-~-Rsk------P~~nNVLLSvlEE~--------vL~LPg~~~~~--~Yv~VhP~FR~IfTSNp~EYA 164 (265)
T TIGR02640 104 REGFTLVYDEF-T-RSK------PETNNVLLSVLEEG--------VLELPGKRGES--RYVDVHPEFRVIFTSNPVEYA 164 (265)
T ss_pred HCCCEEEECCC-C-CCC------CHHHHHHHHHHHHH--------HHCCCCCCCCC--CCEEECCCCCEEECCCCCCCC
T ss_conf 56972766475-7-886------20456567555523--------21588878778--722578870246314870105
No 319
>PRK13351 elongation factor G; Reviewed
Probab=81.99 E-value=1.1 Score=24.58 Aligned_cols=10 Identities=60% Similarity=1.012 Sum_probs=5.5
Q ss_pred CCCCCCCHHH
Q ss_conf 4442100000
Q gi|254780831|r 213 GTGDAHLTIA 222 (341)
Q Consensus 213 G~gd~~lsl~ 222 (341)
|.|+.||..+
T Consensus 449 g~GElHLe~~ 458 (687)
T PRK13351 449 GMGELHLEIA 458 (687)
T ss_pred CCCHHHHHHH
T ss_conf 8889999999
No 320
>PRK00698 tmk thymidylate kinase; Validated
Probab=81.80 E-value=1.9 Score=23.04 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=30.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 201024466654257899998987235775069882
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
++|++- |=-|.||||.+--|+-.|.+.|++|.+..
T Consensus 4 ~fIviE-GiDGsGKsTq~~~L~~~L~~~g~~v~~t~ 38 (204)
T PRK00698 4 MFITIE-GIDGAGKSTQIELLAERLEEQGRDVVFTR 38 (204)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 199998-89999899999999999996799789986
No 321
>pfam08419 consensus
Probab=81.64 E-value=0.94 Score=25.00 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHHHHH
Q ss_conf 3465420102446665425789999898
Q gi|254780831|r 91 NLNVKKFVAVASGKGGVGKSTTVVNIAC 118 (341)
Q Consensus 91 ~~~~~~iiav~SgKGGVGKSt~s~nLa~ 118 (341)
.|.-+.||=|.+..||.||||++-.|..
T Consensus 70 ~PddRtI~Wvygp~GgeGKStfak~L~~ 97 (116)
T pfam08419 70 EPDDRTIIWVYGPNGGEGKSTFAKHLGL 97 (116)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9987469999858998664288886420
No 322
>PRK07933 thymidylate kinase; Validated
Probab=81.47 E-value=1.4 Score=23.76 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 4666542578999989872357750698822
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
-|==|.||||.+-.|+-.|.+.|++|.+..-
T Consensus 6 EGiDGsGKSTq~~~L~~~L~~~g~~v~~~re 36 (213)
T PRK07933 6 EGVDGAGKRTLTEALRAALEAAGRSVATLAF 36 (213)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8899998999999999999977990799846
No 323
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=81.43 E-value=0.78 Score=25.55 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=34.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCEECCCCCC
Q ss_conf 201024466654257899998987235775069882246-----787653100024563
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKLLKISGKV 149 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~lg~~~~~ 149 (341)
+=||.. |==|.||||+---||-.|.-. .+|.|- .|.+++.+|-..++.
T Consensus 134 ~rIaLI-GlmGaGKSTvGr~LA~~Lg~p-----FvDlD~~IEk~aG~sI~eIFa~~GE~ 186 (304)
T PRK08154 134 PRIALI-GLRGAGKSTLGRMLAARLGVP-----FVELNREIEREAGLSVSEIFALYGQE 186 (304)
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHHCCCHHHHHHHHCHH
T ss_conf 847988-999998889999999995989-----77877999999299999999986889
No 324
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.03 E-value=2 Score=22.76 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
.||+|+ |=.|-||||++-.|...|... ++.++-.|=|-
T Consensus 9 iiIgIa-G~SgSGKTTv~~~l~~~~~~~--~~~~I~~D~YY 46 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYY 46 (218)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHCCC--CCEEEECCCCC
T ss_conf 999986-798778899999999982867--52476522320
No 325
>KOG4230 consensus
Probab=80.75 E-value=1.4 Score=23.92 Aligned_cols=43 Identities=33% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCC
Q ss_conf 4466654257899998987235775069882246787653100024
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKIS 146 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~ 146 (341)
+---=|.||||++..|-.||..+|+-.. |.+.-||..--||+.
T Consensus 374 tptp~gegkst~t~glvqal~~l~k~~i---acvrqpsqgptfgvk 416 (935)
T KOG4230 374 TPTPLGEGKSTTTAGLVQALGALGKLAI---ACVRQPSQGPTFGVK 416 (935)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCE---EEECCCCCCCCCCCC
T ss_conf 7777788853247899999875077401---341377769854535
No 326
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=80.75 E-value=1.8 Score=23.20 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=27.4
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 420102446665425789999898723577506988224
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+++|+|+ |-=|+|||.+|..||-.+. .-++-||
T Consensus 4 ~~ii~i~-GpTasGKs~la~~la~~~~-----~eIIsaD 36 (304)
T PRK00091 4 PKLIVLV-GPTASGKTALAIELAKRLN-----GEIISVD 36 (304)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHCC-----CEEEEEC
T ss_conf 9779998-9886589999999999879-----9899412
No 327
>PTZ00301 uridine kinase; Provisional
Probab=80.63 E-value=2.3 Score=22.38 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=30.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-C-CEEEEEECCCCC
Q ss_conf 2010244666542578999989872357-7-506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-G-KNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G-~~V~liDaDi~~ 136 (341)
.||+|+ |=-|-||||+|.+|.-.|... | .+|.++-.|-|-
T Consensus 4 ~iIgIa-GgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 899996-887678999999999998761499807998367667
No 328
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=80.60 E-value=4.6 Score=20.42 Aligned_cols=13 Identities=15% Similarity=0.509 Sum_probs=8.7
Q ss_pred CCCCCEEEEECCC
Q ss_conf 3777589974556
Q gi|254780831|r 200 WGQLDFLLIDMPP 212 (341)
Q Consensus 200 w~~~D~liiD~pp 212 (341)
.++-...++.+||
T Consensus 479 ~ge~~pfvmELPp 491 (772)
T PRK09554 479 RGEASPFVMELPV 491 (772)
T ss_pred CCCCCCCEEECCC
T ss_conf 7999974773798
No 329
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.45 E-value=4.1 Score=20.72 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
-++.|- |--|.|||-++--+++.+-..|++|..+-.-.
T Consensus 29 sL~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~ 66 (235)
T COG2874 29 SLILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66 (235)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECH
T ss_conf 699998-88985488999999998870895489998403
No 330
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.39 E-value=2 Score=22.79 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=25.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 420102446665425789999898723577506
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNV 127 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V 127 (341)
+++|||+ |==||||+|.-++..|...|+++
T Consensus 108 ~~~IaVt---GTnGKTTtT~ll~~il~~~g~~~ 137 (459)
T PRK00421 108 RTSIAVA---GTHGKTTTTSLLAHVLAEAGLDP 137 (459)
T ss_pred CCEEEEE---CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9649997---78886118999999999769987
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=80.34 E-value=1.2 Score=24.42 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6665425789999898723577
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKG 124 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G 124 (341)
|.=--||||+++.+...|++.|
T Consensus 19 GHvdHGKTTLtaAit~~la~~~ 40 (394)
T COG0050 19 GHVDHGKTTLTAAITTVLAKKG 40 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHC
T ss_conf 1424763528999999998632
No 332
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=80.33 E-value=1.7 Score=23.26 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 5425789999898723577506988
Q gi|254780831|r 106 GVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 106 GVGKSt~s~nLa~ala~~G~~V~li 130 (341)
|.|||.++..++..+.+.++|++++
T Consensus 28 GsGKT~~~~~~i~~~~~~~~~~lvl 52 (103)
T pfam04851 28 GSGKTLTAAKLIARLLKGKKKVLFL 52 (103)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9987999999999998469929999
No 333
>PRK12739 elongation factor G; Reviewed
Probab=79.69 E-value=1.5 Score=23.69 Aligned_cols=10 Identities=50% Similarity=0.909 Sum_probs=5.9
Q ss_pred CCCCCCCHHH
Q ss_conf 4442100000
Q gi|254780831|r 213 GTGDAHLTIA 222 (341)
Q Consensus 213 G~gd~~lsl~ 222 (341)
|.|+.||..+
T Consensus 452 g~GElHLe~~ 461 (693)
T PRK12739 452 GMGELHLDII 461 (693)
T ss_pred ECCHHHHHHH
T ss_conf 2599999999
No 334
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=79.67 E-value=1.4 Score=23.89 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred HCCCCCCEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 21377758997455644421000000-022340267421443113456667776400122114455442
Q gi|254780831|r 198 VVWGQLDFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 198 ~~w~~~D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
..|.++-|-+|||| |--|-.-.+.. ....|++++|.--..--....++.+.+++.+++|++ +++|.
T Consensus 63 ~~~~~~~i~~IDtP-GH~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~i-v~iNK 129 (192)
T cd01889 63 PGEENLQITLVDCP-GHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNK 129 (192)
T ss_pred CCCCCEEEEEEECC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 46774589998779-838899888888743265279998788887899999999998589979-99974
No 335
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.57 E-value=2.3 Score=22.38 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=28.4
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 0102446665425789999898723577506988224678
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
||+|+ |--|-||||++-.+.-.|.+. +|.++-.|=|-
T Consensus 1 IIgVa-G~SGSGKTTv~~~i~~ifg~~--~v~vI~~D~Yh 37 (273)
T cd02026 1 IIGVA-GDSGCGKSTFLRRLTSLFGSD--LVTVICLDDYH 37 (273)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 98997-888786999999999985848--76999657778
No 336
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=79.51 E-value=5 Score=20.19 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=19.2
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 542010244666542578999989872357
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
.+-||||= |--|.||||+|-.||-.|.-.
T Consensus 283 ~~~IIAID-GPAgSGKSTvAK~lA~~L~~~ 311 (512)
T PRK13477 283 RRPIIAID-GPAGAGKSTVTRAVAKKLGLL 311 (512)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHCCC
T ss_conf 88779986-787578789999999981996
No 337
>CHL00181 cbbX CbbX; Provisional
Probab=79.49 E-value=1.3 Score=24.02 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 1024466654257899998987235775
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGK 125 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~ 125 (341)
-.|..|--|+||||+|--+|-.|.+.|.
T Consensus 61 h~vF~GnPGTGKTTVARl~a~il~~lG~ 88 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYRLGY 88 (287)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 3888789986799999999999998699
No 338
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=79.35 E-value=1.8 Score=23.09 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=29.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCC
Q ss_conf 2010244666542578999989872357-75069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi 134 (341)
..|-++ +.-|+|||+++.|+|..++.. .+.|+++=.-.
T Consensus 197 dLiilA-aRP~mGKTafalnia~n~a~~~~~~v~iFSLEM 235 (435)
T COG0305 197 DLIIVA-ARPGMGKTALALNIALNAAADGRKPVAIFSLEM 235 (435)
T ss_pred CEEEEC-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 779971-689997589999999999985589759998267
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=79.14 E-value=1.3 Score=24.16 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 01024466654257899998987235
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKN 122 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~ 122 (341)
+|+| ||+-|-||||+|.-||--|.-
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEE-CCCCCCCCHHHHHHHHHHHCC
T ss_conf 7996-179999702799999998297
No 340
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=79.00 E-value=1.7 Score=23.35 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 5420102446665425789999898723
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
+..+|+|. |-=|+||||+|--||--|.
T Consensus 3 ~~~~IvI~-G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 3 VAMVIVIE-GMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHC
T ss_conf 66089984-4644687899999998838
No 341
>COG1162 Predicted GTPases [General function prediction only]
Probab=78.91 E-value=0.35 Score=27.83 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=12.7
Q ss_pred EECCCCCCCCCHHHHHHHHH
Q ss_conf 10244666542578999989
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIA 117 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa 117 (341)
|.|.-|--||||||+.=-|+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred EEEEECCCCCCHHHHHHHHC
T ss_conf 49998888776999887417
No 342
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=78.50 E-value=1.4 Score=23.89 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 777589974556444210000000-22340267421443113456667776400122114455442
Q gi|254780831|r 201 GQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 201 ~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
..+=+-+|||| |--|-.-.+... ...|++++|.--..--....++.+.++.+.++|++ +++|.
T Consensus 69 k~~~inlIDTP-GH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~i-lviNK 132 (213)
T cd04167 69 KSYLFNIIDTP-GHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINK 132 (213)
T ss_pred CEEEEEEEECC-CCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 50578778898-724179999988863776799998788875779999999998699989-99988
No 343
>PRK00625 shikimate kinase; Provisional
Probab=78.40 E-value=1.8 Score=23.13 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC--C---CC----CCCCCEECCCCC
Q ss_conf 6665425789999898723577506988224--6---78----765310002456
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD--V---YG----PSIPKLLKISGK 148 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaD--i---~~----ps~~~~lg~~~~ 148 (341)
|==|.||||+.-.||-.|... .+|.| | ++ .|+..+|...+.
