Query gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 628
No_of_seqs 195 out of 803
Neff 5.8
Searched_HMMs 23785
Date Tue May 31 20:55:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780832.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 2.4E-13 1E-17 103.0 30.3 354 1-391 1-374 (445)
2 3gia_A Uncharacterized protein 99.7 3.7E-11 1.6E-15 88.8 39.7 310 67-402 49-374 (444)
3 2jln_A MHP1; hydantoin, transp 94.1 0.24 9.9E-06 25.4 15.7 43 153-195 144-186 (501)
4 3hlz_A Uncharacterized protein 53.6 1.3 5.6E-05 20.6 -1.2 14 494-507 57-70 (269)
5 3bkd_A Transmembrane domain of 28.5 19 0.00082 13.0 1.9 16 55-70 8-23 (26)
6 1waz_A MERF; protein structure 24.6 16 0.00066 13.6 0.5 25 110-134 5-31 (46)
7 2kih_A Matrix protein 2; S31N, 23.6 24 0.001 12.5 1.9 17 54-70 11-27 (43)
8 2l35_A DAP12-NKG2C_TM; immunor 22.6 25 0.001 12.3 1.4 41 24-71 11-51 (63)
9 2zy9_A Mg2+ transporter MGTE; 22.2 25 0.0011 12.3 7.4 159 230-406 283-448 (473)
10 3h9v_A P2X purinoceptor; purin 18.1 31 0.0013 11.7 1.2 11 497-507 156-166 (356)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3hqk_A
Probab=99.72 E-value=2.4e-13 Score=103.01 Aligned_cols=354 Identities=13% Similarity=0.106 Sum_probs=187.7
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98762244320420599989732304573676678999997147777777789934620488898999999999999988
Q gi|254780832|r 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKYILL 80 (628)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~alGvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~liv~vKYv~~ 80 (628)
|+++.++++-+. +.+..-.+|.+ ||+. ++.........++ .-+++.+-..+. .+....-|..+
T Consensus 1 m~~~~~~~klg~---~~~~~l~~g~~---iGsG-if~~~~~~~~~g~--------~~~~~~li~~l~--~~~~~~~~~el 63 (445)
T 3l1l_A 1 MSSDADAHKVGL---IPVTLMVSGAI---MGSG-VFLLPANLASTGG--------IAIYGWLVTIIG--ALGLSMVYAKM 63 (445)
T ss_dssp ------CCCBCH---HHHHHHHHHHH---CSSH-HHHHHHHHHHHCT--------HHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CCCCCCCCCCCH---HHHHHHHHHHH---HHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 999877898189---99999999999---9999-9999999999999--------999999999999--99999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C-HHHHHHHH
Q ss_conf 741078998138999999987267554257789999999996500346999999987246642736676-1-28999999
Q gi|254780832|r 81 LLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN-F-IILIALGI 158 (628)
Q Consensus 81 ~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~l~~-~-~v~iai~i 158 (628)
..+- ..+||. |+-.+|..++ ..|.+.+-....+++.+.+.+...+.+.+....|...+ + .....+++
T Consensus 64 ~~~~--p~~Gg~---y~~~~~~~g~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (445)
T 3l1l_A 64 SFLD--PSPGGS---YAYARRCFGP------FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVV 132 (445)
T ss_dssp HHHC--CCTTTH---HHHHHHHSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHH
T ss_pred HHHC--CCCCCH---HHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9976--999829---9999999684------8999999999999999998876777520011376567833789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999750001899999845999999999999999865018-74444679689999998374358999989999851087
Q gi|254780832|r 159 LVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDD-WGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAE 237 (628)
Q Consensus 159 l~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~-p~vl~a~~P~~~~~~~~~~~~~g~~~lg~v~La~TG~E 237 (628)
+.+...+|.+|.+.+++.....+.+-+..+..+++.+.... +.......+.... .+....+..+...+.|.+|.|
T Consensus 133 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~G~e 208 (445)
T 3l1l_A 133 LWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGL----GTFGAIQSTLNVTLWSFIGVE 208 (445)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC---------------HHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999861305566788999999988777520145552058866677787777----750159999999999998698
Q ss_pred HHHCCCCCCCCHHHH--HHHHHHHHHHHHHHHHH--HHHHHCCHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 874364546711699--99999999999999747--868735924-------5520368727863289999999999999
Q gi|254780832|r 238 ALYADLGHFGRKPIQ--YAWMVIFPALAINYLGQ--GALVLSNPE-------AIKDPFYMMFGGWFLPFAVLTATCATVI 306 (628)
Q Consensus 238 Al~advghF~~~~i~--~aw~~v~~~L~l~y~Gq--~a~ll~~~~-------~~~~~f~~~~p~~~~~~~v~~at~a~iI 306 (628)
+..+-.+..+.|..+ .+...........|..- ......+++ ...+.+....+++..+...+...++..-
T Consensus 209 ~~~~~~~e~k~p~~~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (445)
T 3l1l_A 209 SASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLG 288 (445)
T ss_dssp HHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTT
T ss_pred HHHCCHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 85031776317220231433322667889999999899715657775245680089998722430567778988876311
Q ss_pred HCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHH
Q ss_conf 6030100258999999975998865687038876571100689999999988877732------6888988789999999
Q gi|254780832|r 307 ASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGF------RHSESLVAAYGISVSG 380 (628)
Q Consensus 307 aSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f------~~s~~L~~aYgi~V~~ 380 (628)
...+...+.-++..+..++|.+|+ .+.++++ +..-.+.+ ++..+.+.++.+.+ ...+.+.....++...
