HHsearch alignment for GI: 254780831 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=99.68 E-value=1.4e-16 Score=130.49 Aligned_cols=131 Identities=24% Similarity=0.323 Sum_probs=82.2
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355
Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341)
Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341)
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a------~~~~~~~~~----~~v~----~~~ 67 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENA------LRKGTWDPA----CEIF----NAD 67 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH------HHCCCCCCC----CCEE----CCC
T ss_conf 37999617998659999999999999689959999689986889999987------646888876----5222----056
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113456667776400
Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQK 253 (341)
Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~ 253 (341)
T Consensus 68 -~~------~~l~~~~~~~----~~~~yD~VIIDtpg~~s~~~~~AI--~~ADlVLIP~qpSplD~~~a~~t~~~i~~ 132 (231)
T pfam07015 68 -EL------PLLEQAYEHA----EGSGFDYALADTHGGSSELNNTII--ASSDLLLIPTMLTPLDIDEALATYRYVIE 132 (231)
T ss_pred -CH------HHHHHHHHHH----HHCCCCEEEECCCCCCCHHHHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -60------1589999988----657999899839985758999999--97898997789982339999999999999