RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
         (628 letters)



>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain
           {House fly (Musca domestica) [TaxId: 7370]}
          Length = 447

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 368 ESLVAAYGISVSGTMVISTIM----FSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANL 423
           +S V   G S +  +     +      V +H     ++  +I+ L  L     T    N+
Sbjct: 5   KSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERST--AENI 62

Query: 424 FKVLD 428
           +K L 
Sbjct: 63  YKKLK 67


>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
          Length = 385

 Score = 27.8 bits (60), Expect = 2.7
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 243 LGHFGRKPIQY--AWMVIFPALAINYLGQGALVLSNPEAIKD 282
           L    + P+    AW    P L +        ++ +PE ++ 
Sbjct: 13  LKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEG 54


>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 27.1 bits (60), Expect = 4.0
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 13/56 (23%)

Query: 286 MMFGGWFLPFAVLTATCATVIASQAVITGTF----SLARQAIHLGFLPRMKIFFTS 337
           +M+G        +TA     I SQ ++ GT+     +ARQ  H G      I  T+
Sbjct: 116 IMYGQ-------MTAGSWIYIGSQGIVQGTYETFAEVARQ--HFGGTLAGTITLTA 162


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
           [TaxId: 303]}
          Length = 554

 Score = 26.7 bits (59), Expect = 6.4
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 13/56 (23%)

Query: 286 MMFGGWFLPFAVLTATCATVIASQAVITGTF----SLARQAIHLGFLPRMKIFFTS 337
            M+G        +TA     I SQ ++ GT+       RQ  H G   + K   T+
Sbjct: 124 AMYGQ-------MTAGSWIYIGSQGIVQGTYETFVEAGRQ--HYGGSLKGKWVLTA 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,283,956
Number of extensions: 105239
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 22
Length of query: 628
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 537
Effective length of database: 1,158,166
Effective search space: 621935142
Effective search space used: 621935142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)