BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] (628 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 628 Score = 1276 bits (3303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 628/628 (100%), Positives = 628/628 (100%) Query: 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG Sbjct: 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60 Query: 61 LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120 LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL Sbjct: 61 LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120 Query: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI Sbjct: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180 Query: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY Sbjct: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240 Query: 241 ADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTA 300 ADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTA Sbjct: 241 ADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTA 300 Query: 301 TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF 360 TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF Sbjct: 301 TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF 360 Query: 361 VIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLG 420 VIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLG Sbjct: 361 VIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLG 420 Query: 421 ANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQQVP 480 ANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQQVP Sbjct: 421 ANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQQVP 480 Query: 481 GTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFS 540 GTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFS Sbjct: 481 GTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFS 540 Query: 541 RVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIM 600 RVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIM Sbjct: 541 RVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIM 600 Query: 601 LSTYAEDPSDYFHLPANRVVEIVSHVNI 628 LSTYAEDPSDYFHLPANRVVEIVSHVNI Sbjct: 601 LSTYAEDPSDYFHLPANRVVEIVSHVNI 628 >gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 544 Score = 28.5 bits (62), Expect = 0.35, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 219 GTISLVVLGSVFLTITGAEALYADLGHFGR 248 GT+S V G VF+T G EA D GH+ R Sbjct: 49 GTMSPVQHGEVFVTDDGGEADL-DFGHYER 77 >gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 317 Score = 26.9 bits (58), Expect = 0.93, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 506 ILHEQNIILTINTANQP-RIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNN 564 + ++ I ++++ NQ + P+ C+ I E+ F Y E+NV+ + RN Sbjct: 7 LTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNT 66 Query: 565 GLKFEIMNTSFYL 577 I TS YL Sbjct: 67 -----IKTTSDYL 74 >gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 118 SALFIGDSMVT-PALSVLSAVEGVRYIAPELDNFIILIALGI 158 S +F+ D T P +V + +EG R + E+ + ++ +LG+ Sbjct: 284 SKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGM 325 >gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 25.0 bits (53), Expect = 3.9, Method: Compositional matrix adjust. Identities = 8/32 (25%), Positives = 19/32 (59%) Query: 549 MEEQNVSQALAELRNNGLKFEIMNTSFYLGRR 580 ++E+ + + +AE+ N + FE+ T +G + Sbjct: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGDK 172 >gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 23.9 bits (50), Expect = 8.1, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 19/41 (46%) Query: 375 GISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIE 415 G+ S I F + V +KW + + + + P LS+E Sbjct: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.141 0.422 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 383,823 Number of Sequences: 1233 Number of extensions: 15693 Number of successful extensions: 42 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 9 length of query: 628 length of database: 328,796 effective HSP length: 80 effective length of query: 548 effective length of database: 230,156 effective search space: 126125488 effective search space used: 126125488 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 41 (20.4 bits)