HHsearch alignment for GI: 254780833 and conserved domain: cd01466
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.90 E-value=1.2e-22 Score=155.15 Aligned_cols=149 Identities=26% Similarity=0.331 Sum_probs=122.7
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHHHHHHH
Q ss_conf 4069985276311566787214898999998750023355553110479878863674178166655----878999997
Q gi|254780833|r 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQHIQEKI 244 (371)
Q Consensus 169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~~~~~i 244 (371)
T Consensus 1 ~div~vlD~SGSM~g------~~l~~~k~a~~~~~~~L~~~------d~v~iV~F~~~a~~~~pl~~~~~~~~~~~~~~i 68 (155)
T cd01466 1 VDLVAVLDVSGSMAG------DKLQLVKHALRFVISSLGDA------DRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVV 68 (155)
T ss_pred CEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEEEECCEECCHHHHHHHHHHH
T ss_conf 939999908989887------38999999999999848976------748999956874262046037999999999987
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 40156887456423788999987421101234677766616999984045888888978999999999978987999994
Q gi|254780833|r 245 NRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV 324 (371)
Q Consensus 245 ~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~ 324 (371)
T Consensus 69 ~~l~~~GgT~i~~gl~~a~~~l~~~~---------~~~~~~~IiLlTDG~~n~~--------~~~~~~~~~~i~i~tiGi 131 (155)
T cd01466 69 DGLQAGGGTNVVGGLKKALKVLGDRR---------QKNPVASIMLLSDGQDNHG--------AVVLRADNAPIPIHTFGL 131 (155)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCEEEEEECCCCCCHH--------HHHHHHHCCCCEEEEEEE
T ss_conf 53776888726799999999998436---------6898308999826986405--------778998717973999997
Q ss_pred CCCCCHHHHHHHC--CCCEEEEEC
Q ss_conf 1864279899833--898089828
Q gi|254780833|r 325 QAEAADQFLKNCA--SPDRFYSVQ 346 (371)
Q Consensus 325 ~~~~~~~~l~~cA--s~~~~y~~~ 346 (371)
T Consensus 132 G~~~d~~lL~~iA~~~gG~~~~v~ 155 (155)
T cd01466 132 GASHDPALLAFIAEITGGTFSYVK 155 (155)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 886789999999976997799949