T Consensus 7 G~mGsGKStiGk~LA~~l~~~-----FvD~D~~Ie~~~~~~i~~Si~eIf~~~GE 56 (173)
T PRK00625 7 GLPTVGKTSFGKALAKFLSLP-----FFDTDDLIVSNYHGALYSSPKEIYQAYGE 56 (173)
T ss_pred CCCCCCHHHHHHHHHHHHCCC-----EEECHHHHHHHHCCCCCCCHHHHHHHHCH
T ss_conf 999998899999999993999-----57749999998686523569999997189
No 344
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=78.31 E-value=1.7 Score=23.30 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=18.7
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 010244666542578999989872
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACAL 120 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~al 120 (341)
||+|- |-=|+||||++-.||-.|
T Consensus 1 iI~IE-GnIG~GKTTl~~~La~~l 23 (219)
T cd02030 1 VITVD-GNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHH
T ss_conf 98996-785679999999999985
No 345
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.21 E-value=5.4 Score=19.93 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 6665425789999898723577506988224
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|-|=||=+| |..||+.|+.|..+|-|
T Consensus 7 GtGYVGLv~-----g~~lA~~GHeVv~vDid 32 (414)
T COG1004 7 GTGYVGLVT-----GACLAELGHEVVCVDID 32 (414)
T ss_pred CCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 885568878-----99998709848999578
No 346
>PRK09354 recA recombinase A; Provisional
Probab=77.94 E-value=2.9 Score=21.75 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=40.0
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCEECCC
Q ss_conf 54201024466654257899998987235775069882246-787653100024
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-YGPSIPKLLKIS 146 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-~~ps~~~~lg~~ 146 (341)
..||+-++ |.-..||||++........+.|..++.+|+.- +-|+-..-+|++
T Consensus 59 ~GRivEi~-G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~lGVd 111 (350)
T PRK09354 59 KGRIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVD 111 (350)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCC
T ss_conf 87089998-898777999999999999975994799960002798899984977
No 347
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=77.94 E-value=2.6 Score=22.04 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2010244666542578999989872357750698822
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
++|+|+ |==||||++--++..|.+.|++++++-.
T Consensus 112 ~vigVT---GTNGKTTt~~~i~~il~~~g~~~~~iGT 145 (953)
T PRK11929 112 SVVAVT---GTNGKTSCAQWLAQMLTRLGKPCGSIGT 145 (953)
T ss_pred CEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 789997---9997999999999999867998899832
No 348
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=77.88 E-value=3.1 Score=21.58 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=29.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 46665425789999898723577506988224
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|+-|-|||.+.-.|....-..|-+|.++|..
T Consensus 480 ~g~SGsGKSf~~q~l~~~~~~~G~~V~IID~G 511 (864)
T PRK13721 480 CGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMG 511 (864)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 82899868999999999998579979999699
No 349
>PRK12338 hypothetical protein; Provisional
Probab=77.87 E-value=1.7 Score=23.32 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=24.0
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0102446665425789999898723577506988224
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+|-...|--||||||+|.-||.-| |-+. ++-.|
T Consensus 5 liILiGGtSGvGKSTlAseLAsRL---gI~t-vIsTD 37 (320)
T PRK12338 5 YVILIGSASGIGKSTIASEVARRL---NIKH-LIETD 37 (320)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCE-EECCH
T ss_conf 799970688876888999999851---9871-10334
No 350
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=77.81 E-value=1.8 Score=23.10 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEE---ECCCCCC----CCCC-------CCCCC--CCCCEECCCCCCCCCHHHHHH
Q ss_conf 847899999999999860676342355---0322234----3332-------22346--542010244666542578999
Q gi|254780831|r 51 IAHQLQSLRSNAQQIIQNIPTVKNAVV---TLTENKN----PPQQ-------RNNLN--VKKFVAVASGKGGVGKSTTVV 114 (341)
Q Consensus 51 ~cp~~~~l~~~i~~~l~~i~gv~~v~V---~lt~~~~----~~~~-------~~~~~--~~~iiav~SgKGGVGKSt~s~ 114 (341)
....+..+.-++++.|++- ++.-+.. .-+.+.- -+.. +...+ ...||.+. |--||||||+|.
T Consensus 30 ~p~~Ay~iA~~i~e~L~~~-~~~~v~~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIG-GasGVGkStIA~ 107 (299)
T COG2074 30 DPDLAYSIAIEIQEELKKE-GIRLVTKDEIREVYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIG-GASGVGKSTIAG 107 (299)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHH
T ss_conf 8258999999999999757-97276199999999999873287999999999998615787599961-788777257999
Q ss_pred HHHHHHCCCCCEEEEEECC
Q ss_conf 9898723577506988224
Q gi|254780831|r 115 NIACALKNKGKNVAILDAD 133 (341)
Q Consensus 115 nLa~ala~~G~~V~liDaD 133 (341)
-+|.-|.=. -++-.|
T Consensus 108 ElA~rLgI~----~visTD 122 (299)
T COG2074 108 ELARRLGIR----SVISTD 122 (299)
T ss_pred HHHHHCCCC----EEECCH
T ss_conf 999972986----100424
No 351
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=77.73 E-value=1.5 Score=23.71 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 13777589974556444210000000-22340267421443113456667776400122114455442
Q gi|254780831|r 199 VWGQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 199 ~w~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
.|.++=+-+|||| |--|-.-.+... ...|++++|.--..--....++.+.++.+.++|++ +++|.
T Consensus 69 ~~~~~~inlIDTP-GH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~i-l~iNK 134 (222)
T cd01885 69 DGNEYLINLIDSP-GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPV-LVINK 134 (222)
T ss_pred CCCCEEEEEEECC-CHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 6886389997288-569899999999985681799610457857789999999998599979-99989
No 352
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=77.55 E-value=4 Score=20.81 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC---------------------CCCCCCCCEECCCCCCCCC
Q ss_conf 7847899999999999860676342355032223433322---------------------2346542010244666542
Q gi|254780831|r 50 TIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQR---------------------NNLNVKKFVAVASGKGGVG 108 (341)
Q Consensus 50 ~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~---------------------~~~~~~~iiav~SgKGGVG 108 (341)
+..+....+++-+ +-+.++||-+.-...++-..+...-+ ...+.+--|.+.-|--|||
T Consensus 284 ~~SaE~~ViRnYl-Dwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVG 362 (782)
T COG0466 284 PMSAEATVIRNYL-DWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVG 362 (782)
T ss_pred CCCCHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 9991688998999-999828876554213229999987443556711689999999999986146788579997899887
Q ss_pred HHHHHHHHHHHHCCCCCEEE
Q ss_conf 57899998987235775069
Q gi|254780831|r 109 KSTTVVNIACALKNKGKNVA 128 (341)
Q Consensus 109 KSt~s~nLa~ala~~G~~V~ 128 (341)
||++.-.+|-||.+.=.|..
T Consensus 363 KTSLgkSIA~al~RkfvR~s 382 (782)
T COG0466 363 KTSLGKSIAKALGRKFVRIS 382 (782)
T ss_pred CHHHHHHHHHHHCCCEEEEE
T ss_conf 01189999999589779995
No 353
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=77.46 E-value=2.8 Score=21.83 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=30.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 201024466654257899998987235775069882
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
++|++- |==|.||||.+--|+-.|.+.|++|.+.=
T Consensus 4 ~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 299997-88889889999999999998298079986
No 354
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=77.36 E-value=2.2 Score=22.58 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..+|--||||||++--||-+|...
T Consensus 42 lf~g~rg~gkt~~ar~~a~~lnc~ 65 (663)
T PRK08770 42 LFTGTRGVGKTTIARIFAKSLNCE 65 (663)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 622799888889999999986789
No 355
>PRK07773 replicative DNA helicase; Validated
Probab=77.33 E-value=5.7 Score=19.77 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCC
Q ss_conf 2010244666542578999989872357-75069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi 134 (341)
..|.|+ |.-|+|||+++.|+|...|.. +..|+++-+..
T Consensus 204 ~l~i~a-~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLEM 242 (868)
T PRK07773 204 QMIIVA-ARPGVGKSTLGLDFARSCSIRHRLASVIFSLEM 242 (868)
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 679998-289777778999999999986599658973056
No 356
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=76.95 E-value=2.3 Score=22.46 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=28.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20102446665425789999898723577506988
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
+=|.|+ |--|-||||++..||--++.+|+=|--+
T Consensus 264 eGILIA-G~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 264 EGILIA-GAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 646995-6999974689999999998669688632
No 357
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=76.73 E-value=3.5 Score=21.17 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=25.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 010244666542578999989872357750698822
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
+|+++ |-=|.||||++-.|+-.| .+..+.+++.
T Consensus 1 ~I~I~-G~~gsGKsT~a~~l~~~l--~~~~~~~~~~ 33 (69)
T cd02019 1 IIAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHH--CCCEEEEEEH
T ss_conf 97883-688887258999999995--8954999631
No 358
>KOG2004 consensus
Probab=76.53 E-value=2 Score=22.87 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEE---EE-CCCCCC
Q ss_conf 542010244666542578999989872357750698---82-246787
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAI---LD-ADVYGP 137 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~l---iD-aDi~~p 137 (341)
++--|...+|--|||||+++-.+|.||.+.=+|.-+ -| |||.|+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
T ss_conf 788379986899877321899999984874699853663427764254
No 359
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=76.43 E-value=1.6 Score=23.49 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 44666542578999989872357
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..|.-|+|||+++-.||..|++.
T Consensus 3 l~G~~G~GKS~~a~~la~~~~~~ 25 (105)
T pfam00910 3 LYGPPGCGKSTLAKYLARALLDH 25 (105)
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
T ss_conf 97999898899999999999998
No 360
>KOG1805 consensus
Probab=76.35 E-value=2.2 Score=22.55 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=28.5
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 024466654257899998987235775069882
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
+.-=|=-|+||||+-+-|--.|...|+||+|.-
T Consensus 688 ~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLts 720 (1100)
T KOG1805 688 ALILGMPGTGKTTTISLLIKILVALGKKVLLTS 720 (1100)
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 203269989812259999999997388189985
No 361
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=76.27 E-value=2.2 Score=22.53 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 665425789999898723577506988224
Q gi|254780831|r 104 KGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 104 KGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
=|+=||||+--.||-.+.+.|+||++--.-
T Consensus 5 VGaGGKTS~m~~LA~e~~~~G~~VlvTTTT 34 (232)
T TIGR03172 5 VGAGGKTSTMFWLAAEYRKEGYRVLVTTTT 34 (232)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 889879999999999998769909998896
No 362
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=75.91 E-value=2.1 Score=22.64 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEC----CCC----CC-CCCC------CCCCCC-CCCEECCCCCCCCCHHHHHH
Q ss_conf 84789999999999986067634235503----222----34-3332------223465-42010244666542578999
Q gi|254780831|r 51 IAHQLQSLRSNAQQIIQNIPTVKNAVVTL----TEN----KN-PPQQ------RNNLNV-KKFVAVASGKGGVGKSTTVV 114 (341)
Q Consensus 51 ~cp~~~~l~~~i~~~l~~i~gv~~v~V~l----t~~----~~-~~~~------~~~~~~-~~iiav~SgKGGVGKSt~s~ 114 (341)
....+..|..+++..|..- ++..+..+- +.. +. +... +..... +-+|-.-.|--||||||+|.
T Consensus 202 ~P~~Ay~iA~eie~~L~~~-~~~~i~~~elr~~v~~~L~~~~~~~~A~rY~lwR~ir~~~~PiiILIGGaSGvGKSTlAs 280 (492)
T PRK12337 202 APDVARKVARVTQRDLRGS-GDRVVRRDEIREKVEALLRDEVGPDVSARYRLLRVLRKPPRPLHVLLGGVSGTGKSVLAA 280 (492)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 8889999999999999865-887970999999999999873038899999999997356887699960788866888999
Q ss_pred HHHHHHCCCCCEEEEEECC
Q ss_conf 9898723577506988224
Q gi|254780831|r 115 NIACALKNKGKNVAILDAD 133 (341)
Q Consensus 115 nLa~ala~~G~~V~liDaD 133 (341)
-||.-| |-+. ++-.|
T Consensus 281 eLA~RL---GI~~-VIsTD 295 (492)
T PRK12337 281 ELAYRL---GITR-VVPTD 295 (492)
T ss_pred HHHHHH---CCCC-CCCCH
T ss_conf 999960---9881-02544
No 363
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=75.06 E-value=2 Score=22.77 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=54.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCE-----EEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 2010244666542578999989872357750-----69882246787653100024563112334457663223032233
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKN-----VAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSM 170 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~-----V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~ 170 (341)
..-....|.-|+||||++..+|-.|.+.||- |.+---|+-| .+.|-..+.+ +.+.--..+|+-++.-
T Consensus 58 ~lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trddlvG----qy~GhtaPkt----ke~lk~a~GGvlfide 129 (284)
T TIGR02880 58 SLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG----QYIGHTAPKT----KEVLKRAMGGVLFIDE 129 (284)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHH----HHHCCCCCHH----HHHHHHHCCCEEEEEC
T ss_conf 3267751689872489999999999871540036267853001311----2212577226----8999874287366422
Q ss_pred CC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 34-355221000134202478999867521377758997455644421
Q gi|254780831|r 171 AS-LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA 217 (341)
Q Consensus 171 g~-l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~ 217 (341)
.| +-.+++.--+ | ..+++-+|...+-..-|.++|=. |..|-
T Consensus 130 ayyly~P~nerdy-G---~eaieillq~men~r~~lvvi~a--Gy~~r 171 (284)
T TIGR02880 130 AYYLYRPDNERDY-G---QEAIEILLQVMENQRDDLVVILA--GYKDR 171 (284)
T ss_pred HHHHCCCCCCCHH-H---HHHHHHHHHHHHCCCCCEEEEEE--CCHHH
T ss_conf 0332177641022-3---79999999987236553788871--70788
No 364
>COG3903 Predicted ATPase [General function prediction only]
Probab=75.00 E-value=2 Score=22.77 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=27.5
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCC--EEEEEECC
Q ss_conf 54201024466654257899998987235775--06988224
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGK--NVAILDAD 133 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~--~V~liDaD 133 (341)
-+|-.+.+ |-|||||+|+..+.|- ++.+| -|..+|+-
T Consensus 13 ~~RlvtL~-g~ggvgkttl~~~~a~--~~~~~~~~v~~vdl~ 51 (414)
T COG3903 13 ALRLVTLT-GAGGVGKTTLALQAAH--AASEYADGVAFVDLA 51 (414)
T ss_pred HHHEEEEE-CCCCCCEEHHHHHHHH--HHHHCCCCEEEEECC
T ss_conf 41012465-1573000001655676--765334544442124
No 365
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=74.96 E-value=2.9 Score=21.71 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=9.4
Q ss_pred CCCCCEEEEECCCCCC
Q ss_conf 3777589974556444
Q gi|254780831|r 200 WGQLDFLLIDMPPGTG 215 (341)
Q Consensus 200 w~~~D~liiD~ppG~g 215 (341)
|++..+.++||| |..
