HHsearch alignment for GI: 254780832 and conserved domain: pfam01490
>pfam01490 Aa_trans Transmembrane amino acid transporter protein. This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases.
Probab=93.28 E-value=0.53 Score=24.52 Aligned_cols=179 Identities=10% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20488898999999999999988741078998138999999987267554257----78999999999650034699999
Q gi|254780832|r 58 VIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVL----IALGLAGSALFIGDSMVTPALSV 133 (628)
Q Consensus 58 v~G~lSli~Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~----~~~gligaa~ll~D~iLTpAISV 133 (628)
T Consensus 34 ~~g~i~l~~~~~~s~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~---y~i~~~~~l 110 (405)
T pfam01490 34 IPGLILLLIVGLISLYTLHLLIRCSKYVDKKGKRRKSYGDLGYRLFGPKGKYIILFAQLLNLFGVCIV---YLIFAGDNL 110 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 99999999999999999999999998735589977689999999949649999999999999999999---999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHH
Q ss_conf 9987246642736676128999999999997500018999998--459999999999999998650187-4444679689
Q gi|254780832|r 134 LSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACF--FSPIMVAWLLMITVSGLIHISDDW-GILAAFNPMY 210 (628)
Q Consensus 134 lSavegl~~~~P~l~~~~v~iai~il~~Lf~iq~rGt~~~g~~--F~pi~~lwf~~i~~~gi~~i~~~p-~vl~a~~P~~ 210 (628)
T Consensus 111 ~~~~~~~~~~-~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (405)
T pfam01490 111 PAIFDSFFDD-CH-ISLVYFILIFGLIFIPLSFIPNLSALSILSLVAAVSSFYYIVILVVIVAELGVSTAQGVGLLGAST 188 (405)
T ss_pred HHHHHHHCCC-CC-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999864788-77-660665389999999998505588999999999999999999999998750566787877667554
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH---HHHHCCCCCC
Q ss_conf 99999837435899998999985108---7874364546
Q gi|254780832|r 211 ALHMVFGKGTISLVVLGSVFLTITGA---EALYADLGHF 246 (628)
Q Consensus 211 ~~~~~~~~~~~g~~~lg~v~La~TG~---EAl~advghF 246 (628)
T Consensus 189 ~-----~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 222 (405)
T pfam01490 189 N-----IKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSP 222 (405)
T ss_pred C-----CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 3-----317789999999999962233479999874792