HHsearch alignment for GI: 254780833 and conserved domain: cd01456
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.88 E-value=3.1e-21 Score=146.54 Aligned_cols=171 Identities=19% Similarity=0.182 Sum_probs=125.1
Q ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC--------
Q ss_conf 100013467406998527631156678721489899999875002335555311047987886367417816--------
Q gi|254780833|r 160 KISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF-------- 231 (371)
Q Consensus 160 ~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-------- 231 (371)
T Consensus 12 p~~~~~~~P~~~~lVlD~SGSM~~~~~~g~~rl~~ak~a~~~~v~~l~~~------drvgLv~F~~~~~~~~d~~~~~~~ 85 (206)
T cd01456 12 PVETEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDG------TRLGLWTFSGDGDNPLDVRVLVPK 85 (206)
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCCCCCCCCEECCC
T ss_conf 97568989873899997987877878776459999999999999857999------879999977867778885132145
Q ss_pred -CC--------CCCHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf -66--------558789999974015-68874564237889999874211012346777666169999840458888889
Q gi|254780833|r 232 -PL--------AWGVQHIQEKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID 301 (371)
Q Consensus 232 -~l--------t~~~~~~~~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~ 301 (371)
T Consensus 86 ~~~~~~~~~~~~~~r~~l~~~i~~l~~~~G~T~l~~al~~a~~~~~-------------~~~~~~IvLlTDG~~~~g~~~ 152 (206)
T cd01456 86 GCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-------------PGRVNVVVLITDGEDTCGPDP 152 (206)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-------------CCCCCEEEEEECCCCCCCCCH
T ss_conf 6544434552377899999999745778896479999999998627-------------787647999923764468885
Q ss_pred HHHHHHHHHH-HHHCCCEEEEEEECCCCCHHHHHHHC--CCCEE-EEECCHH
Q ss_conf 7899999999-99789879999941864279899833--89808-9828989
Q gi|254780833|r 302 NKESLFYCNE-AKRRGAIVYAIGVQAEAADQFLKNCA--SPDRF-YSVQNSR 349 (371)
Q Consensus 302 ~~~~~~~c~~-~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~-y~~~~~~ 349 (371)
T Consensus 153 ~~~~~~l~~~~~~~~~v~V~tig~G~d~d~~~L~~IA~~tgG~y~y~~~d~~ 204 (206)
T cd01456 153 CEVARELAKRRTPAPPIKVNVIDFGGDADRAELEAIAEATGGTYAYNQSDLA 204 (206)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999983177999589999718865899999999742978995167602