T Consensus 34 ~~~~~i~liDTP-Gi~ 48 (106)
T pfam01926 34 LDGKQIILVDTP-GII 48 (106)
T ss_pred ECCEEEEEEECC-CCC
T ss_conf 899889998378-732
No 366
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=74.83 E-value=5.2 Score=20.08 Aligned_cols=51 Identities=31% Similarity=0.463 Sum_probs=42.4
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC------CCCCCCCCEECCCCC
Q ss_conf 0102446665425789999898723577506988224------678765310002456
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD------VYGPSIPKLLKISGK 148 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD------i~~ps~~~~lg~~~~ 148 (341)
=+.++ |-=|+||||.---|-....++|.|..+.|.- .|.|..+++||--+.
T Consensus 187 H~li~-GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~Fv~~FY~p~~DiILNPfDa 243 (732)
T PRK13700 187 NFCLH-GTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNPLDA 243 (732)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCEEECCHHH
T ss_conf 26774-6888889999999999999729958999399853397639888865482010
No 367
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=74.80 E-value=3.1 Score=21.56 Aligned_cols=27 Identities=37% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 654257899998987235775069882
Q gi|254780831|r 105 GGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 105 GGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
|=.||||++.-|+..|.+.|+++...-
T Consensus 3 GT~GKTTt~~ml~~iL~~~g~~~~~~g 29 (188)
T pfam08245 3 GTNGKTTTTELIAALLSAAGGVVGTGG 29 (188)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 758689999999999983899899838
No 368
>pfam09650 PHA_gran_rgn Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn). Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins found at the surface of PHA granules. These proteins have so far been found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=74.72 E-value=6.4 Score=19.46 Aligned_cols=45 Identities=0% Similarity=0.104 Sum_probs=38.5
Q ss_pred CEEECCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 436358765569889989999996687847899999999999860
Q gi|254780831|r 24 NIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQN 68 (341)
Q Consensus 24 dIv~lGlI~~I~I~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~ 68 (341)
++--.|.-..+.+.++.+.+.+.|+..-.|++..|+++|++.|.+
T Consensus 41 ~F~~~Gv~G~l~v~~~~v~v~i~Lg~ll~~fkg~Ie~eIe~~LD~ 85 (87)
T pfam09650 41 SFKRSGVKGTLHVTEDKIRVDLKLGFLLSAFKGRIEQEIEKNLDK 85 (87)
T ss_pred EEEECCCCEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997177546999827779999992888887676899999998872
No 369
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=74.46 E-value=5.5 Score=19.89 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.1
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 666542578999989
Q gi|254780831|r 103 GKGGVGKSTTVVNIA 117 (341)
Q Consensus 103 gKGGVGKSt~s~nLa 117 (341)
|+--|||||+---|.
T Consensus 3 G~pNvGKSTL~N~L~ 17 (158)
T cd01879 3 GNPNVGKTTLFNALT 17 (158)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 989888999999995
No 370
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=74.39 E-value=1.8 Score=23.09 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEECCEE---EEEEEECCCCHHHHHHHHHHHHHHHHC------CC-
Q ss_conf 96202899999872033847976436358765569889989---999996687847899999999999860------67-
Q gi|254780831|r 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTV---YLSITVPHTIAHQLQSLRSNAQQIIQN------IP- 70 (341)
Q Consensus 1 Ms~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~~~~V---~i~l~lt~~~cp~~~~l~~~i~~~l~~------i~- 70 (341)
|-++|-.+|-+++..=.. +.|+ .|.+|.++-.+| ++=+.+......-.+.+.+.+++-... ++
T Consensus 1 m~~~~l~~ia~~~~g~l~---~~d~----~i~~i~~DSR~v~~g~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~~~~~~~ 73 (452)
T PRK10773 1 MISVTLSQLADILNAELQ---GADI----TIDAVTTDTRKVTPGCLFVALKGERFDAHDFADQAKAAGAGALLVSRPLDI 73 (452)
T ss_pred CCCCCHHHHHHHHCCEEE---CCCC----CEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 964769999998699998---8981----577899658717999889994479899799999999869989998476689
Q ss_pred CCCCEEEECCCCCCCCCC-----CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 634235503222343332-----22346542010244666542578999989872357750698
Q gi|254780831|r 71 TVKNAVVTLTENKNPPQQ-----RNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAI 129 (341)
Q Consensus 71 gv~~v~V~lt~~~~~~~~-----~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~l 129 (341)
++..+.|.=+ ...-.. .... -.++|+|+ |-.||||++--++..|++.|+.+..
T Consensus 74 ~~~~i~V~d~--~~al~~la~~~~~~~-~~~vIgIT---GSnGKTTtk~~i~~iL~~~g~~~~t 131 (452)
T PRK10773 74 DLPQLIVKDT--RLAFGQLAAWVRQQV-PARVVALT---GSSGKTSVKEMTAAILSQCGNTLYT 131 (452)
T ss_pred CCCEEEECCH--HHHHHHHHHHHHHCC-CCCEEEEE---ECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9998998999--999999999875159-97589999---1699625999999999972884124
No 371
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=74.33 E-value=2.4 Score=22.31 Aligned_cols=32 Identities=34% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.+|+|+ |.=|-||||++--| .+.|+.| +|||-
T Consensus 3 ~~IgiT-G~igsGKStv~~~l----~~~G~~v--idaD~ 34 (199)
T PRK00081 3 LIIGLT-GGIGSGKSTVANIF----AELGVPV--IDADK 34 (199)
T ss_pred EEEEEE-CCCCCCHHHHHHHH----HHCCCCE--EEHHH
T ss_conf 899957-88877799999999----9889939--96379
No 372
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=74.25 E-value=2 Score=22.81 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=17.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHH
Q ss_conf 0102446665425789999898
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIAC 118 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ 118 (341)
.+-|.||.-||||||+.-.|=-
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~ 26 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLE 26 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3999989988888999999986
No 373
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=74.20 E-value=2.3 Score=22.38 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.8
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0244666542578999989872357
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
-..||--||||||++--||-+|...
T Consensus 41 ylf~G~rGvGKTt~Ari~Ak~lNC~ 65 (704)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCE 65 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 7502789878889999999996799
No 374
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.07 E-value=2.4 Score=22.24 Aligned_cols=34 Identities=18% Similarity=0.449 Sum_probs=30.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|++.|+.+=+|.|+.+ |..|++.|.+|.+.|-|-
T Consensus 6 Kv~lITGas~GIG~ai-----A~~~A~~Ga~Vii~~r~~ 39 (227)
T PRK08862 6 SIILITSAGSVLGRTI-----SCHFARLGATLILCDQDQ 39 (227)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCH
T ss_conf 9999979887999999-----999998799999996999
No 375
>PRK08324 short chain dehydrogenase; Validated
Probab=74.01 E-value=3.1 Score=21.60 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 4201024466654257899998987235775069882246
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
.|+..|+.|=||.|+.+ |.+|++.|.+|.+.|-|-
T Consensus 421 GKVALVTGga~GIG~A~-----A~~fa~eGA~Vvl~D~~~ 455 (676)
T PRK08324 421 GKVALVTGAAGGIGLAT-----AKRLAAEGACVVLADIDE 455 (676)
T ss_pred CCEEEEECCCCCHHHHH-----HHHHHHCCCEEEEEECCH
T ss_conf 98799947988162999-----999998799899995888
No 376
>KOG1298 consensus
Probab=73.92 E-value=2.8 Score=21.80 Aligned_cols=36 Identities=28% Similarity=0.581 Sum_probs=27.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
.+|-|.-|=+| .-||++|++.|+||.++.-|+..|.
T Consensus 47 DvIIVGAGV~G-------saLa~~L~kdGRrVhVIERDl~EPd 82 (509)
T KOG1298 47 DVIIVGAGVAG-------SALAYALAKDGRRVHVIERDLSEPD 82 (509)
T ss_pred CEEEECCCCHH-------HHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 47998886227-------8999998507857999963455616
No 377
>PRK06851 hypothetical protein; Provisional
Probab=73.73 E-value=7 Score=19.18 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=35.8
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE
Q ss_conf 5420102446665425789999898723577506988224678765310
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKL 142 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~ 142 (341)
.+||+.+- |=-|+||||+--.++.++.++|+.|=.+-|-.-.-|++.+
T Consensus 30 ~~ri~ilK-GGpGtGKStlmK~ig~~~~~~GydVE~~hcssD~~SlDGv 77 (368)
T PRK06851 30 ANRIFILK-GGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGV 77 (368)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE
T ss_conf 12799996-8999778999999999999689837999758998864359
No 378
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=73.67 E-value=4.8 Score=20.27 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=21.7
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 46542010244666542578999989872
Q gi|254780831|r 92 LNVKKFVAVASGKGGVGKSTTVVNIACAL 120 (341)
Q Consensus 92 ~~~~~iiav~SgKGGVGKSt~s~nLa~al 120 (341)
.-+.+=++|-||=-|+||||+.+.|=.+|
T Consensus 158 ~Al~~~~~vIsGGPGTGKTttV~~lLa~l 186 (607)
T PRK10875 158 VALTRRISVISGGPGTGKTTTVAKLLAAL 186 (607)
T ss_pred HHHHCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98755778996799987788999999999
No 379
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=73.66 E-value=2.1 Score=22.74 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-------CEEEEEECCCCC
Q ss_conf 46665425789999898723577-------506988224678
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKG-------KNVAILDADVYG 136 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G-------~~V~liDaDi~~ 136 (341)
.||=|||||.+|-.+.-.|.+.. -.|.-|+|+.+.
T Consensus 49 YGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~ 90 (383)
T TIGR02928 49 YGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILD 90 (383)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 788898788999999999999862269971589997785468
No 380
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability . This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). ; GO: 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process.
Probab=73.61 E-value=2.7 Score=21.91 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=34.7
Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 2010244-6665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
-++.|.+ .-||.|||.+..-||-+|.++|.+++++.---.+
T Consensus 33 ~~~~vGn~~~GG~Gktp~v~wl~~~l~~~g~~~~~~~~gy~~ 74 (342)
T TIGR00682 33 VVISVGNLSVGGTGKTPVVLWLAELLKDRGLRVGVLSRGYGS 74 (342)
T ss_pred EEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 367623244257875148787899998569818998535455
No 381
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.35 E-value=3.1 Score=21.56 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.1
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 02446665425789999898723577
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKG 124 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G 124 (341)
-..||--||||||++--||-+|...+
T Consensus 41 ylf~G~rGvGKTt~ari~Ak~lnc~~ 66 (721)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCTG 66 (721)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 75027998889899999999976899
No 382
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=73.22 E-value=3.7 Score=21.07 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
+.+-+ .|..|.|||.+.--++-.+.+.|+++..+++.-
T Consensus 39 ~~l~i-~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~ 76 (226)
T TIGR03420 39 RFLYL-WGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHH
T ss_conf 86999-899999889999999999862699579952999
No 383
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.16 E-value=3.2 Score=21.47 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=41.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999668784789999999999986067634235503222343332223465420102446665425789999898723
Q gi|254780831|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 42 ~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala 121 (341)
.+++.+.+|+-|....+.+..++. +.++ ++-.. . ..++|+|+ |--||||++.-++..|.
T Consensus 54 ~~d~vv~SPGI~~~~p~~~~a~~i------~sei--el~~~-~---------~~~~I~IT---GTNGKsTtt~li~~iL~ 112 (401)
T PRK03815 54 KSDLEIPSPGIPPSHPLIQKAKNL------ISEY--DYFYS-F---------MPFSIWIS---GTNGKTTTTQMLTHLLE 112 (401)
T ss_pred HCCEEEECCCCCCCCHHHHHHHHH------HHHH--HHHHH-C---------CCCCEEEE---CCCCHHHHHHHHHHHHH
T ss_conf 286899899859987999987454------1499--99985-2---------78748998---47777899999999998
Q ss_pred CCCCEEEEEECCCCCC
Q ss_conf 5775069882246787
Q gi|254780831|r 122 NKGKNVAILDADVYGP 137 (341)
Q Consensus 122 ~~G~~V~liDaDi~~p 137 (341)
+.|..+ -.+|+-|
T Consensus 113 ~~g~~~---~GNIG~P 125 (401)
T PRK03815 113 DFGAVS---GGNIGTP 125 (401)
T ss_pred HCCCCE---ECCCCHH
T ss_conf 669813---0416643
No 384
>PRK08945 short chain dehydrogenase; Provisional
Probab=73.12 E-value=3.6 Score=21.08 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.+-+|.|+.+ |..|++.|.+|.+++-+
T Consensus 14 K~~lITGas~GIG~ai-----A~~la~~Ga~Vil~~r~ 46 (245)
T PRK08945 14 RIILVTGAGDGIGREA-----ALTYARHGATVILLGRT 46 (245)
T ss_pred CEEEEECCCHHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899948861899999-----99999879989999698
No 385
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=72.49 E-value=4 Score=20.83 Aligned_cols=52 Identities=21% Similarity=0.464 Sum_probs=30.8
Q ss_pred HHHHH---HHHHHHHH---CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE
Q ss_conf 13456---66777640---01221144554420245877886651247765899999847978988
Q gi|254780831|r 240 ALIDV---KRAISMYQ---KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES 299 (341)
Q Consensus 240 s~~da---~r~~~~~~---~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~ 299 (341)
.+-|| .|.+-+.- ++++|.+ ++.||. +.-++..+ +-..+++.|.+|+|++-.
T Consensus 79 nVVDA~nLERnL~LTLQL~E~G~p~i-~~LN~~-----DeA~k~GI--~Id~~~Lee~LGvPVv~~ 136 (733)
T TIGR00437 79 NVVDASNLERNLYLTLQLLELGIPMI-LALNLV-----DEAEKKGI--RIDEEKLEERLGVPVVPT 136 (733)
T ss_pred EEECHHHHHHHHHHHHHHHHHCCHHH-HHHHHH-----HHHHHCCC--EECHHHHHHHCCCCEEEE
T ss_conf 97256677789999999997162585-687267-----89977296--312577754338652565
No 386
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=72.42 E-value=2.7 Score=21.95 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=35.8
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1377758997455644421000000-022340267421443113456667776400122114455442
Q gi|254780831|r 199 VWGQLDFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341)
Q Consensus 199 ~w~~~D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341)
.|...-|-+|||| |-.|-...+.. ....|++++|.--..--....+..+.+++++++|.+=+++|.
