RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
(628 letters)
>gnl|CDD|32972 COG3158, Kup, K+ transporter [Inorganic ion transport and
metabolism].
Length = 627
Score = 745 bits (1926), Expect = 0.0
Identities = 328/630 (52%), Positives = 435/630 (69%), Gaps = 5/630 (0%)
Query: 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60
M + + L +IGVVYGDIGTS LYA +EAL L V R EV+G
Sbjct: 1 MGSAEAMSTSFKKSTKALTLGAIGVVYGDIGTSPLYALREALS---GQGGLGVSRDEVLG 57
Query: 61 LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120
++SL+IW LT++VTIKY+L +LRADN+GEGGILSL+AL + P+R+ +LI LGL G+AL
Sbjct: 58 VLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAAL 117
Query: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180
F GD+++TPA+SVLSAVEG+ + P LD +++ I L ILVLLF++Q GT V F P+
Sbjct: 118 FYGDAVITPAISVLSAVEGLEIVTPALDPYVVPITLIILVLLFLIQRFGTGRVGKLFGPV 177
Query: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240
M+ W L + V GLI+I DD IL A NP YA+H + +G + VLG+VFL +TGAEALY
Sbjct: 178 MLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGAVFLAVTGAEALY 237
Query: 241 ADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLT 299
AD+GHFGRKPI+ AW V+ P L +NY GQGAL+LSNPEAI +PF+++ W L V+
Sbjct: 238 ADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVIL 297
Query: 300 ATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLL 359
AT ATVIASQAVI+G FSL RQAI LG+LPRM+I TSET GQ+++P++N L V V+
Sbjct: 298 ATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVF 357
Query: 360 FVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL 419
V+GF S +L AAYGI+V+GTMVI+TI+ +V + WKW+ V + L L+I++ F
Sbjct: 358 VVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFF 417
Query: 420 GANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSS-QQ 478
ANL K+ DGG+ PLL+A++ VMWTW+RG +L TR IP+ +FI S+E +
Sbjct: 418 AANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVR 477
Query: 479 VPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEH 538
VPGTA+FLT D VP ALL N+KHN++LHE+N+ LT+ T + P + R E++S+
Sbjct: 478 VPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSDD 537
Query: 539 FSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLF 598
F RV L FG+ME NV +AL R GLKF+IM TSF+L R L+ + +GMP W+D LF
Sbjct: 538 FVRVVLHFGFMETPNVPRALRLCRKKGLKFDIMETSFFLSRESLIASKNSGMPRWRDRLF 597
Query: 599 IMLSTYAEDPSDYFHLPANRVVEIVSHVNI 628
I L+ A P+DYF LP NRVVE+ + V I
Sbjct: 598 IALARNAASPTDYFKLPPNRVVELGTQVEI 627
>gnl|CDD|145714 pfam02705, K_trans, K+ potassium transporter. This is a family of
K+ potassium transporters that are conserved across
phyla, having both bacterial (KUP), yeast (HAK), and
plant (AtKT) sequences as members.
Length = 731
Score = 450 bits (1159), Expect = e-127
Identities = 193/579 (33%), Positives = 309/579 (53%), Gaps = 51/579 (8%)
Query: 18 LMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKY 77
L F+S+GVVYGDIGTS LY F T + + +++G++SL+ W LT++ KY
Sbjct: 2 LAFQSLGVVYGDIGTSPLYVFSS-----TFSGGISHSEDDILGVLSLIFWTLTLIPLFKY 56
Query: 78 ILLLLRADNDGEGGILSLLALL-------------------------------------- 99
+ ++LRAD++GEGG +L +LL
Sbjct: 57 VFIVLRADDNGEGGTFALYSLLCRHAKVRLIPNQQETDEELSTYALTTPPELNFAAGLKS 116
Query: 100 -LKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELD-NFIILIALG 157
L+K L+ L L G+++ IGD ++TPA+SVLSAV G+ +AP L N ++ ++
Sbjct: 117 KLEKHKFLKKALLILVLLGTSMVIGDGVLTPAISVLSAVSGLEIVAPSLSTNAVVPVSCV 176
Query: 158 ILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHI-SDDWGILAAFNPMYALHMVF 216
ILVLLF +Q GT V F+PI++ WLL I G+ +I D +L A +P YA+
Sbjct: 177 ILVLLFSIQHFGTDKVGFLFAPIVLLWLLSIAGIGIYNIVKFDPTVLKALSPYYAVQFFK 236
Query: 217 GKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLS 275
GT + LG + L+ITG EA++ADLGHF IQ A+ ++P L + Y+GQ A +
Sbjct: 237 ETGTDGWISLGGILLSITGVEAMFADLGHFSLLAIQLAFTFFVYPCLILAYMGQAAYLSK 296
Query: 276 NPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFF 335
+PEA +PFY W + AT A ++ASQA+I+GTFS+ QA+ LG PR+KI
Sbjct: 297 HPEAYANPFYRSIPDWLYWPVFIIATLAAIVASQAMISGTFSIISQAVALGCFPRVKIIH 356
Query: 336 TSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHV 395
TS+ F GQ+++P IN L +G + GFR + +L AYG++V+G M+++T + ++ + +
Sbjct: 357 TSKKFHGQIYIPEINWLLMIGCIAVTAGFRDTSNLGNAYGLAVTGVMLVTTCLMTLVMLL 416
Query: 396 CWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLS 455
W W I V++FL S+E+ + ANL K+L+GG+ PL+++ + ++VM W GT
Sbjct: 417 VWHWNIILVLLFLLIFGSVELLYFSANLIKILEGGWVPLVLSGIFMLVMSVWHYGTVRKY 476
Query: 456 TLTRHADIPIHSFIISIENSS-QQVPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIIL 514
+ + + +VPG + T +P + + +H + +
Sbjct: 477 EFEVEHRVSMSWLLALGPKLGLVRVPGIGLVYTELVSGIPAIFSHFVTNLPAIHSVVVFV 536
Query: 515 TINTANQPRIPKEKRFVCEKISE---HFSRVELFFGYME 550
+ + P +P E+RF+ ++ R +GY +
Sbjct: 537 CVKSVPVPTVPPEERFLVSRVGPKEFRMFRCVARYGYRD 575
>gnl|CDD|36043 KOG0825, KOG0825, KOG0825, PHD Zn-finger protein [General function
prediction only].
