HHsearch alignment for GI: 254780833 and conserved domain: cd01454
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.50 E-value=2.5e-12 Score=92.79 Aligned_cols=152 Identities=18% Similarity=0.357 Sum_probs=105.4
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC--------EEECCCCCC-HHHH
Q ss_conf 0699852763115667872148989999987500233555531104798788636741--------781666558-7899
Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI--------VQTFPLAWG-VQHI 240 (371)
Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--------~~~~~lt~~-~~~~ 240 (371)
T Consensus 2 aV~lLlD~SgSM~~~-----~~i~~a~~a~~~l~~aL~~~-----g~~~~v~gF~s~~~~r~~~~~~~~k~f~e~~~~~~ 71 (174)
T cd01454 2 AVTLLLDLSGSMRSD-----RRIDVAKKAAVLLAEALEAC-----GVPHAILGFTTDAGGRERVRWIKIKDFDESLHERA 71 (174)
T ss_pred EEEEEEECCCCCCCC-----CHHHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHH
T ss_conf 899999898688998-----48999999999999999976-----99569995157889844347893236674211456
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC------CHHHHHHHHHHHHH
Q ss_conf 999740156887456423788999987421101234677766616999984045888888------97899999999997
Q gi|254780833|r 241 QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI------DNKESLFYCNEAKR 314 (371)
Q Consensus 241 ~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~------~~~~~~~~c~~~k~ 314 (371)
T Consensus 72 ~~~i~~l~~~g~Tr~G~Air~a~~~L~~-----------~~~~rkiliviSDG~P~D~~~~~~~~~~~~D~~~av~e~~~ 140 (174)
T cd01454 72 RKRLAALSPGGNTRDGAAIRHAAERLLA-----------RPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARK 140 (174)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8888511878989617999999999863-----------97666799998389976677788755389999999999998
Q ss_pred CCCEEEEEEECCCCC---HHHHHHHCCCCEE
Q ss_conf 898799999418642---7989983389808
Q gi|254780833|r 315 RGAIVYAIGVQAEAA---DQFLKNCASPDRF 342 (371)
Q Consensus 315 ~gi~i~tIg~~~~~~---~~~l~~cAs~~~~ 342 (371)
T Consensus 141 ~GI~~~~i~i~~~~~~~~~~~l~~i~g~~~~ 171 (174)
T cd01454 141 LGIEVFGITIDRDATTVDKEYLKNIFGEEGY 171 (174)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHCCCCCE
T ss_conf 7988999998985556699999984287877