T Consensus 61 ~~~~~~~~~IDtP-GH~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK 127 (195)
T cd01884 61 ETANRHYAHVDCP-GHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNK 127 (195)
T ss_pred ECCCEEEEECCCC-CHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6088169962689-607788899863511362689985277874789999999998099962799968
No 387
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=72.25 E-value=2.8 Score=21.87 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=23.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 01024466654257899998987235775
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGK 125 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~ 125 (341)
-|.+..|.-|+|||.+|+..|+.+-+.|+
T Consensus 20 ~iv~~~GpAGtGKT~la~~~al~~l~~~~ 48 (205)
T pfam02562 20 DIVFGIGPAGTGKTYLAVAAAVDALKDGK 48 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 80799899986099999999999997189
No 388
>PRK01184 hypothetical protein; Provisional
Probab=72.22 E-value=3.2 Score=21.45 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCC
Q ss_conf 201024466654257899998987235775069882-246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD-ADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD-aDi 134 (341)
.||.++ |.-|.||||+|- .|.+.|+.| +| +|+
T Consensus 2 ~iIGlT-G~iGSGKstva~----i~~e~G~~v--i~~~Di 34 (183)
T PRK01184 2 MIIIVT-GMPGSGKGEFSK----IARELGIPV--VVMGDV 34 (183)
T ss_pred EEEEEE-CCCCCCHHHHHH----HHHHCCCEE--EECCHH
T ss_conf 399996-899887899999----999779939--986077
No 389
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=71.98 E-value=2.7 Score=22.00 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC----------CCCCEE--------CCCCCCCCCCCCCCCCCC
Q ss_conf 24466654257899998987235775069882246787----------653100--------024563112334457663
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP----------SIPKLL--------KISGKVEISDKKFLKPKE 161 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p----------s~~~~l--------g~~~~~~~~~~~~i~p~~ 161 (341)
..||-=||||||+|==||-||.-. .. |.+..+. +-..+. |+++-+.+.|+-...|..
T Consensus 40 LF~GpRGtGKTS~ARIfAKaLNC~-~~----~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~ 114 (363)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNCQ-GP----DGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIRELRENVKYAPSK 114 (363)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCC-CC----CCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 502859976355899999986588-78----7787777502277652898666886486568788999998730368755
Q ss_pred -CCCEEECC
Q ss_conf -22303223
Q gi|254780831|r 162 -NYGIKIMS 169 (341)
Q Consensus 162 -~~gi~~~s 169 (341)
.|-|.++.
T Consensus 115 ~kYKvYIID 123 (363)
T TIGR02397 115 GKYKVYIID 123 (363)
T ss_pred CCCCEEEEE
T ss_conf 443358873
No 390
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=71.77 E-value=3.4 Score=21.29 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..||--||||||++--||-+|...
T Consensus 42 lf~G~rGvGKTt~ARi~Ak~lNC~ 65 (717)
T PRK08853 42 LFSGTRGVGKTTIGRLFAKGLNCE 65 (717)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 610889888989999999986789
No 391
>PRK08643 acetoin reductase; Validated
Probab=71.68 E-value=3.3 Score=21.40 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 54201024466654257899998987235775069882246
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
+.|+..|+.|-+|.|+.+ |..|++.|.+|.+.|-|-
T Consensus 1 mnKvalVTGg~~GIG~ai-----a~~la~~Ga~V~i~d~~~ 36 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAI-----AKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCH
T ss_conf 984999957578899999-----999998799999996988
No 392
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=71.64 E-value=4.5 Score=20.45 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=28.0
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0102446665425789999898723577506988224
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.|-|.-|- |=||||-|..+|+--+-.|+||+++-.=
T Consensus 24 li~VytG~-GKGKTTAAlGlalRA~G~G~rV~ivQFl 59 (190)
T PRK05986 24 LLIVHTGN-GKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (190)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 79998069-9871889999999983699889999994
No 393
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=71.57 E-value=3 Score=21.60 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=72.3
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 0244666542578999989872357-----75069882246787653100024563112334457663223032233343
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNK-----GKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASL 173 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~-----G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l 173 (341)
.|.-|=-|+||||||=-||--|... |+-|=.==||+=| -+.|-+.+.+ ++.+.- .-+||=++
T Consensus 45 MiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERADLVG----EYIGHTAqkT---Re~~kk-A~GGvLFi----- 111 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERADLVG----EYIGHTAQKT---REVIKK-ALGGVLFI----- 111 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC----CCCCCHHHHH---HHHHHH-HCCCCHHH-----
T ss_conf 7742786684389999999998533756788678876222122----3203004899---999998-63880055-----
Q ss_pred CCCCCCCCCCCCC---HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC---CHHHHCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 5522100013420---24789998675213777589974556444210---00000022340267421443113456667
Q gi|254780831|r 174 VDENVAMIWRGPM---VQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH---LTIAQKIPLSGVVIVSTPQDLALIDVKRA 247 (341)
Q Consensus 174 ~~~~~~~~~rg~~---~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~---lsl~~~~~~~~~iiVttP~~~s~~da~r~ 247 (341)
|+=-++. ||-. =--||..+.+..+=..-|+|||=. |..++- |++.=.++.-=.|-.+-|+=+ ..
T Consensus 112 -DEAYSLa-RGGEKDFGKEAIDtLVK~mEd~~~~lvlILA--GY~~EM~yFL~~NPGL~SRFPi~i~FPdY~-~e----- 181 (261)
T TIGR02881 112 -DEAYSLA-RGGEKDFGKEAIDTLVKAMEDQRNELVLILA--GYSDEMDYFLSLNPGLRSRFPISIDFPDYT-VE----- 181 (261)
T ss_pred -HHHHHHH-CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHCCCCCCCCCCCEEECCCCC-HH-----
T ss_conf -7777761-4888876620888999987615698689970--876899998620779777665054188998-88-----
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHH
Q ss_conf 776400122114455442024587788665124776589999984
Q gi|254780831|r 248 ISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKI 292 (341)
Q Consensus 248 ~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~ 292 (341)
..+-|+++|- .+|.|.|.+....++-+.+
T Consensus 182 ---------eL~~Ia~~m~-------~~ReY~Lt~~A~~~lr~~l 210 (261)
T TIGR02881 182 ---------ELMEIAERMV-------KEREYKLTEEAKWKLREHL 210 (261)
T ss_pred ---------HHHHHHHHHH-------HHHHHCCCHHHHHHHHHHH
T ss_conf ---------9999999998-------6464225788999999997
No 394
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=71.37 E-value=4.9 Score=20.25 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCC
Q ss_conf 44666542578999989872357--75069882246
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNK--GKNVAILDADV 134 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi 134 (341)
-||+-|+|||+++-...-.|.+. ..++..++|--
T Consensus 60 I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~ 95 (394)
T PRK00411 60 ILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQI 95 (394)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 988999989999999999999746896599996966
No 395
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=71.33 E-value=3 Score=21.69 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..||--||||||+|--+|-+|...
T Consensus 47 lf~G~rG~GKTt~Ari~ak~lnc~ 70 (507)
T PRK06645 47 LLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 745879978899999999996799
No 396
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.30 E-value=3 Score=21.67 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.1
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0244666542578999989872357
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
-..||--||||||++--||-+|...
T Consensus 41 ylf~g~rg~gktt~ari~ak~lnc~ 65 (696)
T PRK06872 41 YLFSGTRGVGKTSIARLFAKGLNCV 65 (696)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 7511789888889999999986789
No 397
>PRK06720 hypothetical protein; Provisional
Probab=71.19 E-value=2.9 Score=21.78 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=30.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|+..|+.|=+|.|+++ |..|++.|.+|.+.|-|-
T Consensus 17 KvalITGa~~GIG~a~-----A~~la~~Ga~Vvi~d~~~ 50 (169)
T PRK06720 17 KVAIVTGGGIGIGRNT-----ALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEECCCH
T ss_conf 9999989754899999-----999998699899952763
No 398
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=71.05 E-value=3.4 Score=21.30 Aligned_cols=27 Identities=41% Similarity=0.763 Sum_probs=19.1
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0102446665425789999898723577506988
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
.||+. |+-.|||||+--.|. |+++..+
T Consensus 5 ~V~iv-G~pN~GKSsL~N~L~------~~~~a~v 31 (168)
T cd04163 5 FVAIV-GRPNVGKSTLLNALV------GQKISIV 31 (168)
T ss_pred EEEEE-CCCCCCHHHHHHHHH------CCCEEEE
T ss_conf 89999-999999999999995------8970332
No 399
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=70.98 E-value=3.5 Score=21.20 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5420102446665425789999898723577506988224
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
++|+..|+.+-+|.|+.+ |..|++.|++|.+.|-+
T Consensus 1 M~KvalITGas~GIG~a~-----a~~la~~G~~Vv~~~~~ 35 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAI-----ARELLADGYRVIATYFG 35 (245)
T ss_pred CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 985999947888899999-----99999879989999588
No 400
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=70.92 E-value=2.5 Score=22.22 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=33.7
Q ss_pred CCEEEEECCCCCHHHHH---------HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE
Q ss_conf 40267421443113456---------667776400122114455442024587788665124776589999984797898
Q gi|254780831|r 228 SGVVIVSTPQDLALIDV---------KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLE 298 (341)
Q Consensus 228 ~~~iiVttP~~~s~~da---------~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg 298 (341)
+=.+||||- -|++|- .|.++=+++++.|.+ +|.| | .-|...+...+ .+.+.++|++|++.
T Consensus 146 TiG~lvTTD--GsI~dI~RedYv~AEERVveELKe~~KPFI-ilLN-s--~~P~~pET~~L-----~~eLe~KYDvpV~~ 214 (492)
T TIGR02836 146 TIGLLVTTD--GSITDIPREDYVEAEERVVEELKELNKPFI-ILLN-S--THPLAPETKAL-----RKELEEKYDVPVLV 214 (492)
T ss_pred EEEEEEECC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCEE-EEEC-C--CCCCCHHHHHH-----HHHHHHHCCCCEEE
T ss_conf 078997117--840346731340033577677640799679-9976-8--89788657999-----99865208844589
No 401
>PRK04040 adenylate kinase; Provisional
Probab=70.78 E-value=5 Score=20.20 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=21.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 201024466654257899998987235775069
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVA 128 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~ 128 (341)
+++.|+ |=-||||||+.-++.-.|. .++++.
T Consensus 3 k~Vvvt-GiPGvGKTTv~~~~~~~l~-~~~~~v 33 (189)
T PRK04040 3 KVVVVT-GVPGVGKTTVLNKALEKLK-EDYKIV 33 (189)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHC-CCCEEE
T ss_conf 189997-5898878999999999723-587598
No 402
>PRK08233 hypothetical protein; Provisional
Probab=70.78 E-value=6 Score=19.64 Aligned_cols=109 Identities=20% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
.||+|+ |=-|=||||++-.|.-.|. +.++..+|.+ |-+..|. .. ...... +.. |
T Consensus 4 ~IIgIa-GgSgSGKTtla~~l~~~l~--~~~~~~~D~y-~~~~~~~---------~~-~~~~~~----~~~-----~--- 57 (182)
T PRK08233 4 KIITIA-AVSGGGKTTLTERLTHKLK--NSKALYFDRY-DFDNCPE---------DI-CKWIDD----GAN-----Y--- 57 (182)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHCC--CCEEEEECCC-CCCCCHH---------HH-HHHHCC----CCC-----C---
T ss_conf 899996-8886789999999999746--7758996665-5546878---------89-987406----778-----6---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
+ .|.-..+...+.++.. ...+||+|+|-+=+..+.. +.+. .|-.|-|-||...++
T Consensus 58 -d---~~d~~~l~~~l~~l~~---~~~~d~iIvEgil~l~~~~--lr~l--~D~kIfVdtp~Dirl 112 (182)
T PRK08233 58 -S---EWVLTPLIKDIQELIA---KSNVDYIIVDYPFAYLNSE--MRQY--IDVTIFIDTPLDIAM 112 (182)
T ss_pred -C---HHHHHHHHHHHHHHHC---CCCCCEEEEEEEHHHCCHH--HHHH--HCEEEEECCCHHHHH
T ss_conf -6---6669999999999855---9987289996443626898--9977--187899728689999
No 403
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=70.64 E-value=7 Score=19.19 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=31.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
.++++. |.-|.||||+.--++-.+....=+|.+-+-|+...+
T Consensus 32 e~~~ii-G~sGsGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~ 73 (228)
T cd03257 32 ETLGLV-GESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS 73 (228)
T ss_pred CEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC
T ss_conf 899999-999986999999997289878866998996467799
No 404
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=70.54 E-value=5.5 Score=19.89 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20102446665425789999898723577506988
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
+=+++..|-=|+||||+.-.|.-.|......+.++
T Consensus 43 ~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i 77 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKL 77 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 96599972998988999999998459345489997
No 405
>KOG3347 consensus
Probab=70.47 E-value=3.1 Score=21.52 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=17.4
Q ss_pred EECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 10244666542578999989872
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACAL 120 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~al 120 (341)
|.|+ |--|+||||++.-||-.+
T Consensus 10 ILvt-GTPG~GKstl~~~lae~~ 31 (176)
T KOG3347 10 ILVT-GTPGTGKSTLAERLAEKT 31 (176)
T ss_pred EEEE-CCCCCCCHHHHHHHHHHH
T ss_conf 7986-799988025999999973
No 406
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.45 E-value=5 Score=20.19 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=26.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 102446665425789999898723577506988224
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|-|.-|. |=||||-|..+|+--+-.|+||+++-.=
T Consensus 5 i~vytG~-GKGKTTAAlG~alRA~G~G~rV~ivQFl 39 (159)
T cd00561 5 IQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQFL 39 (159)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 9999579-9970899999999984499989999981
No 407
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=70.23 E-value=8 Score=18.81 Aligned_cols=10 Identities=50% Similarity=0.906 Sum_probs=6.3
Q ss_pred CCCCCCCHHH
Q ss_conf 4442100000
Q gi|254780831|r 213 GTGDAHLTIA 222 (341)
Q Consensus 213 G~gd~~lsl~ 222 (341)
|.|+.||.++
T Consensus 451 GmGELHLei~ 460 (697)
T COG0480 451 GMGELHLEII 460 (697)
T ss_pred ECCHHHHHHH
T ss_conf 2655549999
No 408
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=70.15 E-value=3.3 Score=21.36 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=21.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..+|--||||||++--||-+|.-.
