Query gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 628 No_of_seqs 195 out of 803 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 10:30:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780832.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2bnma1 a.35.1.3 (A:6-76) Hydr 8.7 31 0.0022 10.2 -0.3 15 84-98 37-51 (71) 2 d1rzsa_ a.35.1.2 (A:) cro p22 8.6 35 0.0025 9.8 0.9 18 360-377 6-23 (61) 3 d2e74h1 f.23.27.1 (H:3-29) Pet 7.7 41 0.003 9.4 2.5 18 430-447 5-22 (27) 4 d1dx5i1 g.3.11.1 (I:345-387) T 7.6 41 0.003 9.3 0.5 31 525-555 9-39 (43) 5 d2guka1 d.360.1.1 (A:4-114) Hy 6.9 47 0.0034 9.0 1.0 53 496-550 9-67 (111) 6 d1vi7a1 d.14.1.11 (A:3-137) Hy 6.8 47 0.0035 9.0 -0.0 12 497-508 39-52 (135) 7 d1jqra_ d.218.1.2 (A:) DNA pol 6.7 49 0.0035 8.9 0.2 33 537-569 94-138 (174) 8 d2q66a1 a.160.1.1 (A:202-351) 6.4 51 0.0037 8.8 3.4 26 345-370 29-54 (150) 9 d1rutx2 g.39.1.3 (X:49-82) LIM 6.2 39 0.0028 9.5 -0.7 6 28-33 10-15 (34) 10 d2bm3a1 b.2.2.2 (A:5-166) Scaf 6.2 43 0.0031 9.2 -0.5 14 195-208 38-51 (162) No 1 >d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Probab=8.69 E-value=31 Score=10.20 Aligned_cols=15 Identities=53% Similarity=0.734 Sum_probs=10.2 Q ss_pred CCCCCCCHHHHHHHH Q ss_conf 078998138999999 Q gi|254780832|r 84 ADNDGEGGILSLLAL 98 (628) Q Consensus 84 adn~GEGGi~aL~sl 98 (628) |=.|||||-+.|.-| T Consensus 37 awengeggeltltql 51 (71) T d2bnma1 37 AWENGEGGELTLTQL 51 (71) T ss_dssp HHHTTTCTTCBHHHH T ss_pred HHHCCCCCEEEHHHH T ss_conf 863588750529998 No 2 >d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]} Probab=8.60 E-value=35 Score=9.82 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=11.4 Q ss_pred HHHHCCCHHHHHHHHHHH Q ss_conf 777326888988789999 Q gi|254780832|r 360 FVIGFRHSESLVAAYGIS 377 (628) Q Consensus 360 lvl~f~~s~~L~~aYgi~ 377 (628) ++-+||+.++++.+.||. T Consensus 6 vi~~FG~~~k~A~algis 23 (61) T d1rzsa_ 6 VIDHFGTQRAVAKALGIS 23 (61) T ss_dssp HHHHHSSHHHHHHHHTCC T ss_pred HHHHHCCHHHHHHHHCCC T ss_conf 999957799999996998 No 3 >d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Probab=7.67 E-value=41 Score=9.40 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=8.3 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 699999999999999998 Q gi|254780832|r 430 GYTPLLIASLCIIVMWTW 447 (628) Q Consensus 430 gW~~lli~~il~~iM~~W 447 (628) ||+.++....--.-|..| T Consensus 5 gwv~llvvftwsiamvvw 22 (27) T d2e74h1 5 GWVALLVVFTWSIAMVVW 22 (27) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHEEEEEEE T ss_conf 575888876322346887 No 4 >d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Probab=7.56 E-value=41 Score=9.35 Aligned_cols=31 Identities=6% Similarity=0.098 Sum_probs=24.2 Q ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCCCHH Q ss_conf 7551799997379979999994676678989 Q gi|254780832|r 525 PKEKRFVCEKISEHFSRVELFFGYMEEQNVS 555 (628) Q Consensus 525 ~~~eR~~v~~l~~g~~rv~~ryGf~e~p~i~ 555 (628) .....+.-+.++++-|||+-+-||+-.||-| T Consensus 9 ~~~CE~qCqP~~~~~Y~CiCaeGFaP~p~~P 39 (43) T d1dx5i1 9 RANCEYQCQPLDQTSYLCVCAEGFAPIPHEP 39 (43) T ss_dssp GCCCSSEEEECSSSCEEEECCTTEEEETTEE T ss_pred CCCCCEEEEECCCCCCEEEECCCCCCCCCCC T ss_conf 9974034151798752678126654589986 No 5 >d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]} Probab=6.90 E-value=47 Score=9.01 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=22.0 Q ss_pred HHHHHHHHCCCCCEEEEEEEEEECCCCCCC-----CCCEEEEEECC-CCEEEEEEEECCCC Q ss_conf 999987617776337999999863756367-----55179999737-99799999946766 Q gi|254780832|r 496 ALLQNIKHNRILHEQNIILTINTANQPRIP-----KEKRFVCEKIS-EHFSRVELFFGYME 550 (628) Q Consensus 496 ~l~~~i~~n~~lhe~~vfltV~~~~~P~V~-----~~eR~~v~~l~-~g~~rv~~ryGf~e 550 (628) .