RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
         (628 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 31.8 bits (72), Expect = 0.27
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 566 LKFE--IMNTSFYLGRRKLVPTSRAGMPNWQDHLFIML-----STYAEDPSDYFHLPANR 618
           +K+    +N  +   R++ + T  A + +W ++    L        +ED +++      R
Sbjct: 17  VKYASPNLNMKY---RKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLL---ER 70

Query: 619 VVEI 622
             EI
Sbjct: 71  TREI 74


>3ktc_A Xylose isomerase; putative sugar isomerase, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
           (A:1-275)
          Length = 275

 Score = 30.7 bits (68), Expect = 0.50
 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 507 LHEQNIILTINTANQPRIPKEKRFVCEKISEH-FSRVELFFGYMEEQNVSQALAELRNNG 565
                    ++         ++  +         S V+L + +     +S+    L++ G
Sbjct: 17  FANYIDRYAVDGYGPALSTIDQ--INAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAG 74

Query: 566 LKFEIMNTSFYL 577
           LK   +    YL
Sbjct: 75  LKAIGITPEIYL 86


>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum
           binding enzyme, MGD-cofactors, DMSO-reductase family,
           4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
           acidigallici} (B:1-14,B:140-193)
          Length = 68

 Score = 29.8 bits (67), Expect = 0.91
 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 544 LFFGYMEEQNVSQALAELRNNGLKFEIMNTS---FYLGRRK 581
             F     + +++ + E     +K E + T    +Y    +
Sbjct: 29  YEFLKTTPEAMAKKVEEEGLEVIKPE-LGTKPRVYYKNLYR 68


>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase,
           FABG, short-chain alcohol reductase, fatty acid
           biosynthesis, apicoplast; 1.5A {Plasmodium falciparum}
           (A:)
          Length = 285

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 388 MFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL-GANLFKVLDGGYTP 433
                  +    +++ +  FL    S +  ++ G     V+DGG +P
Sbjct: 244 SNIPAGRMGTPEEVANLACFL---SSDKSGYINGRVF--VIDGGLSP 285


>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein
           structure initiative, PSI, center for eukaryotic
           structural genomics, CESG; NMR {Mus musculus} (A:)
          Length = 195

 Score = 27.3 bits (60), Expect = 5.8
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 517 NTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELR----NNGLKFE 569
              + P  P ++    E+          F GY +E +      +LR         ++
Sbjct: 113 FQGSPPA-PSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQ 168


>2ghs_A AGR_C_1268P; 15155668, calcium-binding protein, regucalcin,
           structural genomics, joint center for structural
           genomics, JCSG; 1.55A {Agrobacterium tumefaciens str}
           (A:)
          Length = 326

 Score = 27.4 bits (58), Expect = 6.0
 Identities = 1/27 (3%), Positives = 4/27 (14%), Gaps = 1/27 (3%)

Query: 442 IVMWTWRRGTNLLSTLTRHADIPIHSF 468
            +    + G                 +
Sbjct: 299 AITANPQHGL-TFELGIEVKGRFEPLY 324


>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT,
           structural genomics, PSI-2, protein structure
           initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
           (A:186-280)
          Length = 95

 Score = 26.7 bits (59), Expect = 8.5
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 506 ILHEQNIILT-INTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNN 564
               + I LT I +    +   E  F  +           F G+ E+QNV  AL  LR  
Sbjct: 30  TFALRGIDLTKIESRPSRKKAFEYLFYAD-----------FIGHREDQNVHNALENLREF 78

Query: 565 GLKFEIM 571
               +++
Sbjct: 79  ATXVKVL 85


>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer,
           clamp-loader, alpha-beta fold, gene regulation; HET:
           DNA; 2.10A {Escherichia coli} (A:)
          Length = 147

 Score = 26.7 bits (59), Expect = 9.5
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 590 MPNWQDHLFIMLSTYAEDPSDYFHLPANRVVEIVSH 625
             + +  + I L T   D +  F      VV+ V +
Sbjct: 88  RSSSRRDILISLRTSFADFATAFT----EVVDFVPY 119


>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel,
           cell inner membrane, cell membrane, membrane,
           transmembrane; HET: MA5; 2.24A {Escherichia coli O157}
           PDB: 3kcv_A (A:)
          Length = 285

 Score = 26.5 bits (58), Expect = 9.8
 Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 21/192 (10%)

Query: 90  GGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN 149
             +L ++A    +I     +            +G       + ++           +   
Sbjct: 92  STVLIVVAKASGRIT-WGQLAKNWLNVYFGNLVG---ALLFVLLMWLSGEYMTANGQWGL 147

Query: 150 FIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWG-ILAAFNP 208
            ++  A   +   F         +      I+   ++ + V                  P
Sbjct: 148 NVLQTADHKVHHTF---------IEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLP 198

Query: 209 MYAL------HMVFGKGTISLVVLGSVFLTITGAEALYADLGHFG-RKPIQYAWMVIFPA 261
           +         H +     I + ++   F +     A+ +   +F     + +    + P 
Sbjct: 199 VAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPV 258

Query: 262 LAINYLGQGALV 273
              N +G G LV
Sbjct: 259 TIGNIIGGGLLV 270


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,610,341
Number of extensions: 202335
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 19
Length of query: 628
Length of database: 4,956,049
Length adjustment: 94
Effective length of query: 534
Effective length of database: 1,778,379
Effective search space: 949654386
Effective search space used: 949654386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.4 bits)