T Consensus 43 LF~GprGtGKTT~ArilAkaLnC~ 66 (462)
T PRK06305 43 LFSGIRGTGKTTLARIFAKALNCQ 66 (462)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 303899859999999999996799
No 409
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.05 E-value=3.5 Score=21.20 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=29.9
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|-+|.|+.+ |..|++.|.+|.+.|-+
T Consensus 8 KvalVTGas~GIG~ai-----A~~la~~Ga~V~i~~~~ 40 (253)
T PRK06172 8 QVALVTGGAAGIGRAT-----AIAFAREGAKVVVADRD 40 (253)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899937576899999-----99999879989999798
No 410
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=70.03 E-value=3.3 Score=21.34 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..||--||||||++--||-+|...
T Consensus 42 l~~g~rg~gkt~~ar~~ak~lnc~ 65 (705)
T PRK05648 42 LFTGTRGVGKTTIARIIAKCLNCE 65 (705)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 500789888989999999986778
No 411
>PRK07429 phosphoribulokinase; Provisional
Probab=69.96 E-value=7.5 Score=19.00 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=30.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
-||+|+ |--|-||||++-.|.-.|.. .+|.++-.|=|-
T Consensus 9 ~IIGIA-GgSGSGKTTv~r~I~~~fg~--~~VtvI~~DdYh 46 (331)
T PRK07429 9 VIIGVA-GDSGCGKSTFLRRLADLFGE--ELVTVICLDDYH 46 (331)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 899985-78877899999999998388--877999478677
No 412
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=69.81 E-value=4.2 Score=20.67 Aligned_cols=47 Identities=30% Similarity=0.448 Sum_probs=35.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC
Q ss_conf 201024466654257899998987235775069882246787653100024563112
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS 152 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~ 152 (341)
++|-|+ |==||-++++-|+..|.+.|+||++. .-|++...+.+..++
T Consensus 50 ~~IhVa---GTNGKGSt~~~l~~il~~~G~~vG~f-------tSPHl~~~~ERi~in 96 (416)
T PRK10846 50 FVFTVA---GTNGKGTTCRTLESILMAAGYRVGVY-------SSPHLVRYTERVRVQ 96 (416)
T ss_pred CEEEEE---CCCCHHHHHHHHHHHHHHCCCCCCEE-------CCCCCCCEEEEEEEC
T ss_conf 989996---88557999999999999879973077-------888679510156799
No 413
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=69.77 E-value=3.9 Score=20.87 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..+|--||||||+|--||-+|...
T Consensus 49 l~~g~rg~gktt~ari~a~~lnc~ 72 (600)
T PRK09111 49 MLTGVRGVGKTTTARILARALNYK 72 (600)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 645789878999999999996698
No 414
>PRK00023 cmk cytidylate kinase; Provisional
Probab=69.75 E-value=4.1 Score=20.76 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
-||||= |--|.||||+|-.||-.|.-. .+|.-
T Consensus 5 iIIaID-GpagSGKST~ak~lA~~L~~~-----yldTG 36 (225)
T PRK00023 5 PVIAID-GPAGSGKGTVAKILAKKLGFH-----YLDTG 36 (225)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHCCC-----EECHH
T ss_conf 789965-898678789999999993988-----76410
No 415
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=69.61 E-value=3.4 Score=21.32 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..+|.-||||+|+|--+|.+|...
T Consensus 42 LFsGPrGvGKTTlArifAkaLnC~ 65 (613)
T PRK05896 42 IFSGPRGIGKTSIAKIFAKAINCL 65 (613)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 755899848899999999996699
No 416
>KOG1200 consensus
Probab=69.61 E-value=6.2 Score=19.52 Aligned_cols=36 Identities=42% Similarity=0.622 Sum_probs=30.2
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 42010244666542578999989872357750698822467
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
.++-+|+.|--|.||- ++..|++.|+||.+.|+|..
T Consensus 14 sk~~~vtGg~sGIGrA-----ia~~la~~Garv~v~dl~~~ 49 (256)
T KOG1200 14 SKVAAVTGGSSGIGRA-----IAQLLAKKGARVAVADLDSA 49 (256)
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
T ss_conf 6224873487507799-----99999746967997503224
No 417
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=69.52 E-value=5.8 Score=19.76 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=33.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCC
Q ss_conf 10244666542578999989872357-75069882246787
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGP 137 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~p 137 (341)
++|.+|=-|-||||++--|...+.+. |.+|++|--|=.-|
T Consensus 1 lCVLcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlIp 41 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCC
T ss_conf 90432698787368999999998644476058986212142
No 418
>pfam09488 Osmo_MPGsynth Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth). This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP) EC:2.4.1.217, comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=69.52 E-value=4.2 Score=20.68 Aligned_cols=33 Identities=36% Similarity=0.599 Sum_probs=22.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC-CCE-EEEEECCCCCCC
Q ss_conf 244666542578999989872357-750-698822467876
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK-GKN-VAILDADVYGPS 138 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~-G~~-V~liDaDi~~ps 138 (341)
|-||||- .--++.+||+. |++ |+.+|||-|-|.
T Consensus 140 VR~GKgE------GMiiG~lLAk~~g~~YVGFiDADNyiPG 174 (381)
T pfam09488 140 VRNGKGE------GMILGILLAKALGRRYVGFIDADNYVPG 174 (381)
T ss_pred EECCCCH------HHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 6458513------8899999998618865867515667771
No 419
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=69.48 E-value=5.5 Score=19.88 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
.++|+. |.-|.||||+.-.|+-.+.-..-+|.+-+-|+..
T Consensus 37 e~vaiv-G~nGsGKSTLlk~l~Gll~p~~G~I~v~G~~i~~ 76 (273)
T PRK13632 37 EYVAIL-GHNGSGKSTISKILTGLLKPQSGEIKIFGITISK 76 (273)
T ss_pred CEEEEE-CCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 899999-9999869999999973877888759999999996
No 420
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.18 E-value=4.1 Score=20.71 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.6
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0244666542578999989872357
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
-..||--||||||++--||-+|...
T Consensus 41 ylf~G~rGvGKTt~aRi~Ak~lnC~ 65 (816)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCE 65 (816)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 7511789888889999999986789
No 421
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=68.94 E-value=4.4 Score=20.52 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 46665425789999898723577506
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALKNKGKNV 127 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala~~G~~V 127 (341)
-|.-|||||+++-.+|-++...-+++
T Consensus 5 ~GppG~GKT~l~~~lA~~~~~~~~~i 30 (131)
T pfam07726 5 EGVPGLAKTLLARTLARSLGLDFRRI 30 (131)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 98998769999999999959981688
No 422
>pfam07287 DUF1446 Protein of unknown function (DUF1446). This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=68.92 E-value=2.6 Score=22.09 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=21.1
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCC
Q ss_conf 10244666542578999989872357--75069882246787653
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYGPSIP 140 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~ps~~ 140 (341)
|-|.|--||.--.-.+--+.-..+++ ..||+.+..|=-.+.++
T Consensus 72 ikii~NaGa~NP~~~a~~v~~~a~~~Gl~lkVA~V~GDDv~~~~~ 116 (362)
T pfam07287 72 IRIVTNAGALNPRGAAEAVRELARELGLDLKVAVVEGDDVLPRVD 116 (362)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 389952887897999999999999779995399997875314567
No 423
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=68.85 E-value=9 Score=18.45 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=32.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
+=|||. |-=|.||||+..-|+=.|.=.+=.|.+=|.++..
T Consensus 388 ~r~Ai~-G~SG~GKsTLL~~L~G~l~P~~G~vtl~G~~~~~ 427 (566)
T TIGR02868 388 ERVAIL-GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSS 427 (566)
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHH
T ss_conf 608986-6887657899999984028999917877732432
No 424
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=68.73 E-value=3.6 Score=21.12 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=19.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..+|.-||||+++|-.+|.+|-..
T Consensus 30 LF~Gp~G~GK~~~A~~~A~~ll~~ 53 (313)
T PRK05564 30 LIVGEDGIGKSILAKEIANKILGK 53 (313)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 327999850999999999998289
No 425
>PRK06849 hypothetical protein; Provisional
Probab=68.62 E-value=6.7 Score=19.31 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=29.0
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 42010244666542578999989872357750698822467
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
++-|.|+ -|+++.+..||-.|.+.|++|.+.|..-+
T Consensus 4 p~tvLiT-----g~r~~~aL~laR~l~~~Gh~V~~aD~~~~ 39 (387)
T PRK06849 4 PKTVLIT-----GARAPAALQLARSFHNAGHTVILADSLKY 39 (387)
T ss_pred CCEEEEE-----CCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 8779995-----88607899999999878997999848987
No 426
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=68.59 E-value=3.7 Score=21.04 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 2446665425789999898723577
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNKG 124 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~G 124 (341)
..+|--||||||+|--+|-+|....
T Consensus 44 LF~GPRGvGKTT~ARIfAKaLNC~~ 68 (718)
T PRK07133 44 LFSGPHGTGKTSVAKIFANALNCSH 68 (718)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 6238998688999999999967999
No 427
>CHL00095 clpC Clp protease ATP binding subunit
Probab=68.47 E-value=6.3 Score=19.52 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHCC-------CCCEEEEEECC
Q ss_conf 4466654257899998987235-------77506988224
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKN-------KGKNVAILDAD 133 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~-------~G~~V~liDaD 133 (341)
.=|-.|||||.++=-||.-.++ +|+++.-+|.-
T Consensus 205 LvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~ 244 (823)
T CHL00095 205 LIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIG 244 (823)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH
T ss_conf 2379998799999999997608899868759936884288
No 428
>KOG1969 consensus
Probab=68.43 E-value=5.7 Score=19.77 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=28.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+-|+..+|--|-||||+|.-.|- +.||+|.=+-|-
T Consensus 326 kKilLL~GppGlGKTTLAHViAk---qaGYsVvEINAS 360 (877)
T KOG1969 326 KKILLLCGPPGLGKTTLAHVIAK---QAGYSVVEINAS 360 (877)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH---HCCCEEEEECCC
T ss_conf 00687536887872479999998---628548873255
No 429
>KOG0460 consensus
Probab=68.05 E-value=4.5 Score=20.47 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 6665425789999898723577506
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNV 127 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V 127 (341)
|.=--||||+++.+--.||+.|.-.
T Consensus 61 GHVDHGKTTLTaAITkila~~g~A~ 85 (449)
T KOG0460 61 GHVDHGKTTLTAAITKILAEKGGAK 85 (449)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 0335772008999999997516501
No 430
>TIGR00454 TIGR00454 conserved hypothetical protein TIGR00454; InterPro: IPR005245 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=68.04 E-value=6.2 Score=19.56 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC---CCCCCCCCCEEC-CCCCCCCCHHHHHHH-HHHHHCCCCCEEEEEE
Q ss_conf 99999999986067634235503222343332---223465420102-446665425789999-8987235775069882
Q gi|254780831|r 57 SLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQ---RNNLNVKKFVAV-ASGKGGVGKSTTVVN-IACALKNKGKNVAILD 131 (341)
Q Consensus 57 ~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~---~~~~~~~~iiav-~SgKGGVGKSt~s~n-La~ala~~G~~V~liD 131 (341)
.|.+.+-.++++..||..+.+.-+-|...++. .+.+.++||+.+ |||||=+===.=+.. |-.++.+ -++++-
T Consensus 29 ~lIDhvl~~l~~~~GV~~ii~~TSPhTP~Te~y~~~~~~~~~~ivvidasGkGYiEDl~E~~~hlE~~~~E---P~lV~s 105 (204)
T TIGR00454 29 KLIDHVLEALKKAKGVDNIIVVTSPHTPKTEEYVAEKYKEYKRIVVIDASGKGYIEDLREVLSHLELAFSE---PLLVVS 105 (204)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CEEEEE
T ss_conf 04577778664047875379983777976378873058504578899769996025278999987766339---857874
Q ss_pred CCC
Q ss_conf 246
Q gi|254780831|r 132 ADV 134 (341)
Q Consensus 132 aDi 134 (341)
+|+
T Consensus 106 sDl 108 (204)
T TIGR00454 106 SDL 108 (204)
T ss_pred CCH
T ss_conf 360
No 431
>PRK06227 consensus
Probab=67.97 E-value=4.1 Score=20.73 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=29.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+. +|..|++.|.+|.+.|.|
T Consensus 6 KvalVTGas~GIG~a-----iA~~la~~Ga~V~i~~~~ 38 (256)
T PRK06227 6 KVAIVTGGGQGIGAA-----IAQTFAENGAKVVIADID 38 (256)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECC
T ss_conf 889995866889999-----999999879999999698
No 432
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=67.55 E-value=4.9 Score=20.22 Aligned_cols=42 Identities=12% Similarity=0.019 Sum_probs=18.0
Q ss_pred EECCCCCHHHHHHHHHCCCEEEE-CCCCHHHHHHHCCCCCEEEECCCC
Q ss_conf 51247765899999847978988-279989997502882179977999
Q gi|254780831|r 277 YDLFGNGGARFEAEKIGIPFLES-VPFDMDVRVLSDLGIPIVVHNMNS 323 (341)
Q Consensus 277 ~~~fg~~~~~~~a~~~~i~~lg~-IP~d~~i~~a~~~g~P~v~~~p~s 323 (341)
++.||.-..+.+ ..|+|+++. ++--+++.+....| .+..|++
T Consensus 273 ~Egf~~~~lEAm--a~G~PvI~s~~gg~~e~i~~~~~G---~l~~~~d 315 (359)
T cd03808 273 REGLPRVLLEAM--AMGRPVIATDVPGCREAVIDGVNG---FLVPPGD 315 (359)
T ss_pred CCCCCCCHHHHH--HCCCCEEECCCCCHHHHHHCCCCE---EEECCCC
T ss_conf 135784289998--669989994899728886079818---9989999
No 433
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=67.54 E-value=7.1 Score=19.13 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 6665425789999898723577506988224
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|.=|.||||+...|+..+.+-+-++..+|-|
T Consensus 453 G~TGsGKTtl~~fL~aq~~ky~~~~f~fDkd 483 (800)
T PRK13898 453 GPTGAGKTVLMNFLCAQAMKFSPRMFFFDKD 483 (800)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 9999989999999999987548879999799
No 434
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=67.51 E-value=3.8 Score=20.97 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 02446665425789999898723
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala 121 (341)
.+.+|.-|+||||++--+|-+|-
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l~ 61 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALARELY 61 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98889298489999999999967
No 435
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=67.47 E-value=9.6 Score=18.27 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHHHHCCCCCCCEEE---ECCCCCC-------CC-CCCCCCCC--CCCEECCCCCCCCCHH----HHHHHHHHHHC
Q ss_conf 9999999860676342355---0322234-------33-32223465--4201024466654257----89999898723
Q gi|254780831|r 59 RSNAQQIIQNIPTVKNAVV---TLTENKN-------PP-QQRNNLNV--KKFVAVASGKGGVGKS----TTVVNIACALK 121 (341)
Q Consensus 59 ~~~i~~~l~~i~gv~~v~V---~lt~~~~-------~~-~~~~~~~~--~~iiav~SgKGGVGKS----t~s~nLa~ala 121 (341)
....+..+.-.|-+|.|+. +|.++.+ .+ ++.....- |++.-+-||===.|-| -=+|+.+.+|.
