BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
         (628 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 628

 Score = 1276 bits (3303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/628 (100%), Positives = 628/628 (100%)

Query: 1   MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60
           MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG
Sbjct: 1   MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60

Query: 61  LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120
           LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL
Sbjct: 61  LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120

Query: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180
           FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI
Sbjct: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180

Query: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240
           MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY
Sbjct: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240

Query: 241 ADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTA 300
           ADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTA
Sbjct: 241 ADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTA 300

Query: 301 TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF 360
           TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF
Sbjct: 301 TCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLF 360

Query: 361 VIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLG 420
           VIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLG
Sbjct: 361 VIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLG 420

Query: 421 ANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQQVP 480
           ANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQQVP
Sbjct: 421 ANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSSQQVP 480

Query: 481 GTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFS 540
           GTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFS
Sbjct: 481 GTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFS 540

Query: 541 RVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIM 600
           RVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIM
Sbjct: 541 RVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIM 600

Query: 601 LSTYAEDPSDYFHLPANRVVEIVSHVNI 628
           LSTYAEDPSDYFHLPANRVVEIVSHVNI
Sbjct: 601 LSTYAEDPSDYFHLPANRVVEIVSHVNI 628


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 28.5 bits (62), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 219 GTISLVVLGSVFLTITGAEALYADLGHFGR 248
           GT+S V  G VF+T  G EA   D GH+ R
Sbjct: 49  GTMSPVQHGEVFVTDDGGEADL-DFGHYER 77


>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 317

 Score = 26.9 bits (58), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 506 ILHEQNIILTINTANQP-RIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNN 564
           +  ++ I  ++++ NQ  + P+     C+ I E+      F  Y  E+NV+  +   RN 
Sbjct: 7   LTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNT 66

Query: 565 GLKFEIMNTSFYL 577
                I  TS YL
Sbjct: 67  -----IKTTSDYL 74


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 26.6 bits (57), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 118 SALFIGDSMVT-PALSVLSAVEGVRYIAPELDNFIILIALGI 158
           S +F+ D   T P  +V + +EG R +  E+ + ++  +LG+
Sbjct: 284 SKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGM 325


>gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62]
          Length = 473

 Score = 25.0 bits (53), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 549 MEEQNVSQALAELRNNGLKFEIMNTSFYLGRR 580
           ++E+ + + +AE+  N + FE+  T   +G +
Sbjct: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGDK 172


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 23.9 bits (50), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 375 GISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIE 415
           G+        S I F   + V +KW + +  + + P LS+E
Sbjct: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.141    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,823
Number of Sequences: 1233
Number of extensions: 15693
Number of successful extensions: 42
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 9
length of query: 628
length of database: 328,796
effective HSP length: 80
effective length of query: 548
effective length of database: 230,156
effective search space: 126125488
effective search space used: 126125488
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 41 (20.4 bits)