HHsearch alignment for GI: 254780833 and conserved domain: cd01459
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=96.97 E-value=0.024 Score=32.48 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCCCCCCC---------CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCC----
Q ss_conf 740699852763115667---------8721489899999875002335555311047987886367-41781666----
Q gi|254780833|r 168 GLDMMMVLDVSLSMNDHF---------GPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPL---- 233 (371)
Q Consensus 168 ~idi~~viD~SgSm~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~l---- 233 (371)
T Consensus 31 einlivaIDFT~SNg~p~~~~SLHy~~~~~~N~Y~~aI~~vg~iL~~YD~Dk~~p~y-GFGa~~~~~~~~~~~~~~~~~~ 109 (254)
T cd01459 31 ESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAF-GFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCCEEECCCCCCCCC
T ss_conf 885899997078689989998854589999899999999999998632778811301-1231139997573577799999
Q ss_pred --CCC----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf --558----78999997401568874564237889999874211012346777666169999840458888889789999
Q gi|254780833|r 234 --AWG----VQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLF 307 (371)
Q Consensus 234 --t~~----~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~ 307 (371)
T Consensus 110 p~~~G~~gvl~aY~~~l~~v~lsGPT~FapiI~~a~~~a~~~~~---------~~~Y~ILlIiTDG~i~D----~~~Ti~ 176 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNS---------QSKYHILLIITDGEITD----MNETIK 176 (254)
T ss_pred CCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHCC---------CCEEEEEEEECCCCCCC----HHHHHH
T ss_conf 96559999999999860743764886059999999999997324---------87089999980796367----899999
Q ss_pred HHHHHHHCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 99999978987999994186427989983
Q gi|254780833|r 308 YCNEAKRRGAIVYAIGVQAEAADQFLKNC 336 (371)
Q Consensus 308 ~c~~~k~~gi~i~tIg~~~~~~~~~l~~c 336 (371)
T Consensus 177 aIv~AS~~PlSIIiVGVGd-~dF~~M~~l 204 (254)
T cd01459 177 AIVEASKYPLSIVIVGVGD-GPFDAMERL 204 (254)
T ss_pred HHHHHCCCCEEEEEEEECC-CCHHHHHHH
T ss_conf 9999717981799997368-882778873