T Consensus 525 vR~~R~~~gi~Pv~K~vDTcAAEF~A~TpY~YSTY~~e~~d~~~~~~~Kk~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr 604 (1089)
T TIGR01369 525 VRKLRKELGIIPVYKRVDTCAAEFEAKTPYLYSTYEGERDDVEFTEKEKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALR 604 (1089)
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEHHHHHHHHHHHH
T ss_conf 99999846974778775232120201568852577666567666657785689987845140663120567899999998
Q ss_pred CCCCEEEEEECC
Q ss_conf 577506988224
Q gi|254780831|r 122 NKGKNVAILDAD 133 (341)
Q Consensus 122 ~~G~~V~liDaD 133 (341)
++|||+.+|=.+
T Consensus 605 ~~Gye~ImiN~N 616 (1089)
T TIGR01369 605 EAGYETIMINYN 616 (1089)
T ss_pred HCCCEEEEEECC
T ss_conf 729959999778
No 436
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=67.38 E-value=4 Score=20.80 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=19.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..||--||||||++--||-+|...
T Consensus 42 lf~G~rG~GKtt~ari~ak~lnc~ 65 (643)
T PRK07994 42 LFSGTRGVGKTSIARLLAKGLNCE 65 (643)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 745899888889999999996799
No 437
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=66.99 E-value=4.1 Score=20.74 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..+|.-|+||||+|--+|.+|--.
T Consensus 40 LFsGPrGvGKTt~ArifAkaLnC~ 63 (523)
T PRK08451 40 LFSGLRGSGKTSSARIFSRALVCE 63 (523)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 757899868899999999997599
No 438
>PRK06114 short chain dehydrogenase; Provisional
Probab=66.91 E-value=4.3 Score=20.62 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=29.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|+..|+.|-+|.|+. +|..|++.|.+|.+.|.+
T Consensus 17 KvalVTGa~~GIG~a-----iA~~la~~Ga~V~i~~~~ 49 (262)
T PRK06114 17 QVAFVTGAGSGIGQR-----IAIGLAQAGADVALFDLR 49 (262)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECC
T ss_conf 989996847899999-----999999879989999589
No 439
>PRK10206 putative dehydrogenase; Provisional
Probab=66.76 E-value=6.9 Score=19.23 Aligned_cols=15 Identities=13% Similarity=-0.066 Sum_probs=8.6
Q ss_pred CHHHHHHHCCCCCEE
Q ss_conf 989997502882179
Q gi|254780831|r 303 DMDVRVLSDLGIPIV 317 (341)
Q Consensus 303 d~~i~~a~~~g~P~v 317 (341)
..++.++...|.|..
T Consensus 302 y~~~~~aI~~G~p~p 316 (345)
T PRK10206 302 YDALYQTITHGAPNY 316 (345)
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999995799997
No 440
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=66.65 E-value=4.4 Score=20.52 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 25789999898723577506988224
Q gi|254780831|r 108 GKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 108 GKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|--.+.+-+|.+|++.|.+|-+++..
T Consensus 185 GgG~ig~E~A~~~~~lG~~Vtlv~~~ 210 (467)
T PRK07845 185 GSGVTGAEFASAYTELGVKVTLVSSR 210 (467)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 98799999999999739879999955
No 441
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=66.37 E-value=6.7 Score=19.33 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=30.8
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 65420102446665425789999898723577506988224
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.++-.|-|.-|- |=||||-|.-+|+--+-.|+||+++-.=
T Consensus 19 ~~kGlI~VYTGd-GKGKTTAAlGlalRA~G~G~rV~ivQFl 58 (178)
T PRK07414 19 TVEGLVQVFTSS-QRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred CCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 654179999579-9980899999999995399879999975
No 442
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=66.31 E-value=6.9 Score=19.24 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=22.2
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 02446665425789999898723577506988
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
.+.||--|-||||+.-.|...+.+.+.|+..+
T Consensus 142 ilIsG~TGSGKTT~l~all~~i~~~~~riiti 173 (283)
T pfam00437 142 ILVSGGTGSGKTTLLYALLNEINTDDERIVTI 173 (283)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99988999988999999998408777627873
No 443
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=66.20 E-value=4.4 Score=20.51 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..||--||||||+|--||-+|...
T Consensus 42 Lf~GprG~GKTs~Ari~akalnc~ 65 (541)
T PRK05563 42 LFCGTRGTGKTSTAKIFAKAVNCL 65 (541)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 303879958999999999995799
No 444
>KOG1803 consensus
Probab=66.12 E-value=9.2 Score=18.39 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.3
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 01024466654257899998987235775069882
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD 131 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD 131 (341)
-..+--|--|+|||++-+-+=..|-++|+||++.-
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVca 236 (649)
T KOG1803 202 DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCA 236 (649)
T ss_pred CCEEEECCCCCCCEEEHHHHHHHHHHCCCEEEEEC
T ss_conf 83575579988840439999999997288599976
No 445
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=66.12 E-value=5.1 Score=20.11 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=29.7
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5420102446665425789999898723577506988224
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+.|++.|+.|=+|.|+.+ |..|++.|.+|.+.|.+
T Consensus 1 mnKvalITG~s~GIG~ai-----a~~la~~Ga~V~i~~~~ 35 (259)
T PRK12384 1 MNKVAVVIGGGQTLGAFL-----CHGLAEEGYRVAVADIN 35 (259)
T ss_pred CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 997899946886899999-----99999879999999798
No 446
>PRK13973 thymidylate kinase; Provisional
Probab=65.90 E-value=8 Score=18.80 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=28.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20102446665425789999898723577506988
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAIL 130 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~li 130 (341)
++|++= |=-|.||||.+-.|+-.|.+.|++|.+.
T Consensus 4 ~fIv~E-GiDGsGKsTq~~~L~~~L~~~g~~v~~t 37 (216)
T PRK13973 4 RFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (216)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 499988-9999989999999999999779957994
No 447
>PRK06398 aldose dehydrogenase; Validated
Probab=65.68 E-value=4.8 Score=20.28 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=29.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|++.|+.|-+|.|+.+ |..|++.|.+|.++|-+-
T Consensus 7 KvalVTGgs~GIG~ai-----a~~la~~Ga~V~~~~~~~ 40 (256)
T PRK06398 7 KVVIVTGGSSGIGLAI-----VSRFVDEGSKVVSISRSE 40 (256)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCC
T ss_conf 9899968787899999-----999998699999994875
No 448
>PRK05717 oxidoreductase; Validated
Probab=65.64 E-value=4.9 Score=20.22 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=29.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+. +|..|++.|.+|.+.|-|
T Consensus 11 KvalITG~s~GIG~a-----ia~~la~~Ga~V~i~~~~ 43 (255)
T PRK05717 11 RVALVTGAARGIGLG-----IAAWLIAEGWQVVLADLD 43 (255)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECC
T ss_conf 889995878889999-----999999879989999698
No 449
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=65.63 E-value=5.7 Score=19.76 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf 66654257899998987235-77506988
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKN-KGKNVAIL 130 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~-~G~~V~li 130 (341)
|==|-||||.+--|+--|.+ .|+++.+.
T Consensus 9 GiDGaGKTT~~~~l~~~l~~l~g~~~~~t 37 (211)
T TIGR00041 9 GIDGAGKTTQLNLLKKLLKELEGYKVLFT 37 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 11587589999999999775138347887
No 450
>PRK06194 hypothetical protein; Provisional
Probab=65.61 E-value=4.7 Score=20.33 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+. +|..|++.|.+|.+.|-+
T Consensus 7 KvavITGassGIG~a-----~A~~la~~Ga~Vvl~d~~ 39 (301)
T PRK06194 7 KVAVITGAASGFGRE-----FARIGARLGMKLVLADVQ 39 (301)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECC
T ss_conf 989992737799999-----999999879989999798
No 451
>PRK10566 esterase; Provisional
Probab=65.49 E-value=5.3 Score=20.00 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341)
-||-+. ||.+-.-.-...|.+||++|++|.+-|+.-+|.+
T Consensus 29 ~Vvf~H---G~~~~~e~~~~~~~~la~~Gy~V~~Pd~~~hG~r 68 (249)
T PRK10566 29 CVIFYH---GFTSSSLVYSYFAVALAQAGFRVIMPDAPDHGAR 68 (249)
T ss_pred EEEEEC---CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 899968---9966400115799999978988996368888756
No 452
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.45 E-value=4.7 Score=20.32 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=30.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|+..|+.|=+|.|+. +|..|++.|.+|.+.|-|-
T Consensus 7 KvavITGaasGIG~a-----~A~~la~~Ga~Vvi~d~~~ 40 (275)
T PRK05876 7 RGAVITGGASGIGLA-----TGTEFARRGARVVLGDVDK 40 (275)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCH
T ss_conf 879992826699999-----9999998799899997988
No 453
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=65.40 E-value=4.7 Score=20.34 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.0
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 024466654257899998987235
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKN 122 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~ 122 (341)
++..|--|+||||+|--+|-.+..
T Consensus 53 ~lf~GPPG~GKTTlAriiAk~~~~ 76 (234)
T pfam05496 53 VLLYGPPGLGKTTLANIIANEMGV 76 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 788789999888999999984087
No 454
>pfam00350 Dynamin_N Dynamin family.
Probab=65.26 E-value=7.2 Score=19.13 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCCC-----CCHHHHCCCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 7758997455644421-----0000000223402674214-4311345666777640012211445
Q gi|254780831|r 202 QLDFLLIDMPPGTGDA-----HLTIAQKIPLSGVVIVSTP-QDLALIDVKRAISMYQKMNIPIIGM 261 (341)
Q Consensus 202 ~~D~liiD~ppG~gd~-----~lsl~~~~~~~~~iiVttP-~~~s~~da~r~~~~~~~~~~~i~Gi 261 (341)
..+..||||| |.++. .++....-+.|-++.|+.- ++.+-.++....+.....+-+.+||
T Consensus 100 ~~~l~lvDtP-Gl~s~~~~~~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V 164 (168)
T pfam00350 100 VPGLTLVDTP-GLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGV 164 (168)
T ss_pred CCCEEEEECC-CCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8881898279-8654443369999999853866999984695166619999999739999838999
No 455
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=65.02 E-value=3.7 Score=21.03 Aligned_cols=226 Identities=17% Similarity=0.252 Sum_probs=105.1
Q ss_pred CCC-CCEECCCCCCCCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCEECC-CCCC--CCCC-C--C-CC--CCCC
Q ss_conf 654-201024466654257899998987235775-06988224678765310002-4563--1123-3--4-45--7663
Q gi|254780831|r 93 NVK-KFVAVASGKGGVGKSTTVVNIACALKNKGK-NVAILDADVYGPSIPKLLKI-SGKV--EISD-K--K-FL--KPKE 161 (341)
Q Consensus 93 ~~~-~iiav~SgKGGVGKSt~s~nLa~ala~~G~-~V~liDaDi~~ps~~~~lg~-~~~~--~~~~-~--~-~i--~p~~ 161 (341)
..+ +-|||+ |==||||+|+-||..|.+.|. .+.++-.-+-..+-.-.+|- .+.. ++.| + . .+ .|-.
T Consensus 105 ~~~k~~iaVa---GtHGKTTTTamia~~~~~aGLdPt~~~GG~~~~~~~Na~~g~~~~~lvaEaDESd~~~sFl~~~P~~ 181 (491)
T TIGR01082 105 RKRKESIAVA---GTHGKTTTTAMIAVILKEAGLDPTVIVGGEVKEAGTNARLGSSGEYLVAEADESDRSASFLHLQPEV 181 (491)
T ss_pred HHHCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEECCCCCEEEEEEEECCCCCCHHCCCCCE
T ss_conf 6208707998---3687256899999999844999768986643665774357146867999987237764012069857
Q ss_pred ----CCCEEECC--CC---------C------CCCCCCCCCCC-CCCHHHHHHHHHHHHCC-------------CCCCEE
Q ss_conf ----22303223--33---------4------35522100013-42024789998675213-------------777589
Q gi|254780831|r 162 ----NYGIKIMS--MA---------S------LVDENVAMIWR-GPMVQSAIMHMLHNVVW-------------GQLDFL 206 (341)
Q Consensus 162 ----~~gi~~~s--~g---------~------l~~~~~~~~~r-g~~~~~~l~~~l~~~~w-------------~~~D~l 206 (341)
+-.-+-+. .+ | +...+..++.- .| .++++...+.- .+.||.
