HHsearch alignment for GI: 254780833 and conserved domain: cd01461
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.91 E-value=7.2e-23 Score=156.42 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=130.7
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CC---HHHHH
Q ss_conf 67406998527631156678721489899999875002335555311047987886367417816665--58---78999
Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WG---VQHIQ 241 (371)
Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~---~~~~~ 241 (371)
T Consensus 1 ~P~div~viD~SgSM~g------~~l~~ak~a~~~~l~~l~~~------d~~~iv~F~~~~~~~~~~~~~~~~~~~~~a~ 68 (171)
T cd01461 1 LPKEVVFVIDTSGSMSG------TKIEQTKEALLTALKDLPPG------DYFNIIGFSDTVEEFSPSSVSATAENVAAAI 68 (171)
T ss_pred CCCEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHCCCC------CEEEEEEECCEEEEECCCCEECCHHHHHHHH
T ss_conf 98469999917988986------39999999999999829987------8799999878065980775307999999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 99740156887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r 242 EKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA 321 (371)
Q Consensus 242 ~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t 321 (371)
T Consensus 69 ~~i~~l~~~G~T~i~~aL~~a~~~l~~~-----------~~~~~~iillTDG~~~~~----~~~~~~~~~~~~~~i~i~t 133 (171)
T cd01461 69 EYVNRLQALGGTNMNDALEAALELLNSS-----------PGSVPQIILLTDGEVTNE----SQILKNVREALSGRIRLFT 133 (171)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHC-----------CCCCCEEEEECCCCCCCH----HHHHHHHHHHHCCCCEEEE
T ss_conf 8875478899866999999999988635-----------798618999757886886----8999999997448963999
Q ss_pred EEECCCCCHHHHHHHC--CCCEEEEECCHHHHHHHH
Q ss_conf 9941864279899833--898089828989999999
Q gi|254780833|r 322 IGVQAEAADQFLKNCA--SPDRFYSVQNSRKLHDAF 355 (371)
Q Consensus 322 Ig~~~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af 355 (371)
T Consensus 134 ig~G~~~~~~~L~~iA~~~~G~~~~v~~~~~l~~~~ 169 (171)
T cd01461 134 FGIGSDVNTYLLERLAREGRGIARRIYETDDIESQL 169 (171)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 997897999999999972898899889878999976