T Consensus 289 ~~~~~~~~~sr~~~~~a~dg~lP~-~~~~~~k---~~~P~~ai-i~~~v~~~~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 363 (445)
T 3l1l_A 289 SLGGWTLLAGQTAKAAADDGLFPP-IFARVNK---AGTPVAGL-IIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLV 363 (445)
T ss_dssp THHHHHHHHHHHHHHHHHTTSSCG-GGGCCCT---TCCCHHHH-HHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCH-HHHCCCC---CCCCHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 055887885266799886497448-8716798---89916799-999999999999998512889999999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99998999999
Q gi|254780832|r 381 TMVISTIMFSV 391 (628)
Q Consensus 381 tf~lTt~l~~~ 391 (628)
.+++....+..
T Consensus 364 ~~~~~~~~~~~ 374 (445)
T 3l1l_A 364 PYLYTCAALLL 374 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.70 E-value=3.7e-11 Score=88.83 Aligned_cols=310 Identities=14% Similarity=0.078 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999988741078998138999999987267554257789999999996500346999999987246642736
Q gi|254780832|r 67 WVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPE 146 (628)
Q Consensus 67 Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~ 146 (628)
..+.+.+..-|..+..+-. .+||.. +-.++..+++ ..+...+-.....++...+.......+.+....+.
T Consensus 49 ~~~~~~~~l~~~el~~~~p--~~GG~y---~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (444)
T 3gia_A 49 GIYALLVAYSYTKLGAKIV--SNAGPI---AFIHKAIGDN-----IITGALSILLWMSYVISIALFAKGFAGYFLPLINA 118 (444)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CTTTHH---HHHHHHHCSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHH---HHHHHHHCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999647--997199---9999996818-----89999999999999888999999999986101468
Q ss_pred CC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-CCCCCCHHHHHHHHHHCCHHH
Q ss_conf 67-6-12899999999999750001899999845999999999999999865018-74-444679689999998374358
Q gi|254780832|r 147 LD-N-FIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDD-WG-ILAAFNPMYALHMVFGKGTIS 222 (628)
Q Consensus 147 l~-~-~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~-p~-vl~a~~P~~~~~~~~~~~~~g 222 (628)
.. . ....++++++.++..+|.+|++..++.....+.+.+..++...+.++... +. .....+|.-.. .-
T Consensus 119 ~~~~~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 190 (444)
T 3gia_A 119 PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVS--------GM 190 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHH--------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHH--------HH
T ss_conf 8641689999999999999999862579876679999987562367642342223665456677887378--------99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH-HHC-CHHH----HHHHH----HHHCCC
Q ss_conf 9999899998510878743645467116--9999999999999999747868-735-9245----52036----872786
Q gi|254780832|r 223 LVVLGSVFLTITGAEALYADLGHFGRKP--IQYAWMVIFPALAINYLGQGAL-VLS-NPEA----IKDPF----YMMFGG 290 (628)
Q Consensus 223 ~~~lg~v~La~TG~EAl~advghF~~~~--i~~aw~~v~~~L~l~y~Gq~a~-ll~-~~~~----~~~~f----~~~~p~ 290 (628)
+.+++..+.+.+|.|+..+..+..++|. +..+.........+.|..-... ... .++. .+++. ....++
T Consensus 191 ~~~~~~~~~~~~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 270 (444)
T 3gia_A 191 IFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGN 270 (444)
T ss_dssp HHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCC
T ss_conf 99999999996486323113211013200178899999999999889999999861440655326630245666664010
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32899999999999996030100258999999975998865687038876571100689999999988877732688898
Q gi|254780832|r 291 WFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESL 370 (628)