Length = 1134
Score = 34.0 bits (77), Expect = 0.13
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 491 QAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFFGYME 550
Q + LL+N K + L E+N LT PR + + ++I +HFS M
Sbjct: 337 QDSENNLLKNTKLEKSLEEKNESLT----EHPRSTELPKRHVQQIQKHFSEDN---NEMI 389
Query: 551 EQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIMLSTYAEDPSD 610
++ + ++ I + R + S MP+ S A++ +
Sbjct: 390 PMECDSFCSDQNESEVEPSINADRKQMNRNSVTHCSENNMPS---------SDLADEKVE 440
Query: 611 YFHLPA 616
P+
Sbjct: 441 TVSQPS 446
>gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 2. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown..
Length = 341
Score = 31.0 bits (70), Expect = 1.1
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 167 SHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVL 226
GT G A + W++ ++ + D I ++ MY + +G+ I++ +
Sbjct: 19 DDGTVGYANTTGGPVACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAI 78
Query: 227 GSVFLTITGA------EALYADLGHFGRKPIQ-------YAWMVIFPALAINYLGQG 270
+V L + E +Y LG R I + P A YL +G
Sbjct: 79 SAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEG 135
>gnl|CDD|36695 KOG1482, KOG1482, KOG1482, Zn2+ transporter [Inorganic ion
transport and metabolism].
Length = 379
Score = 30.7 bits (69), Expect = 1.3
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 35 LYAFKEALKTTTMNHTLLVERTEVIG-LVS-LMIWVLTIVVTIKYILLLLRADNDGEGGI 92
L++ + + T + R EV+G LVS L+IWV+T V+ + I LL D + GGI
Sbjct: 119 LFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGI 178
Query: 93 LSLLA 97
+ + A
Sbjct: 179 MLITA 183
>gnl|CDD|153334 cd07650, F-BAR_Syp1p_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Syp1p is
associated with septins, a family of GTP-binding
proteins that serve as elements of septin filaments,
which are required for cell morphogenesis and division.
Syp1p regulates cell-cycle dependent septin cytoskeletal
dynamics in yeast. It contains an N-terminal F-BAR
domain and a C-terminal domain of unknown function named
SAFF which is also present in FCH domain Only (FCHO)
proteins and endophilin interacting protein 1. F-BAR
domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 228
Score = 30.0 bits (68), Expect = 2.3
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 489 DSQAVPDA--LLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVE 543
DSQA P LLQ I R+ H ++++L T + E+ +
Sbjct: 156 DSQA-PFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTES-AEECMNQLLEFD 210
>gnl|CDD|37203 KOG1992, KOG1992, KOG1992, Nuclear export receptor CSE1/CAS
(importin beta superfamily) [Nuclear structure,
Intracellular trafficking, secretion, and vesicular
transport].
Length = 960
Score = 29.9 bits (67), Expect = 2.4
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 23/201 (11%)
Query: 5 TEDLQKNSPNP-----FYLMFESIGVVY---GDIGTSVLYAFKEALKTTTMNHTLLVERT 56
TE +++ S NP + +FESIG++ S + + +EAL L +
Sbjct: 595 TEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT-ILSEDIQ 653
Query: 57 EVIGLVSLMIWVL------TIVVTIKYILLLLRADN--DGEGGILSLLALLLKKIPKRST 108
E I V ++ VL TI + + L + N G I +L+ LL + S
Sbjct: 654 EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQ 713
Query: 109 VLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIAL-GILVLLFM-LQ 166
++ A L I ++ + + I + + + I LLF LQ
Sbjct: 714 IVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQ 773
Query: 167 SHGT----KGVACFFSPIMVA 183
+ T K FFS +
Sbjct: 774 NSKTEKFVKSFIVFFSLFTIK 794
>gnl|CDD|31790 COG1602, COG1602, Uncharacterized conserved protein [Function
unknown].
