HHsearch alignment for GI: 254780831 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.66 E-value=0.03 Score=34.93 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=31.3
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 102446665425789999898723-5775069882246
Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADV 134 (341)
Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi 134 (341)
T Consensus 21 l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm 58 (186)
T pfam03796 21 LIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEM 58 (186)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 79999679998799999999999997099668754755