HHsearch alignment for GI: 254780832 and conserved domain: TIGR00911
>TIGR00911 2A0308 L-type amino acid transporter; InterPro: IPR004760 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. In this family of L-type amino acid transporters one example is the high affinity methionine permease from yeast.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=92.75 E-value=0.64 Score=24.03 Aligned_cols=407 Identities=19% Similarity=0.237 Sum_probs=216.0
Q ss_pred HHHHCCCEECCC-CC----CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCC
Q ss_conf 897323045736-76----678999997147777777789934620488898999999999----999988741078998
Q gi|254780832|r 19 MFESIGVVYGDI-GT----SVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVT----IKYILLLLRADNDGE 89 (628)
Q Consensus 19 ~~~alGvV~GDI-GT----SPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~----vKYv~~~l~adn~GE 89 (628)
T Consensus 63 ll~gv~iIvG~iiGSGIFvsP~GvL~~~GS----------------VGLaLi~WaV~G~~s~~GAl~YAELGttI~KS-- 124 (546)
T TIGR00911 63 LLSGVGIIVGTIIGSGIFVSPKGVLKNAGS----------------VGLALIVWAVCGIISIVGALVYAELGTTIPKS-- 124 (546)
T ss_pred EEEEEEEEECCEEECEEEECCCHHCCCCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf 888766887453414289804212024887----------------12889999999999999999985106631478--
Q ss_pred CHHHHHHHHHHHHCCCCCHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 138999999987267554257--------7899-9999999650034699999998724664273667612899999999
Q gi|254780832|r 90 GGILSLLALLLKKIPKRSTVL--------IALG-LAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILV 160 (628)
Q Consensus 90 GGi~aL~sl~~~~~~~~~~~~--------~~~g-ligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~ 160 (628)
T Consensus 125 GG~---Y~Y~~~~FG~L~aFl~~W~~~lvi~p~~~A~~aL~Fa~Y~L~P~--------f~~C~~P~~~--~r~va~~~~l 191 (546)
T TIGR00911 125 GGE---YAYILEVFGPLLAFLRLWIELLVIRPGSQAVIALVFATYILKPV--------FPDCEVPELA--IRLVAVLCVL 191 (546)
T ss_pred CCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCCCHHH--HHHHHHHHHH
T ss_conf 872---34688772773889887788876632899999999999860475--------5788887677--8899999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf 9997500018999998---4599999999999999986501-874444679689999998-3743589999899998510
Q gi|254780832|r 161 LLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISD-DWGILAAFNPMYALHMVF-GKGTISLVVLGSVFLTITG 235 (628)
Q Consensus 161 ~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~-~p~vl~a~~P~~~~~~~~-~~~~~g~~~lg~v~La~TG 235 (628)
T Consensus 192 ll~~vNc~SVk~atrvQ~~ft~~Kl~all~Ii~~G~v~LgKGLkG~~~~~~pk~AFEg~~~~~~g~~~LAlY~G~~Ay~G 271 (546)
T TIGR00911 192 LLTLVNCLSVKWATRVQDIFTACKLLALLLIIILGLVQLGKGLKGGVESLNPKNAFEGTETTSVGGLVLALYSGLFAYGG 271 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999855689999999999999999999999987987435545885334754567888777766778899888887755
Q ss_pred HHHHHCCCCCCCCH------HHHHHH---HHHHHHHHHHHHHHH---HHHHC-CHHHHHHHHHHHC-C---CCHHHHHHH
Q ss_conf 87874364546711------699999---999999999997478---68735-9245520368727-8---632899999
Q gi|254780832|r 236 AEALYADLGHFGRK------PIQYAW---MVIFPALAINYLGQG---ALVLS-NPEAIKDPFYMMF-G---GWFLPFAVL 298 (628)
Q Consensus 236 ~EAl~advghF~~~------~i~~aw---~~v~~~L~l~y~Gq~---a~ll~-~~~~~~~~f~~~~-p---~~~~~~~v~ 298 (628)
T Consensus 272 WnyLNf~teEv~nP~rtLP~AI~iS~~~vT~~YvltN~AYft~~sp~~lL~SeG~~avAV~F~~~~lGG~~~~~~P~~Vg 351 (546)
T TIGR00911 272 WNYLNFVTEEVKNPYRTLPIAIIISMPIVTFVYVLTNIAYFTVLSPEELLASEGKEAVAVDFGERLLGGVMSLIMPILVG 351 (546)
T ss_pred HHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 65441001221178665640268889999999999988998607978961456773888720002224689999999998
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCE-EEEECCCCCCC-CEECHHHHHHHHHHHHHHHHHCCCHHHHHH-HHH
Q ss_conf 999999996030100258999999975998865-68703887657-110068999999998887773268889887-899
Q gi|254780832|r 299 TATCATVIASQAVITGTFSLARQAIHLGFLPRM-KIFFTSETFKG-QVFLPSINLFLFVGVLLFVIGFRHSESLVA-AYG 375 (628)
Q Consensus 299 ~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~-~i~~tS~~~~g-qiYip~In~ll~ia~i~lvl~f~~s~~L~~-aYg 375 (628)
T Consensus 352 LS~FGsv---NG~~F~~SRL~f~~~REGhLP~~L~mi~~-~~~TPPmvG~P~~--~~~c~~T~l~~~~~D~y~Linn~~s 425 (546)
T TIGR00911 352 LSCFGSV---NGSVFSSSRLFFVAAREGHLPSILSMIHV-KRLTPPMVGLPSL--LIVCTLTLLMLFSGDIYSLINNFIS 425 (546)
T ss_pred HHHHCCH---HHHHHHHHHHHHHHCCCCCCHHHHHHCCC-CCCCCCCCHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8764013---26889999999960244500456733035-5688873006689--9999999976232308999988877
Q ss_pred HHHHHHHHHHHH--HHHHHHHH----HCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH--HCCC-C-----HHHHHHHHHH
Q ss_conf 999999999899--99999998----35856-9999999999999999999999985--2348-6-----9999999999
Q gi|254780832|r 376 ISVSGTMVISTI--MFSVFVHV----CWKWK-ISKVIIFLFPLLSIEMTFLGANLFK--VLDG-G-----YTPLLIASLC 440 (628)
Q Consensus 376 i~V~~tf~lTt~--l~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~K--f~~G-g-----W~~lli~~il 440 (628)
T Consensus 426 F~~~l~~~~avaGll~lR~~~PqGkie~~rPGiKv~~f~P~~f~l~~lfl~i~s~y~~P~~cgvgssmPY~~i~L~GvPv 505 (546)
T TIGR00911 426 FANWLFVALAVAGLLWLRYKKPQGKIELNRPGIKVPLFFPVLFLLACLFLIILSLYSKPVECGVGSSMPYFIIMLTGVPV 505 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999889987514898701059687206569889999999999874035887556541025788889986548
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf 9999-----998999999999864248
Q gi|254780832|r 441 IIVM-----WTWRRGTNLLSTLTRHAD 462 (628)
Q Consensus 441 ~~iM-----~~W~~G~~~~~~~~~~~~ 462 (628)
T Consensus 506 YflGGvYYvV~W~~KP~w~~~~i~s~T 532 (546)
T TIGR00911 506 YFLGGVYYVVWWQNKPKWFRSLIVSVT 532 (546)
T ss_pred HHHCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 762983699984037855665420143