HHsearch alignment for GI: 254780832 and conserved domain: COG1113
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].
Probab=97.73 E-value=0.0036 Score=38.55 Aligned_cols=308 Identities=20% Similarity=0.230 Sum_probs=156.8
Q ss_pred HHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCH
Q ss_conf 998973230457367667899999714777777778993462048889899999999999998874107-----899813
Q gi|254780832|r 17 YLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILLLLRAD-----NDGEGG 91 (628)
Q Consensus 17 ~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~~l~ad-----n~GEGG 91 (628)
T Consensus 19 HIqlIAiG---GaIGtGLFlGSg~~I~~AGP------S---------vl---LaY~I~G~~~f~iMRaLGEm~~~~p~~g 77 (462)
T COG1113 19 HIQLIAIG---GAIGTGLFLGSGSAIAMAGP------S---------VL---LAYLIAGIFVFLIMRALGEMLVANPVSG 77 (462)
T ss_pred HHHHHHHH---HHHHHCCCCCCCCHHHHCCC------H---------HH---HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999974---15643200156401432086------9---------99---9999999999999998878887088888
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 8999999987267554257789999999996500346999999987246642736676128999999999997500018-
Q gi|254780832|r 92 ILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGT- 170 (628)
Q Consensus 92 i~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt- 170 (628)
T Consensus 78 SF~~~a~--~~lG~~------Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~--al~~~~l~~~~NL~sVk 147 (462)
T COG1113 78 SFSDYAR--KYLGPW------AGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVF--ALAAVVLLLAVNLISVK 147 (462)
T ss_pred CHHHHHH--HHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 3999999--871624------7889899999999999999999999999886379717999--99999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --9999984599999999999999986501---874444679689999998374358-9999899998510878743645
Q gi|254780832|r 171 --KGVACFFSPIMVAWLLMITVSGLIHISD---DWGILAAFNPMYALHMVFGKGTIS-LVVLGSVFLTITGAEALYADLG 244 (628)
Q Consensus 171 --~~~g~~F~pi~~lwf~~i~~~gi~~i~~---~p~vl~a~~P~~~~~~~~~~~~~g-~~~lg~v~La~TG~EAl~advg 244 (628)
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~ 227 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAA 227 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87788999999999999999999999995115799877653331237881887569999999999999854999999988
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHC-CH----HHHHHHHHHHCC----CCH--HHHHHHHHHHHHHHHCCCC
Q ss_conf 467116--9999999999999999747868735-92----455203687278----632--8999999999999960301
Q gi|254780832|r 245 HFGRKP--IQYAWMVIFPALAINYLGQGALVLS-NP----EAIKDPFYMMFG----GWF--LPFAVLTATCATVIASQAV 311 (628)
Q Consensus 245 hF~~~~--i~~aw~~v~~~L~l~y~Gq~a~ll~-~~----~~~~~~f~~~~p----~~~--~~~~v~~at~a~iIaSqa~ 311 (628)
T Consensus 228 Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVL--tAa~S~~NSg 305 (462)
T COG1113 228 EAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVL--TAALSALNSG 305 (462)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEE--EHHHHCCCCC
T ss_conf 61280667789884232999999999999986131412368789958999986399420332368986--0002002444
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHH
Q ss_conf 00258999999975998865687038876571100689999999988877
Q gi|254780832|r 312 ITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFV 361 (628)
Q Consensus 312 isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lv 361 (628)
T Consensus 306 lystsRmL~~la~~g~APk~-~~klsk~---gVP~~ai~~s~~~~~~~V~ 351 (462)
T COG1113 306 LYSTSRMLYSLAKQGDAPKA-FAKLSKR---GVPVNAILLSAVVLLLGVV 351 (462)
T ss_pred CCCCCHHHHHHHHCCCCCHH-HHHCCCC---CCCHHHHHHHHHHHHHHHH
T ss_conf 43430578777635765476-7640646---8879999999999999999