|.|++--.+-==+..+..|....+.|.+- .+-.|.+++++ ++ |+.+-||=.| T Consensus 9 vF~hhiYE~~KGvR~L~L~T~~~~~~~~~~~rL~~~~I~y~iq~v~~~~--kvNlFFG~~~ 67 (111) T d2guka1 9 VFMHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQIPYFAQPTPNTE--RTNLFFGCKE 67 (111) T ss_dssp HHHHHHHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTTCCEEEECCTTSS--EEEEEEECHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCC--EEEEEECCHH T ss_conf 9999999986617889998657867799999986189886987759997--3788758779 No 6 >d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=6.78 E-value=47 Score=8.97 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=4.4 Q ss_pred HHHHHH--HCCCCC Q ss_conf 999876--177763 Q gi|254780832|r 497 LLQNIK--HNRILH 508 (628) Q Consensus 497 l~~~i~--~n~~lh 508 (628) +++.++ |.++-| T Consensus 39 ~l~~lk~~~~~A~H 52 (135) T d1vi7a1 39 FVESVRAEHPDARH 52 (135) T ss_dssp HHHHHHHHCTTCSB T ss_pred HHHHHHHHCCCCCE T ss_conf 99999855889955 No 7 >d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]} Probab=6.69 E-value=49 Score=8.90 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=15.4 Q ss_pred CCEEEEEEEECCCC-----------CCCHHHHHHHHH-HCCCCCC Q ss_conf 99799999946766-----------789899999999-7389988 Q gi|254780832|r 537 EHFSRVELFFGYME-----------EQNVSQALAELR-NNGLKFE 569 (628) Q Consensus 537 ~g~~rv~~ryGf~e-----------~p~i~~~L~~~~-~~~i~~~ 569 (628) +...|+.+++==.| ..+-++.+|+.+ +.|..++ T Consensus 94 ~~~rrvDi~~~~~~~~~~aLl~~TGS~~fn~~lR~~A~~~G~~Ln 138 (174) T d1jqra_ 94 KKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLN 138 (174) T ss_dssp TEEEEEEEEEEETTHHHHHHHHHHCCHHHHHHHHHHHHTTTEEEE T ss_pred CCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEC T ss_conf 985788999769999999999974609999999999986035043 No 8 >d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=6.43 E-value=51 Score=8.76 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=16.8 Q ss_pred ECHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 00689999999988877732688898 Q gi|254780832|r 345 FLPSINLFLFVGVLLFVIGFRHSESL 370 (628) Q Consensus 345 Yip~In~ll~ia~i~lvl~f~~s~~L 370 (628) |-+||+|..++|-+.-..-..+.+.| T Consensus 29 ylGGI~waILvArvCql~p~a~~~~l 54 (150) T d2q66a1 29 FPGGVAWAMLVARICQLYPNACSAVI 54 (150) T ss_dssp SCCHHHHHHHHHHHHHHSTTCCHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 63789999999999986799988999 No 9 >d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.24 E-value=39 Score=9.53 Aligned_cols=6 Identities=100% Similarity=1.475 Sum_probs=0.0 Q ss_pred CCCCCC Q ss_conf 736766 Q gi|254780832|r 28 GDIGTS 33 (628) Q Consensus 28 GDIGTS 33 (628) ||||+| T Consensus 10 geiG~s 15 (34) T d1rutx2 10 GDIGTS 15 (34) T ss_dssp HHHCSE T ss_pred HHCCCH T ss_conf 220440 No 10 >d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]} Probab=6.19 E-value=43 Score=9.24 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=0.0 Q ss_pred HHHCCCCCCCCCCH Q ss_conf 65018744446796 Q gi|254780832|r 195 HISDDWGILAAFNP 208 (628) Q Consensus 195 ~i~~~p~vl~a~~P 208 (628) ||-.+|.+|+|+|| T Consensus 38 NIKYDP~vLQ~Vn~ 51 (162) T d2bm3a1 38 NIVYDPKVLMAVDP 51 (162) T ss_dssp EEECCTTTEEEECT T ss_pred EEEECHHHHCCCCC T ss_conf 62208799222346 Done!