HHsearch alignment for GI: 254780832 and conserved domain: TIGR00911

>TIGR00911 2A0308 L-type amino acid transporter; InterPro: IPR004760 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. In this family of L-type amino acid transporters one example is the high affinity methionine permease from yeast.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=92.75  E-value=0.64  Score=24.03  Aligned_cols=407  Identities=19%  Similarity=0.237  Sum_probs=216.0

Q ss_pred             HHHHCCCEECCC-CC----CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCC
Q ss_conf             897323045736-76----678999997147777777789934620488898999999999----999988741078998
Q gi|254780832|r   19 MFESIGVVYGDI-GT----SVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVT----IKYILLLLRADNDGE   89 (628)
Q Consensus        19 ~~~alGvV~GDI-GT----SPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~----vKYv~~~l~adn~GE   89 (628)
T Consensus        63 ll~gv~iIvG~iiGSGIFvsP~GvL~~~GS----------------VGLaLi~WaV~G~~s~~GAl~YAELGttI~KS--  124 (546)
T TIGR00911        63 LLSGVGIIVGTIIGSGIFVSPKGVLKNAGS----------------VGLALIVWAVCGIISIVGALVYAELGTTIPKS--  124 (546)
T ss_pred             EEEEEEEEECCEEECEEEECCCHHCCCCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf             888766887453414289804212024887----------------12889999999999999999985106631478--


Q ss_pred             CHHHHHHHHHHHHCCCCCHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             138999999987267554257--------7899-9999999650034699999998724664273667612899999999
Q gi|254780832|r   90 GGILSLLALLLKKIPKRSTVL--------IALG-LAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILV  160 (628)
Q Consensus        90 GGi~aL~sl~~~~~~~~~~~~--------~~~g-ligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~~~v~iai~il~  160 (628)
T Consensus       125 GG~---Y~Y~~~~FG~L~aFl~~W~~~lvi~p~~~A~~aL~Fa~Y~L~P~--------f~~C~~P~~~--~r~va~~~~l  191 (546)
T TIGR00911       125 GGE---YAYILEVFGPLLAFLRLWIELLVIRPGSQAVIALVFATYILKPV--------FPDCEVPELA--IRLVAVLCVL  191 (546)
T ss_pred             CCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCCCHHH--HHHHHHHHHH
T ss_conf             872---34688772773889887788876632899999999999860475--------5788887677--8899999999


Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf             9997500018999998---4599999999999999986501-874444679689999998-3743589999899998510
Q gi|254780832|r  161 LLFMLQSHGTKGVACF---FSPIMVAWLLMITVSGLIHISD-DWGILAAFNPMYALHMVF-GKGTISLVVLGSVFLTITG  235 (628)
Q Consensus       161 ~Lf~iq~rGt~~~g~~---F~pi~~lwf~~i~~~gi~~i~~-~p~vl~a~~P~~~~~~~~-~~~~~g~~~lg~v~La~TG  235 (628)
T Consensus       192 ll~~vNc~SVk~atrvQ~~ft~~Kl~all~Ii~~G~v~LgKGLkG~~~~~~pk~AFEg~~~~~~g~~~LAlY~G~~Ay~G  271 (546)
T TIGR00911       192 LLTLVNCLSVKWATRVQDIFTACKLLALLLIIILGLVQLGKGLKGGVESLNPKNAFEGTETTSVGGLVLALYSGLFAYGG  271 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999855689999999999999999999999987987435545885334754567888777766778899888887755


Q ss_pred             HHHHHCCCCCCCCH------HHHHHH---HHHHHHHHHHHHHHH---HHHHC-CHHHHHHHHHHHC-C---CCHHHHHHH
Q ss_conf             87874364546711------699999---999999999997478---68735-9245520368727-8---632899999
Q gi|254780832|r  236 AEALYADLGHFGRK------PIQYAW---MVIFPALAINYLGQG---ALVLS-NPEAIKDPFYMMF-G---GWFLPFAVL  298 (628)
Q Consensus       236 ~EAl~advghF~~~------~i~~aw---~~v~~~L~l~y~Gq~---a~ll~-~~~~~~~~f~~~~-p---~~~~~~~v~  298 (628)
T Consensus       272 WnyLNf~teEv~nP~rtLP~AI~iS~~~vT~~YvltN~AYft~~sp~~lL~SeG~~avAV~F~~~~lGG~~~~~~P~~Vg  351 (546)
T TIGR00911       272 WNYLNFVTEEVKNPYRTLPIAIIISMPIVTFVYVLTNIAYFTVLSPEELLASEGKEAVAVDFGERLLGGVMSLIMPILVG  351 (546)
T ss_pred             HHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             65441001221178665640268889999999999988998607978961456773888720002224689999999998


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCE-EEEECCCCCCC-CEECHHHHHHHHHHHHHHHHHCCCHHHHHH-HHH
Q ss_conf             999999996030100258999999975998865-68703887657-110068999999998887773268889887-899
Q gi|254780832|r  299 TATCATVIASQAVITGTFSLARQAIHLGFLPRM-KIFFTSETFKG-QVFLPSINLFLFVGVLLFVIGFRHSESLVA-AYG  375 (628)
Q Consensus       299 ~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~-~i~~tS~~~~g-qiYip~In~ll~ia~i~lvl~f~~s~~L~~-aYg  375 (628)
T Consensus       352 LS~FGsv---NG~~F~~SRL~f~~~REGhLP~~L~mi~~-~~~TPPmvG~P~~--~~~c~~T~l~~~~~D~y~Linn~~s  425 (546)
T TIGR00911       352 LSCFGSV---NGSVFSSSRLFFVAAREGHLPSILSMIHV-KRLTPPMVGLPSL--LIVCTLTLLMLFSGDIYSLINNFIS  425 (546)
T ss_pred             HHHHCCH---HHHHHHHHHHHHHHCCCCCCHHHHHHCCC-CCCCCCCCHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8764013---26889999999960244500456733035-5688873006689--9999999976232308999988877


Q ss_pred             HHHHHHHHHHHH--HHHHHHHH----HCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH--HCCC-C-----HHHHHHHHHH
Q ss_conf             999999999899--99999998----35856-9999999999999999999999985--2348-6-----9999999999
Q gi|254780832|r  376 ISVSGTMVISTI--MFSVFVHV----CWKWK-ISKVIIFLFPLLSIEMTFLGANLFK--VLDG-G-----YTPLLIASLC  440 (628)
Q Consensus       376 i~V~~tf~lTt~--l~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~K--f~~G-g-----W~~lli~~il  440 (628)
T Consensus       426 F~~~l~~~~avaGll~lR~~~PqGkie~~rPGiKv~~f~P~~f~l~~lfl~i~s~y~~P~~cgvgssmPY~~i~L~GvPv  505 (546)
T TIGR00911       426 FANWLFVALAVAGLLWLRYKKPQGKIELNRPGIKVPLFFPVLFLLACLFLIILSLYSKPVECGVGSSMPYFIIMLTGVPV  505 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999889987514898701059687206569889999999999874035887556541025788889986548


Q ss_pred             HHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf             9999-----998999999999864248
Q gi|254780832|r  441 IIVM-----WTWRRGTNLLSTLTRHAD  462 (628)
Q Consensus       441 ~~iM-----~~W~~G~~~~~~~~~~~~  462 (628)
T Consensus       506 YflGGvYYvV~W~~KP~w~~~~i~s~T  532 (546)
T TIGR00911       506 YFLGGVYYVVWWQNKPKWFRSLIVSVT  532 (546)
T ss_pred             HHHCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             762983699984037855665420143