Q Consensus 291 ~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L 370 (628)
+..+.+.+.+.++.+-...+.+.+.-+++.++.++|.+|+.. ++. .+....+.+ ++..+.+++.. .+.+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f----~k~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l 343 (444)
T 3gia_A 271 LGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFF----ERK-VWFKSTEGL-YITSALGVLFA-LLFNMEGV 343 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSC----CTT-SCCSCTHHH-HHHHHHHHHHH-HHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----CCC-CCCCCCCHH-HHHHHHHHHHH-HHHHHHHH
T ss_conf 346767646877755789999887469999998749842987----205-899986199-99999999999-99869999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 87899999999999899999999983585699
Q gi|254780832|r 371 VAAYGISVSGTMVISTIMFSVFVHVCWKWKIS 402 (628)
Q Consensus 371 ~~aYgi~V~~tf~lTt~l~~~~~~~~~~~~~~ 402 (628)
...++.+..+.+++...-... .|++.+++.+
T Consensus 344 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~~ 374 (444)
T 3gia_A 344 ASITSAVFMVIYLFVILSHYI-LIDEVGGRKE 374 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCC
T ss_conf 999999999999999999999-9885277888
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=94.09 E-value=0.24 Score=25.42 Aligned_cols=43 Identities=9% Similarity=-0.138 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999975000189999984599999999999999986
Q gi|254780832|r 153 LIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIH 195 (628)
Q Consensus 153 ~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~ 195 (628)
...+++.++.+.++.+|.+........-....+..+..+.+..
T Consensus 144 ~~~~i~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~ 186 (501)
T 2jln_A 144 LWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLM 186 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 8999999999999999999999999998899999787656566
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=53.58 E-value=1.3 Score=20.56 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=6.6
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 18999987617776
Q gi|254780832|r 494 PDALLQNIKHNRIL 507 (628)
Q Consensus 494 P~~l~~~i~~n~~l 507 (628)
...+.+-+|.|+.-
T Consensus 57 ~~~~~~el~~n~sa 70 (269)
T 3hlz_A 57 KDAIRQELKENDSA 70 (269)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCC
T ss_conf 89999998508874
No 5
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=28.51 E-value=19 Score=13.03 Aligned_cols=16 Identities=25% Similarity=0.987 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3462048889899999
Q gi|254780832|r 55 RTEVIGLVSLMIWVLT 70 (628)
Q Consensus 55 ~~~v~G~lSli~Wtl~ 70 (628)
...|+|++-||.|-|-
T Consensus 8 aasiigilhlilwild 23 (26)
T 3bkd_A 8 AASIMGILHLILWILD 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999997
No 6
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=24.59 E-value=16 Score=13.62 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 77899999999965--00346999999
Q gi|254780832|r 110 LIALGLAGSALFIG--DSMVTPALSVL 134 (628)
Q Consensus 110 ~~~~gligaa~ll~--D~iLTpAISVl 134 (628)
.+.+|-+|-|++.| ||+|-||..+-
T Consensus 5 villG~vGlsal~GyLDyvLlPALa~F 31 (46)
T 1waz_A 5 VILLGVVGLSALTGYLDYVLLPALAIF 31 (46)
T ss_dssp HHHHHHHHHHHCCSCCCCCSCCHHHHH
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 620965239999999999999999999
No 7
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A*
Probab=23.57 E-value=24 Score=12.45 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 93462048889899999
Q gi|254780832|r 54 ERTEVIGLVSLMIWVLT 70 (628)
Q Consensus 54 ~~~~v~G~lSli~Wtl~ 70 (628)
...+|+|++-||.|-|-
T Consensus 11 ~aasiigilhlilwild 27 (43)
T 2kih_A 11 VAANIIGILHLILWILD 27 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 8
