HHsearch alignment for GI: 254780833 and conserved domain: cd01465
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.95 E-value=1.3e-26 Score=178.94 Aligned_cols=166 Identities=19% Similarity=0.299 Sum_probs=143.8
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHHHHHC
Q ss_conf 406998527631156678721489899999875002335555311047987886367417816665--587899999740
Q gi|254780833|r 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQEKINR 246 (371)
Q Consensus 169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~~i~~ 246 (371)
T Consensus 1 ldiv~vlD~SGSM~g------~~~~~~k~a~~~~l~~l~~~------dr~~iv~F~~~~~~~~~~~~~~~~~~~~~~i~~ 68 (170)
T cd01465 1 LNLVFVIDRSGSMDG------PKLPLVKSALKLLVDQLRPD------DRLAIVTYDGAAETVLPATPVRDKAAILAAIDR 68 (170)
T ss_pred CCEEEEEECCCCCCC------CHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEECCCCCCHHHHHHHHHHHHC
T ss_conf 919999908868897------19999999999999858987------879999835861551587866679999998743
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 15688745642378899998742110123467776661699998404588888897899999999997898799999418
Q gi|254780833|r 247 LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326 (371)
Q Consensus 247 l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~ 326 (371)
T Consensus 69 l~~~G~T~~~~~l~~a~~~~~~~~---------~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~i~i~tiGiG~ 139 (170)
T cd01465 69 LTAGGSTAGGAGIQLGYQEAQKHF---------VPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD 139 (170)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 898998527799999999998633---------78875069998158856798898999999999874388624898088
Q ss_pred CCCHHHHHHHC--CCCEEEEECCHHHHHHHH
Q ss_conf 64279899833--898089828989999999
Q gi|254780833|r 327 EAADQFLKNCA--SPDRFYSVQNSRKLHDAF 355 (371)
Q Consensus 327 ~~~~~~l~~cA--s~~~~y~~~~~~~L~~af 355 (371)
T Consensus 140 ~~~~~~L~~iA~~~~G~~~~v~~~~~l~~~f 170 (170)
T cd01465 140 NYNEDLMEAIADAGNGNTAYIDNLAEARKVF 170 (170)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCHHHHHHHC
T ss_conf 7999999999975798899849999999639