T Consensus 182 ai~TNie~DH~D~tY~~~~E~~~~aF~~F~~~l~~~G~~v~c~DD~----~~~~l~~~~~~~r~d~~~~y~~~~~~~~~~ 257 (491)
T TIGR01082 182 AIVTNIEPDHLDNTYGSSLERLKAAFEKFIHNLPFYGLAVICADDP----VLRKLVPKATESRKDVVITYGGSGEDADIR 257 (491)
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCH----HHHHHHHHHHHCCCEEEEECCCCCCCCEEE
T ss_conf 9974777434776664578999999999998278887999983865----478776355533870478668777641477
Q ss_pred EEECCCCCCCCCCHHHHCCCC-------CCEEEEECCCCCHHHHHHHHHHHHHCCCCCH---------HHHHHHHCCCCC
Q ss_conf 974556444210000000223-------4026742144311345666777640012211---------445544202458
Q gi|254780831|r 207 LIDMPPGTGDAHLTIAQKIPL-------SGVVIVSTPQDLALIDVKRAISMYQKMNIPI---------IGMIENMSYFLA 270 (341)
Q Consensus 207 iiD~ppG~gd~~lsl~~~~~~-------~~~iiVttP~~~s~~da~r~~~~~~~~~~~i---------~GiV~NMs~~~~ 270 (341)
+.+----......++.-.... -..+.|..|-.=.+..|.-++.++.+++++. --|=.++..|.
T Consensus 258 ~~~~~~~~~~~~f~v~~~~~~~~~~~~G~~~~~~~~pG~HNvLNAlAA~ava~~~g~~~~G~~~~~~~~~I~~~L~~F~- 336 (491)
T TIGR01082 258 AENIQQSGAEFEFSVRLKGKLGEATTEGPLEFKLNLPGRHNVLNALAAIAVALELGLDFYGKVIVDFLEAIKRALANFQ- 336 (491)
T ss_pred EEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCC-
T ss_conf 8874322645899999704522011100279998038720067899999888872212368556415899999985068-
Q ss_pred CCCCCEEECCCCCHHHHHHHHHCC------CEE----EECCCCHHH-----HHHHC--CCCCEEEECCCCHHHH---HHH
Q ss_conf 778866512477658999998479------789----882799899-----97502--8821799779998999---999
Q gi|254780831|r 271 SDTGKKYDLFGNGGARFEAEKIGI------PFL----ESVPFDMDV-----RVLSD--LGIPIVVHNMNSATSE---IYQ 330 (341)
Q Consensus 271 ~~~~~~~~~fg~~~~~~~a~~~~i------~~l----g~IP~d~~i-----~~a~~--~g~P~v~~~p~s~~a~---~~~ 330 (341)
.+++|.++.| +++- .++ |+=|...+. |.... +++=++.+.| |.+++ .|.
T Consensus 337 -G~~RRf~~~g---------~~~~~~n~g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k~~r~v~~FQP-HrYsRT~~~~~ 405 (491)
T TIGR01082 337 -GVKRRFEILG---------ECNGGNNNGTVLLIDDYAHHPTEIKATLAAARQVYPDKNRRIVVVFQP-HRYSRTKDLFD 405 (491)
T ss_pred -CCCHHHHHHH---------HCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHH
T ss_conf -9731012010---------027898752799996589997899999999987521179579999749-85678998899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780831|r 331 EISDRIQ 337 (341)
Q Consensus 331 ~iA~~i~ 337 (341)
+.|+-+.
T Consensus 406 ~F~~~L~ 412 (491)
T TIGR01082 406 DFAKVLS 412 (491)
T ss_pred HHHHHHH
T ss_conf 9999997
No 456
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=64.92 E-value=7.7 Score=18.91 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=34.2
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 4201024466654257899998987235775069882246787
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341)
.++|.|+ |==||||++.-++..+...|++++++-...+.-
T Consensus 91 l~vigvT---GTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~ 130 (475)
T COG0769 91 LKVIGVT---GTNGKTTTTSLLAQILKKLGKKTALIGTEGDEL 130 (475)
T ss_pred CEEEEEC---CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf 5189863---878579999999999886298258999776632
No 457
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=64.82 E-value=5 Score=20.18 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=20.7
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0244666542578999989872357
Q gi|254780831|r 99 AVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 99 av~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
.+.+|--|+||||++-.||-.+--.
T Consensus 40 lLf~GppG~GKTt~a~~la~~l~~~ 64 (318)
T PRK00440 40 LLFAGPPGTGKTTAALALARELYGE 64 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9888959988999999999997698
No 458
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=64.79 E-value=6.8 Score=19.26 Aligned_cols=30 Identities=37% Similarity=0.684 Sum_probs=22.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2010244666542578999989872357750698822
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
-+||+. ||--|||||+-=.|. |.++.++--
T Consensus 9 G~Vaiv-G~PNvGKSTL~N~l~------~~k~siVS~ 38 (296)
T PRK00089 9 GFVAIV-GRPNVGKSTLLNALV------GQKISIVSP 38 (296)
T ss_pred EEEEEE-CCCCCCHHHHHHHHH------CCCEEEECC
T ss_conf 999999-899988899999996------896176149
No 459
>PRK06841 short chain dehydrogenase; Provisional
Probab=64.64 E-value=5.2 Score=20.05 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=29.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+.+ |..|++.|.+|.+.|-|
T Consensus 16 KvalVTGas~GIG~ai-----A~~la~~Ga~V~i~d~~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAI-----AELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9999979677899999-----99999879999999698
No 460
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=64.55 E-value=10 Score=18.10 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
.+++|+ |.-++|||++.-..+--+...++.+..+|+-
T Consensus 21 ~~ivi~-G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~ 57 (223)
T pfam01637 21 PIIVVY-GPRRCGKTALLREFLEELRELGYRVIYYDPL 57 (223)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHCCCCCCEEEEEECH
T ss_conf 189998-6887879999999998633468528999514
No 461
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=64.47 E-value=10 Score=18.15 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 20102446665425789999898723577506988224678
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341)
+|-++- |--|-||||+-.-.+.-+...--.|.+=-.|+..
T Consensus 28 ~iTs~I-GPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 28 GITSII-GPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67 (252)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 636888-8998648889999998526678638981166256
No 462
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=64.45 E-value=5.3 Score=20.02 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 2010244666542578999989872357
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
-+|||= |-.|.||||++--||-.|.-.
T Consensus 5 ~~IAID-GPagsGKsTvak~lA~~Lg~~ 31 (222)
T COG0283 5 IIIAID-GPAGSGKSTVAKILAEKLGFH 31 (222)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHCCC
T ss_conf 499976-887568478999999980986
No 463
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=64.35 E-value=11 Score=17.97 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=31.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 102446665425789999898723577506988224678765
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341)
+.+.+|==|-||||+--+|... .+.|+|++++=.|+..-++
T Consensus 2 v~iitGFLGsGKTTll~~ll~~-~~~~~~~avI~Ne~g~~~i 42 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRD-NREGLKIAVIVNDFGETGI 42 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHH
T ss_conf 6999348878899999999984-4489847999933653020
No 464
>PRK12828 short chain dehydrogenase; Provisional
Probab=64.23 E-value=5.2 Score=20.04 Aligned_cols=33 Identities=39% Similarity=0.679 Sum_probs=29.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+.+ |..|++.|.+|.+.|-+
T Consensus 8 KvalITGas~GIG~ai-----a~~la~~Ga~V~i~~~~ 40 (239)
T PRK12828 8 KVVAITGGFGGLGRAT-----AAWLAARGARVALIGRG 40 (239)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899947254899999-----99999879989999798
No 465
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=64.08 E-value=8.4 Score=18.68 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=22.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 420102446665425789999898723577506988224
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
++|+.|-+| = +=...|+.|++.|++|.++|.+
T Consensus 2 ~~V~VIGaG--i-----vGlstA~~La~~G~~VtviDr~ 33 (410)
T PRK12409 2 SHIAVIGAG--I-----TGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred CCEEEECCH--H-----HHHHHHHHHHHCCCCEEEEECC
T ss_conf 959998983--9-----9999999999789918999698
No 466
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=63.96 E-value=5.3 Score=19.98 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=19.4
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 42010244666542578999989872
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACAL 120 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~al 120 (341)
.++++|+ |=-||||||+.-++.-.|
T Consensus 4 ~kvvvit-GVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVIT-GVPGVGKTTVLKIALKEL 28 (189)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHH
T ss_conf 5599997-579887266999999877
No 467
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=63.84 E-value=11 Score=17.82 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=4.0
Q ss_pred CCCCCCHHHH
Q ss_conf 6665425789
Q gi|254780831|r 103 GKGGVGKSTT 112 (341)
Q Consensus 103 gKGGVGKSt~ 112 (341)
|---|||||+
T Consensus 10 GNPNvGKTtl 19 (653)
T COG0370 10 GNPNVGKTTL 19 (653)
T ss_pred CCCCCCHHHH
T ss_conf 6998548999
No 468
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=63.82 E-value=5.5 Score=19.87 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|++.|+.|=+|.|+. +|..|++.|++|.++|.+.
T Consensus 9 K~alITG~s~GIG~a-----ia~~la~~Ga~V~~~~r~~ 42 (253)
T PRK08220 9 KTVWVTGAAQGIGYA-----VALAFVEAGAKVIGFDQAF 42 (253)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCH
T ss_conf 989995885689999-----9999998799999997887
No 469
>COG1160 Predicted GTPases [General function prediction only]
Probab=63.79 E-value=6.7 Score=19.31 Aligned_cols=66 Identities=15% Similarity=0.329 Sum_probs=33.7
Q ss_pred HHCCCCCCEEEEECCCCCC------C--CCCHHHHCCC----CCCEEEE-ECCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 5213777589974556444------2--1000000022----3402674-214431134566677764001221144554
Q gi|254780831|r 197 NVVWGQLDFLLIDMPPGTG------D--AHLTIAQKIP----LSGVVIV-STPQDLALIDVKRAISMYQKMNIPIIGMIE 263 (341)
Q Consensus 197 ~~~w~~~D~liiD~ppG~g------d--~~lsl~~~~~----~~~~iiV-ttP~~~s~~da~r~~~~~~~~~~~i~GiV~ 263 (341)
+..|++..|.+|||. |.- + +.+|+....+ .+-+++| ---++.+-.|.+ ...+..+.+.++. ||+
T Consensus 220 ~~e~~~~~~~liDTA-GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~g~~~v-Ivv 296 (444)
T COG1160 220 EFERDGRKYVLIDTA-GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEEAGRGIV-IVV 296 (444)
T ss_pred EEEECCEEEEEEECC-CCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHH-HHHHHHHCCCCEE-EEE
T ss_conf 589988189999877-8774664124268875054676786568899999888783688999-9999997589749-999
Q ss_pred HH
Q ss_conf 42
Q gi|254780831|r 264 NM 265 (341)
Q Consensus 264 NM 265 (341)
|.
T Consensus 297 NK 298 (444)
T COG1160 297 NK 298 (444)
T ss_pred EC
T ss_conf 75
No 470
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=63.78 E-value=9.2 Score=18.41 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.3
Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 542010244666542578999989872357750698822
Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
.+..|||+ |-=||||+|.-||..|...|+.-..+=.
T Consensus 106 ~~~~iaVa---GTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 106 FRTSIAVA---GTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CCEEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 77169994---7887540899999999867999879977
No 471
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=63.75 E-value=9.5 Score=18.30 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCC-CCEEEEEECC
Q ss_conf 666542578999989872357-7506988224
Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNK-GKNVAILDAD 133 (341)
Q Consensus 103 gKGGVGKSt~s~nLa~ala~~-G~~V~liDaD 133 (341)
|.=|.||||+-..|+..+.+- |.+|-.+|-|
T Consensus 448 GpTGsGKTvll~~l~~q~~ry~~~~vf~FDkd 479 (815)
T PRK13873 448 GPTGAGKSVLLALMALQFRRYPGSQVFAFDFG 479 (815)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 88999899999999999864489848999789
No 472
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=63.65 E-value=11 Score=17.80 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=14.5
Q ss_pred CHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 989997502882179977999899999999999999
Q gi|254780831|r 303 DMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341)
Q Consensus 303 d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341)
+.+|+++.+.|. + +..--..|.+|-+.+.+
T Consensus 264 gCaV~~Ave~g~---I---~~~Ry~sY~~l~~el~~ 293 (298)
T PRK00098 264 GCAVKAAVEEGE---I---APSRYELYLQILEEIEN 293 (298)
T ss_pred CCHHHHHHHCCC---C---CHHHHHHHHHHHHHHHH
T ss_conf 858899998599---8---89999999999999987
No 473
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=63.64 E-value=5.3 Score=19.99 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 244666542578999989872357
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
..||--|+||||+|--||-+|...