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=22.61 E-value=25 Score=12.33 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=25.7
Q ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 304573676678999997147777777789934620488898999999
Q gi|254780832|r 24 GVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTI 71 (628)
Q Consensus 24 GvV~GDIGTSPLY~~~~~~~~~~~~~~~~~~~~~v~G~lSli~Wtl~l 71 (628)
|+|-||.--.-+-++..-+.+..+ ..+++|++|.+.-+-.+
T Consensus 11 givlgdl~lt~lialavy~lgrlg-------TAevlgii~ivl~~~vl 51 (63)
T 2l35_A 11 GIVVGDLVLTVLIALAVYFLGRLG-------TAEVLGIISIVLVATVL 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSS-------SCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_conf 567877999999999999998302-------78898799999999999
No 9
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=22.22 E-value=25 Score=12.28 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=73.0
Q ss_pred HHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9985108---787436454671169999999999999999747868735-924552036872786328999999999999
Q gi|254780832|r 230 FLTITGA---EALYADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLS-NPEAIKDPFYMMFGGWFLPFAVLTATCATV 305 (628)
Q Consensus 230 ~La~TG~---EAl~advghF~~~~i~~aw~~v~~~L~l~y~Gq~a~ll~-~~~~~~~~f~~~~p~~~~~~~v~~at~a~i 305 (628)
+..+.|+ |-.|.+.+-+..-.-|.-|..+..+..+ . ++.++. ..+..++... +-.++-+.+....-
T Consensus 283 ~~~~~G~~~~~~~~~~~~~~~~~~~R~~WL~i~l~~~~---~-aa~vi~~fe~~l~~~v~------La~fmPiv~~mgGN 352 (473)
T 2zy9_A 283 IHKLGAVDVPDLVYSEAGPVALWLARVRWLVILILTGM---V-TSSILQGFESVLEAVTA------LAFYVPVLLGTGGN 352 (473)
T ss_dssp HHHHTTCCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHTHHHHHHCSH------HHHTHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHCCCCHHHH------HHHHHHHHHHHHHH
T ss_conf 88633777521222212077889999999999999999---9-99999987522103689------99870179885317
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 96030100258999999975998865687038876571100689999999988877732688898878999999999998
Q gi|254780832|r 306 IASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVIS 385 (628)
Q Consensus 306 IaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L~~aYgi~V~~tf~lT 385 (628)
.++|+. .++-+++++|-.-....... ..+.+.+..+|-+.+...+.+..++.+...++..-|++.++++++.
T Consensus 353 ~GtQs~-----tv~iR~la~g~i~~~~~~~~---~~kE~~vg~~~G~~~~~i~~~~~~~~~~~~l~~vi~~a~~~~~~~a 424 (473)
T 2zy9_A 353 TGNQSA-----TLIIRALATRDLDLRDWRRV---FLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFA 424 (473)
T ss_dssp HHHHHH-----HHHHHHHHTTSSCGGGHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 889999-----99999999715882139999---9999999999999999999999999335299999999999999999
Q ss_pred HH-HH--HHHHHHHCCCCHHHHHH
Q ss_conf 99-99--99999835856999999
Q gi|254780832|r 386 TI-MF--SVFVHVCWKWKISKVII 406 (628)
Q Consensus 386 t~-l~--~~~~~~~~~~~~~~~~~ 406 (628)
+. +. =..+++....|-....+
T Consensus 425 ~~~G~~iP~~l~kl~~DPA~as~p 448 (473)
T 2zy9_A 425 NLVGAMLPFLLRRLGVDPALVSNP 448 (473)
T ss_dssp HHHHTTHHHHHHHHTCCGGGSCHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999839992244506
No 10
>3h9v_A P2X purinoceptor; purinergic receptor, ION channel, closed state, APO state, ION transport, ionic channel, receptor, transmembrane, transport; HET: NAG; 3.10A {Danio rerio} PDB: 3i5d_A*
Probab=18.13 E-value=31 Score=11.72 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=3.6
Q ss_pred HHHHHHHCCCC
Q ss_conf 99987617776
Q gi|254780832|r 497 LLQNIKHNRIL 507 (628)
Q Consensus 497 l~~~i~~n~~l 507 (628)
++....++.++
T Consensus 156 ll~~aeNFTvl 166 (356)
T 3h9v_A 156 LLADAERFTVL 166 (356)
T ss_dssp TTGGGGGCEEE
T ss_pred HHHHCCCEEEE
T ss_conf 55403330799
Done!