HHsearch alignment for GI: 254780833 and conserved domain: cd01463
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.87 E-value=9.1e-21 Score=143.73 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=127.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCC---------CC
Q ss_conf 346740699852763115667872148989999987500233555531104798788636741781666---------55
Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPL---------AW 235 (371)
Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l---------t~ 235 (371)
T Consensus 10 ~~~Pkdvv~vlD~SGSM~g------~kl~~ak~a~~~il~~L~~~D------~~~iv~Fs~~~~~~~p~~~~~~~~~t~~ 77 (190)
T cd01463 10 ATSPKDIVILLDVSGSMTG------QRLHLAKQTVSSILDTLSDND------FFNIITFSNEVNPVVPCFNDTLVQATTS 77 (190)
T ss_pred CCCCCEEEEEEECCCCCCC------CHHHHHHHHHHHHHHHCCCCC------EEEEEEECCCCEEEECCCCCCEEECCHH
T ss_conf 7898269999979998897------349999999999998199877------9999996897536302456843368999
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 878999997401568874564237889999874211012346777666169999840458888889789999999999--
Q gi|254780833|r 236 GVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAK-- 313 (371)
Q Consensus 236 ~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k-- 313 (371)
T Consensus 78 n~~~~~~~i~~l~~~G~Tn~~~al~~A~~~l~~~~~~~~--~~~~~~~~~~IillTDG~~~~~----~~i~~~~~~~~~~ 151 (190)
T cd01463 78 NKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNH--SGSRSQCNQAIMLITDGVPENY----KEIFDKYNWDKNS 151 (190)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHHHCC
T ss_conf 999999999828579872489999999999987420155--6655555515999836988757----8899999997557
Q ss_pred HCCCEEEEEEECCC-CCHHHHHHHC--CCCEEEEECCH
Q ss_conf 78987999994186-4279899833--89808982898
Q gi|254780833|r 314 RRGAIVYAIGVQAE-AADQFLKNCA--SPDRFYSVQNS 348 (371)
Q Consensus 314 ~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~~~~ 348 (371)
T Consensus 152 ~~~i~ift~G~G~~~~d~~~L~~iA~~~~G~y~~I~~~ 189 (190)
T cd01463 152 EIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 99879999996799778799999998099569978889