RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] (628 letters) >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 31.8 bits (72), Expect = 0.27 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 13/64 (20%) Query: 566 LKFE--IMNTSFYLGRRKLVPTSRAGMPNWQDHLFIML-----STYAEDPSDYFHLPANR 618 +K+ +N + R++ + T A + +W ++ L +ED +++ R Sbjct: 17 VKYASPNLNMKY---RKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLL---ER 70 Query: 619 VVEI 622 EI Sbjct: 71 TREI 74 >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} (A:1-275) Length = 275 Score = 30.7 bits (68), Expect = 0.50 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 3/72 (4%) Query: 507 LHEQNIILTINTANQPRIPKEKRFVCEKISEH-FSRVELFFGYMEEQNVSQALAELRNNG 565 ++ ++ + S V+L + + +S+ L++ G Sbjct: 17 FANYIDRYAVDGYGPALSTIDQ--INAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAG 74 Query: 566 LKFEIMNTSFYL 577 LK + YL Sbjct: 75 LKAIGITPEIYL 86 >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (B:1-14,B:140-193) Length = 68 Score = 29.8 bits (67), Expect = 0.91 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 4/41 (9%) Query: 544 LFFGYMEEQNVSQALAELRNNGLKFEIMNTS---FYLGRRK 581 F + +++ + E +K E + T +Y + Sbjct: 29 YEFLKTTPEAMAKKVEEEGLEVIKPE-LGTKPRVYYKNLYR 68 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} (A:) Length = 285 Score = 28.3 bits (60), Expect = 2.9 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%) Query: 388 MFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL-GANLFKVLDGGYTP 433 + +++ + FL S + ++ G V+DGG +P Sbjct: 244 SNIPAGRMGTPEEVANLACFL---SSDKSGYINGRVF--VIDGGLSP 285 >2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} (A:) Length = 195 Score = 27.3 bits (60), Expect = 5.8 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%) Query: 517 NTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELR----NNGLKFE 569 + P P ++ E+ F GY +E + +LR ++ Sbjct: 113 FQGSPPA-PSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQ 168 >2ghs_A AGR_C_1268P; 15155668, calcium-binding protein, regucalcin, structural genomics, joint center for structural genomics, JCSG; 1.55A {Agrobacterium tumefaciens str} (A:) Length = 326 Score = 27.4 bits (58), Expect = 6.0 Identities = 1/27 (3%), Positives = 4/27 (14%), Gaps = 1/27 (3%) Query: 442 IVMWTWRRGTNLLSTLTRHADIPIHSF 468 + + G + Sbjct: 299 AITANPQHGL-TFELGIEVKGRFEPLY 324 >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} (A:186-280) Length = 95 Score = 26.7 bits (59), Expect = 8.5 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 12/67 (17%) Query: 506 ILHEQNIILT-INTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNN 564 + I LT I + + E F + F G+ E+QNV AL LR Sbjct: 30 TFALRGIDLTKIESRPSRKKAFEYLFYAD-----------FIGHREDQNVHNALENLREF 78 Query: 565 GLKFEIM 571 +++ Sbjct: 79 ATXVKVL 85 >1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} (A:) Length = 147 Score = 26.7 bits (59), Expect = 9.5 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%) Query: 590 MPNWQDHLFIMLSTYAEDPSDYFHLPANRVVEIVSH 625 + + + I L T D + F VV+ V + Sbjct: 88 RSSSRRDILISLRTSFADFATAFT----EVVDFVPY 119 >3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A (A:) Length = 285 Score = 26.5 bits (58), Expect = 9.8 Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 21/192 (10%) Query: 90 GGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN 149 +L ++A +I + +G + ++ + Sbjct: 92 STVLIVVAKASGRIT-WGQLAKNWLNVYFGNLVG---ALLFVLLMWLSGEYMTANGQWGL 147 Query: 150 FIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWG-ILAAFNP 208 ++ A + F + I+ ++ + V P Sbjct: 148 NVLQTADHKVHHTF---------IEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLP 198 Query: 209 MYAL------HMVFGKGTISLVVLGSVFLTITGAEALYADLGHFG-RKPIQYAWMVIFPA 261 + H + I + ++ F + A+ + +F + + + P Sbjct: 199 VAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPV 258 Query: 262 LAINYLGQGALV 273 N +G G LV Sbjct: 259 TIGNIIGGGLLV 270 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.141 0.422 Gapped Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 4,610,341 Number of extensions: 202335 Number of successful extensions: 607 Number of sequences better than 10.0: 1 Number of HSP's gapped: 604 Number of HSP's successfully gapped: 19 Length of query: 628 Length of database: 4,956,049 Length adjustment: 94 Effective length of query: 534 Effective length of database: 1,778,379 Effective search space: 949654386 Effective search space used: 949654386 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 57 (26.4 bits)