Length = 402
Score = 29.1 bits (65), Expect = 3.6
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 22/77 (28%)
Query: 515 TINTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTS 574
+ A P++P++ EK+ Y ++ +A+ EL G+ + +
Sbjct: 159 NLELAGNPKVPRK----VEKV------------YYDDLKAEEAVVELYRRGVDVYYIQRA 202
Query: 575 FYLG------RRKLVPT 585
+G RR+LVPT
Sbjct: 203 LSVGLLGLGKRRRLVPT 219
>gnl|CDD|36492 KOG1278, KOG1278, KOG1278, Endosomal membrane proteins, EMP70
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 628
Score = 29.0 bits (65), Expect = 3.6
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 283 PFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKG 342
FY MFG FL F +L TCA + +++ F L + + + F TS +
Sbjct: 515 QFYYMFGFLFLVFIILVVTCAEI----SIVLTYFQLCAEDYNW----WWRSFLTSGSSAV 566
Query: 343 QVFLPSINLFLFV 355
VF+ SI F
Sbjct: 567 YVFIYSIFYFFTK 579
>gnl|CDD|34396 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 28.8 bits (64), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 542 VELFFGYMEEQNVSQAL-AELRNNGLKFEIMN-TSFYLGRRKL 582
VE + G + E+ + + L A+ +N E + T FYLG+ L
Sbjct: 206 VEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248
>gnl|CDD|31233 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 28.3 bits (63), Expect = 6.8
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 152 ILIALGILVLLFMLQSHG-----TKGVACF--------FSPIMVAWLLMITVSGLIHISD 198
IL+ LG L L+F L S G G F I A LL+I + G I I
Sbjct: 239 ILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIIL-GAILI-- 295
Query: 199 DWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAE 237
+ AF P + V G I L ++G + L +G
Sbjct: 296 ---VAEAFVPGFG---VIGLLGIILFIIGLLLLFPSGTM 328
>gnl|CDD|144482 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 508
Score = 28.1 bits (63), Expect = 6.9
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 485 FLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEH 538
L + +PDA L +++ H + + N+ +PK K+ E+ E
Sbjct: 280 LLEKPTDVIPDASLAVAVSSKLRHVEENKNEVEHLNEEILPKIKK-AAEEDKEI 332
>gnl|CDD|176710 cd08362, BphC5-RrK37_N_like, N-terminal, non-catalytic, domain of
BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from
Rhodococcus rhodochrous K37, and similar proteins.
2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes
the extradiol ring cleavage reaction of
2,3-dihydroxybiphenyl, the third step in the
polychlorinated biphenyls (PCBs) degradation pathway
(bph pathway). The enzyme contains a N-terminal and a
C-terminal domain of similar structure fold, resulting
from an ancient gene duplication. BphC belongs to the
type I extradiol dioxygenase family, which requires a
metal in the active site for its catalytic activity.
Polychlorinated biphenyl degrading bacteria demonstrate
multiplicity of BphCs. Bacterium Rhodococcus rhodochrous
K37 has eight genes encoding BphC enzymes. This family
includes the N-terminal domain of BphC5-RrK37. The
crystal structure of the protein from Novosphingobium
aromaticivorans has a Mn(II)in the active site, although
most proteins of type I extradiol dioxygenases are
activated by Fe(II).
Length = 120
Score = 28.1 bits (63), Expect = 8.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 227 GSVFLTITGAEALYADLGHFGRKPIQY-AWMVI----FPALAINYLGQGALVLSNPEAIK 281
G V+L TG+E L R + ++ V ALA +G VLS P A
Sbjct: 35 GIVYLRATGSEHHILRLRRSDRNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATD 94
Query: 282 DP 283
DP
Sbjct: 95 DP 96
>gnl|CDD|35209 COG5650, COG5650, Predicted integral membrane protein [Function
unknown].
Length = 536
Score = 27.6 bits (61), Expect = 9.8
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 65 MIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGD 124
+ + + LL++ G G L L+ P + + A F+
Sbjct: 169 PFFKVLAFLLALIWLLVIYFIRKGLAGSRVLDVALVAASPLVGFAVFTVFDTIWAFFLAA 228
Query: 125 SMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAW 184
++V L+ V A + I+L L L + + +G + F + + W
Sbjct: 229 ALVCRGRPKLAGVLIGLSSAFKQIPLIVLPPL----LYLIYKEYGLRPAIKFIATAAITW 284
Query: 185 LL 186
LL
Sbjct: 285 LL 286
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,660,564
Number of extensions: 434590
Number of successful extensions: 1744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1714
Number of HSP's successfully gapped: 177
Length of query: 628
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 528
Effective length of database: 4,102,837
Effective search space: 2166297936
Effective search space used: 2166297936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)