T Consensus 42 LFsGprG~GKTt~ArilAk~LnC~ 65 (560)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNCV 65 (560)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 632899878999999999996599
No 474
>PRK12829 short chain dehydrogenase; Provisional
Probab=63.64 E-value=5.5 Score=19.86 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=29.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|-+|.|+.+ |..|++.|.+|.+.|-+
T Consensus 12 KvalVTGgs~GIG~ai-----A~~la~~Ga~V~i~~r~ 44 (264)
T PRK12829 12 LRVLVTGGASGIGRAI-----AEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9799947376899999-----99999879989999799
No 475
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=63.55 E-value=7 Score=19.19 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
..+|+. |+-|.||||++-.|.--+.-.--++.+=+-|+
T Consensus 500 e~vaIv-G~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 500 EKVAIV-GRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCCCCCCEEEECCEEH
T ss_conf 889998-79999889999998367888885599998727
No 476
>KOG0465 consensus
Probab=63.52 E-value=5.9 Score=19.68 Aligned_cols=23 Identities=57% Similarity=0.651 Sum_probs=12.9
Q ss_pred HHHHHCCCCCEEEEEECCC-CCCCC
Q ss_conf 8987235775069882246-78765
Q gi|254780831|r 116 IACALKNKGKNVAILDADV-YGPSI 139 (341)
Q Consensus 116 La~ala~~G~~V~liDaDi-~~ps~ 139 (341)
++-||+..|--- |+||=+ |.||=
T Consensus 287 ~GSAlKNkGVQP-lLDAVvdYLPsP 310 (721)
T KOG0465 287 CGSALKNKGVQP-LLDAVVDYLPSP 310 (721)
T ss_pred ECHHHCCCCCCH-HHHHHHHHCCCH
T ss_conf 532223567415-899998767993
No 477
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=63.50 E-value=6.5 Score=19.41 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=25.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2010244666542578999989872357750698822
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDA 132 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDa 132 (341)
-=|.|+..=|||| ++|++| |+++||.|.-.=.
T Consensus 150 GpVlVTGAtGGVG--S~Av~~---L~~lGY~V~A~tG 181 (330)
T TIGR02823 150 GPVLVTGATGGVG--SLAVAI---LSKLGYEVVASTG 181 (330)
T ss_pred CCEEEECCCCCHH--HHHHHH---HHHCCCEEEEEEC
T ss_conf 8788706778778--999999---9837976999737
No 478
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=63.33 E-value=6.5 Score=19.40 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=34.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--------CCCCCEECCC
Q ss_conf 2446665425789999898723577506988224678--------7653100024
Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG--------PSIPKLLKIS 146 (341)
Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~--------ps~~~~lg~~ 146 (341)
|+--|=|.|||.+++-.|+.-|-.|+.|-++-..=|- ..+-..||+.
T Consensus 94 IaEM~TGEGKTL~atl~a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~LGLs 148 (381)
T pfam07517 94 IAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLS 148 (381)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 2588769981199999999997379974899758888688999979999984860
No 479
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=63.29 E-value=7.9 Score=18.86 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=30.9
Q ss_pred HCCCCCCEEEEECCCCCC------C--CCCHHHHCC----CCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 213777589974556444------2--100000002----234026742144-311345666777640012211445544
Q gi|254780831|r 198 VVWGQLDFLLIDMPPGTG------D--AHLTIAQKI----PLSGVVIVSTPQ-DLALIDVKRAISMYQKMNIPIIGMIEN 264 (341)
Q Consensus 198 ~~w~~~D~liiD~ppG~g------d--~~lsl~~~~----~~~~~iiVttP~-~~s~~da~r~~~~~~~~~~~i~GiV~N 264 (341)
..|.+..|.++||+ |.- | ..+++.+.. ..|-+++|.-.+ ..+-.| .+...+..+.+.|++ ++.|
T Consensus 215 ~~~~~~~~~~iDTa-Girkk~k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD-~~i~~~i~~~~k~~i-i~~N 291 (429)
T TIGR03594 215 FERNGKKYLLIDTA-GIRRKGKVTEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQD-LRIAGLALEAGKALI-IVVN 291 (429)
T ss_pred EEECCEEEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHHCCCCEE-EEEE
T ss_conf 99999089999898-87636642304779999999999874477999997665884888-999998987399769-9997
Q ss_pred H
Q ss_conf 2
Q gi|254780831|r 265 M 265 (341)
Q Consensus 265 M 265 (341)
.
T Consensus 292 K 292 (429)
T TIGR03594 292 K 292 (429)
T ss_pred H
T ss_conf 2
No 480
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=63.26 E-value=5.7 Score=19.78 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=29.3
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|++.|+.|=+|.|+.+ |..|++.|.+|++.|-|-
T Consensus 4 KvalITG~s~GIG~ai-----a~~la~~Ga~V~i~~r~~ 37 (250)
T TIGR03206 4 KTAIVTGGGGGIGGAT-----CRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCH
T ss_conf 9999968576899999-----999998799999997988
No 481
>PRK05872 short chain dehydrogenase; Provisional
Probab=63.07 E-value=5.6 Score=19.85 Aligned_cols=34 Identities=35% Similarity=0.544 Sum_probs=30.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 201024466654257899998987235775069882246
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi 134 (341)
|++.|+.|=+|.|+. +|..|++.|.+|.++|-|-
T Consensus 10 KvalITGassGIG~a-----iA~~la~~Ga~Vvl~dr~~ 43 (296)
T PRK05872 10 KVVFVTGAARGVGAE-----LARRLHARGAKVALVDLEE 43 (296)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCH
T ss_conf 879992710589999-----9999998799899998999
No 482
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=63.00 E-value=4.7 Score=20.33 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=24.9
Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6542010244666542578999989872357
Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNK 123 (341)
Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~ 123 (341)
-.++-+++-||=-|+||||+.+-|=.+|.+.
T Consensus 239 aL~~~f~li~GGPGTGKTTTv~~LL~al~~~ 269 (753)
T TIGR01447 239 ALKSNFSLITGGPGTGKTTTVARLLLALIKQ 269 (753)
T ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8608768998798897789999999999998
No 483
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=62.89 E-value=9.6 Score=18.27 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=11.9
Q ss_pred CCCCCCCHHHHHHHHHHHHC
Q ss_conf 46665425789999898723
Q gi|254780831|r 102 SGKGGVGKSTTVVNIACALK 121 (341)
Q Consensus 102 SgKGGVGKSt~s~nLa~ala 121 (341)
+|=-|.|||.++.||...|+
T Consensus 7 ~G~pGtGKTvv~l~l~~~l~ 26 (348)
T pfam09848 7 TGGPGTGKTVVALNLFAELS 26 (348)
T ss_pred ECCCCCCHHHHHHHHHHHHH
T ss_conf 77799389999999999986
No 484
>KOG1384 consensus
Probab=62.83 E-value=6.8 Score=19.29 Aligned_cols=32 Identities=34% Similarity=0.609 Sum_probs=25.5
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+++.| +|--|.|||-+|++||.-|... +|-+|
T Consensus 8 KVvvI-~G~TGsGKSrLaVdLA~rf~~E-----IINsD 39 (348)
T KOG1384 8 KVVVI-MGATGAGKSRLAVDLATRFPGE-----IINSD 39 (348)
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHCCCE-----EECCC
T ss_conf 59999-5577777046678889757864-----65156
No 485
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=62.75 E-value=12 Score=17.69 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.4
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2010244666542578999989872357750698822467
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341)
..+++. |+=|-||||+.--|.-.+.-..=++.+=+-|+.
T Consensus 48 e~vaIv-G~sGsGKSTL~~ll~gl~~p~~G~I~idg~di~ 86 (257)
T cd03288 48 QKVGIC-GRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86 (257)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHCCCCCCCEEEECCEEHH
T ss_conf 999999-999981999999996056678888999989968
No 486
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=62.75 E-value=5.8 Score=19.76 Aligned_cols=29 Identities=41% Similarity=0.549 Sum_probs=24.3
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 42010244666542578999989872357750
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKN 126 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~ 126 (341)
.+||+|+ |=+||||+.--|+..|+..|+.
T Consensus 103 ~kvIaIT---GS~GKTTTKe~la~iL~~~~~v 131 (451)
T COG0770 103 AKVIAIT---GSNGKTTTKEMLAAILSTKGKV 131 (451)
T ss_pred CCEEEEE---CCCCCHHHHHHHHHHHHHCCEE
T ss_conf 9689995---8997076999999998636807
No 487
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.57 E-value=5.7 Score=19.77 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=29.6
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 420102446665425789999898723577506988224
Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
+||..|+.|=+|.|+.+ |..|++.|++|.+.|..
T Consensus 5 ~KValVTGgs~GIG~ai-----a~~la~~Ga~V~i~~~~ 38 (259)
T PRK12745 5 RPVALVTGGRRGIGLGI-----ALALAAGGFDLAINDRP 38 (259)
T ss_pred CCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 99999968678999999-----99999879989999798
No 488
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=62.51 E-value=6.1 Score=19.61 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=29.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|-+|.|+. +|..|++.|.+|.+.|-+
T Consensus 13 KvalVTG~s~GIG~a-----ia~~la~~Ga~V~i~~~~ 45 (259)
T PRK08213 13 KTALVTGGSRGLGLQ-----IAEALGEAGARVVLSARK 45 (259)
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECC
T ss_conf 989994877689999-----999999869999999798
No 489
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=62.46 E-value=6.3 Score=19.49 Aligned_cols=19 Identities=53% Similarity=0.649 Sum_probs=12.4
Q ss_pred CEECCCCCCCCCHHHHHHHH
Q ss_conf 01024466654257899998
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNI 116 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nL 116 (341)
+|||. |+--|||||+==-|
T Consensus 281 ~VAIV-GRPNVGKSTLFNRL 299 (714)
T PRK09518 281 TVAIV-GRPNVGKSTLVNRI 299 (714)
T ss_pred EEEEE-CCCCCCHHHHHHHH
T ss_conf 79998-99987689999886
No 490
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.34 E-value=6.2 Score=19.55 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=29.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|-+|.|+.+ |..|++.|.+|.+.|-+
T Consensus 6 Kv~lITGgs~GIG~a~-----a~~la~~G~~V~~~~r~ 38 (246)
T PRK05653 6 KTALVTGASRGIGRAI-----ALRLAADGARVVIYDSN 38 (246)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 8899938975899999-----99999879999999799
No 491
>PRK06346 consensus
Probab=62.26 E-value=6.2 Score=19.56 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=29.6
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+.+ |..|++.|.+|.+.|-|
T Consensus 6 Kv~lITGgs~GIG~a~-----a~~la~~Ga~V~i~~r~ 38 (251)
T PRK06346 6 KVAIVTGAASGMGKSI-----AELFAKEGAKVVVADLN 38 (251)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 8899947578899999-----99999879989999798
No 492
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=62.26 E-value=10 Score=18.15 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--CCCCCEECCC
Q ss_conf 446665425789999898723577506988224678--7653100024
Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYG--PSIPKLLKIS 146 (341)
Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~--ps~~~~lg~~ 146 (341)
..|--|||||.++-.||-.|-....+...+|+--|. .++..++|..
T Consensus 8 ~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~ 55 (168)
T pfam07724 8 FLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAP 55 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCC
T ss_conf 889899899999999999967985344885575654256999870589
No 493
>PRK06921 hypothetical protein; Provisional
Probab=62.24 E-value=7.7 Score=18.91 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=26.5
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEE
Q ss_conf 10244666542578999989872357-75069882
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNK-GKNVAILD 131 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liD 131 (341)
++.. |.-|+|||-+++-+|-.|-+. |..|+.+.
T Consensus 119 l~f~-G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~ 152 (265)
T PRK06921 119 IALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFP 152 (265)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7997-289898899999999999996297199988
No 494
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=62.19 E-value=6.9 Score=19.26 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=13.5
Q ss_pred EECCCCCCCCCHHHHHHHH
Q ss_conf 1024466654257899998
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNI 116 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nL 116 (341)
||+. |+--|||||+--.|
T Consensus 5 V~iv-G~pN~GKSTL~N~l 22 (174)
T cd01895 5 IAII-GRPNVGKSSLVNAL 22 (174)
T ss_pred EEEE-CCCCCCHHHHHHHH
T ss_conf 9999-89999899999998
No 495
>PRK06949 short chain dehydrogenase; Provisional
Probab=62.15 E-value=6 Score=19.64 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|-+|.|+.+ |..|++.|.+|.+.|-+
T Consensus 10 KvalVTGas~GIG~ai-----A~~la~~Ga~V~i~~~~ 42 (258)
T PRK06949 10 KVALVTGASSGLGQRF-----AQVLSQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899958577999999-----99999879999999698
No 496
>PRK08589 short chain dehydrogenase; Validated
Probab=61.94 E-value=5.7 Score=19.78 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=28.7
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|-+|.|+.+ |..|++.|.+|.+.|.+
T Consensus 7 KvalVTGas~GIG~ai-----A~~la~~Ga~Vv~~d~~ 39 (272)
T PRK08589 7 KVAVITGASTGIGQAS-----AIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899978256999999-----99999869999998382
No 497
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.93 E-value=6.3 Score=19.51 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=29.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.+=.|.|+.+ |..|++.|.+|.++|-+
T Consensus 7 KvalITGas~GIG~ai-----A~~la~~Ga~V~l~~r~ 39 (238)
T PRK07666 7 KNALITGAGRGIGRAV-----AIALAKEGVNVGLLARS 39 (238)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899916377899999-----99999879989999899
No 498
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=61.89 E-value=6.5 Score=19.39 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=0.0
Q ss_pred CEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 010244666542578999989872
Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACAL 120 (341)
Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~al 120 (341)
||||= |--|.||||+|--||..|
T Consensus 36 IIAID-GPAGSGKSTVAk~lA~~L 58 (863)
T PRK12269 36 IIALD-GPAGSGKSSVCRLLASRL 58 (863)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
T ss_conf 99986-898678899999999982
No 499
>PRK07825 short chain dehydrogenase; Provisional
Probab=61.85 E-value=5.9 Score=19.68 Aligned_cols=33 Identities=45% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.+-+|.|+.+ |..|++.|.+|.+.|-|
T Consensus 6 KvvlITGassGIG~a~-----A~~la~~Ga~V~i~~r~ 38 (273)
T PRK07825 6 KVIAITGGARGIGLAT-----ARALAALGAKVAIGDLD 38 (273)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 8899926233999999-----99999879989999799
No 500
>PRK06057 short chain dehydrogenase; Provisional
Probab=61.81 E-value=6.3 Score=19.51 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=0.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20102446665425789999898723577506988224
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341)
|++.|+.|=+|.|+.+ |..|++.|.+|.+.|.|
T Consensus 8 KvalVTGas~GIG~ai-----a~~la~~Ga~Vvi~d~~ 40 (255)
T PRK06057 8 RVAVITGGASGIGLAT-----ARRMRAEGATVVVGDID 40 (255)
T ss_pred CEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECC
T ss_conf 9899968488899999-----99999869989999698
Done!