HHsearch alignment for GI: 254780831 and conserved domain: pfam00142
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=100.00 E-value=1.4e-45 Score=322.66 Aligned_cols=229 Identities=24% Similarity=0.243 Sum_probs=174.0
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC----CCC--------CCCCCCC
Q ss_conf 2010244666542578999989872357750698822467876531000245631123----344--------5766322
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD----KKF--------LKPKENY 163 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~--------i~p~~~~ 163 (341)
T Consensus 1 r~iai-~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~ 79 (269)
T pfam00142 1 RKIAI-YGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYG 79 (269)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCC
T ss_conf 95899-89997688999999999999879909998458998741444389888847877604677022407450133778
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 3032233343552210001342024789998675213777589974556444--21000000022340267421443113
Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341)
Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341)
T Consensus 80 gv~~i~~~~-~e~~~~~~~~~--~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~i~~~-~A~~viiv~t~E~~al 155 (269)
T pfam00142 80 GIRCVESGG-PEPGVGCAGRG--VITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREG-KAQEVYIVTSGEMMAL 155 (269)
T ss_pred CCEEEECCC-CCCCCCCCHHH--HHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCCHHHC-CCCEEEEEECCCHHHH
T ss_conf 726886899-86563211078--9999999998210212888985336740243400533443-5887999828947899
Q ss_pred HHHHHHHHHH----HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE
Q ss_conf 4566677764----001221144554420245877886651247765899999847978988279989997502882179
Q gi|254780831|r 242 IDVKRAISMY----QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341)
Q Consensus 242 ~da~r~~~~~----~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341)
T Consensus 156 ~~a~~l~~~i~~~~~~~~~~i~giv~n~~----------~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v~eA~~~g~pv~ 225 (269)
T pfam00142 156 YAANNICKGILKYAKSGGVRLGGLICNSR----------KVDDERELIDAFAEALGTQMIHFVPRDNIVQKAELNKQTVI 225 (269)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCC----------CCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEE
T ss_conf 99999999999985057962789982686----------54115799999999819947997799826875423498179
Q ss_pred EECCCCHHHHHHHHHHHHHHHH
Q ss_conf 9779998999999999999998
Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQF 339 (341)
Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~ 339 (341)
T Consensus 226 ~~~P~S~~A~ay~~LA~~il~~ 247 (269)
T pfam00142 226 EYAPTCNQAKEYRELARKIIEN 247 (269)
T ss_pred EECCCCHHHHHHHHHHHHHHHC
T ss_conf 9899998999999999999858