HHsearch alignment for GI: 254780832 and conserved domain: TIGR00909
>TIGR00909 2A0306 amino acid transporter; InterPro: IPR004758 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Some proteins in this group are involved in the transport of the cationic amino acids (arginine,lysine and ornithine)..
Probab=97.81 E-value=0.0027 Score=39.39 Aligned_cols=303 Identities=14% Similarity=0.106 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
Q ss_conf 9999999887410789981389999999872675542577899999999965003469999999872466427-------
Q gi|254780832|r 72 VVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIA------- 144 (628)
Q Consensus 72 iv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~------- 144 (628)
T Consensus 52 f~AL~YaEla~~~P~~Gs~Y~y~~-----------~alGe~~afi~GW~l~le~~va~a~vavgw~~Y~~~~L~G~~G~~ 120 (451)
T TIGR00909 52 FIALVYAELAAMLPVAGSVYTYAY-----------EALGELVAFIIGWVLILEYGVAVAAVAVGWSGYLQEFLEGFVGLD 120 (451)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999988721365676035698-----------889999999998999999999999999999999998721233777
Q ss_pred --------CCCCC--CHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHH
Q ss_conf --------36676--128-99-99999999975000189999984599999999999999986501---87444467968
Q gi|254780832|r 145 --------PELDN--FII-LI-ALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISD---DWGILAAFNPM 209 (628)
Q Consensus 145 --------P~l~~--~~v-~i-ai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~---~p~vl~a~~P~ 209 (628)
T Consensus 121 LP~~Lta~Pg~ggGtft~fNlpal~~v~~~~~~l~~G~keS~~~N~Ilv~lK~~~~llF~~~ga~~~~~~P~~~SN~~p- 199 (451)
T TIGR00909 121 LPAVLTAKPGDGGGTFTVFNLPALLIVLFLTYILYLGAKESGKVNSILVVLKVLAVLLFAALGAIHFKSNPLLVSNYTP- 199 (451)
T ss_pred CCCCEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-
T ss_conf 8600161578987515452057999999999998761020433353256788999999999877642379861017743-
Q ss_pred HHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHH------HHHHH-HHHHHHHHHHHHHHHHH----H---H
Q ss_conf 99999983743589-999899998510878743645467116------99999-99999999999747868----7---3
Q gi|254780832|r 210 YALHMVFGKGTISL-VVLGSVFLTITGAEALYADLGHFGRKP------IQYAW-MVIFPALAINYLGQGAL----V---L 274 (628)
Q Consensus 210 ~~~~~~~~~~~~g~-~~lg~v~La~TG~EAl~advghF~~~~------i~~aw-~~v~~~L~l~y~Gq~a~----l---l 274 (628)
T Consensus 200 -----F~P~GfggV~~a~~l~F~Af~GF~~~~~aaEE~KnP~rdiP~~I~~SL~~~T~~Yvl~~a~~~G~~radvP~~~~ 274 (451)
T TIGR00909 200 -----FMPMGFGGVLAATALVFFAFIGFEAVSTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVRADVPFRQL 274 (451)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf -----311226899999999999987455540582324585225306899999999999999999999788605765863
Q ss_pred CCHH-HHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHH
Q ss_conf 5924-55203687-278632899999999999996030100258999999975998865687038876571100689999
Q gi|254780832|r 275 SNPE-AIKDPFYM-MFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLF 352 (628)
Q Consensus 275 ~~~~-~~~~~f~~-~~p~~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~l 352 (628)
T Consensus 275 ~~~~a~l~~~~~~~~~~~~g~~i~~~GAV~~~~~v~~~~~Yg~~RvlFAmSRDGllP~----slSk-vH~k~~tP~~~~~ 349 (451)
T TIGR00909 275 AGSEAPLSLVKVSDLGQKIGALIITAGAVISIASVMLATLYGTSRVLFAMSRDGLLPK----SLSK-VHPKTKTPHVSIL 349 (451)
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHH-HCCCCCCCCHHHH
T ss_conf 6897057898888740318999999859999999999998789999999986177530----3763-2344687504899
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998887773268889887899999999999899999999983
Q gi|254780832|r 353 LFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVC 396 (628)
Q Consensus 353 l~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lTt~l~~~~~~~~ 396 (628)
T Consensus 350 ~fs~~~~~la~~~P~~~la~l~s~g~L~~f~~v~v~v~~LR~~~ 393 (451)
T TIGR00909 350 IFSLLAALLASLVPLEALAELTSIGTLIAFALVNVAVIILRRRR 393 (451)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999984156889999999999999999999999870578