HHsearch alignment for GI: 254780833 and conserved domain: cd01475

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.87  E-value=5e-20  Score=139.25  Aligned_cols=178  Identities=22%  Similarity=0.388  Sum_probs=140.2

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHHHH
Q ss_conf             67406998527631156678721489899999875002335555311047987886367417816665--5878999997
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQEKI  244 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~~i  244 (371)
T Consensus         1 gplDlvFllD~S~Svg~------~nF~~~k~Fv~~lv~~f~I---~~~~trVgvv~ys~~~~~~f~l~~~~~k~~l~~aI   71 (224)
T cd01475           1 GPTDLVFLIDSSRSVRP------ENFELVKQFLNQIIDSLDV---GPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAV   71 (224)
T ss_pred             CCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHH
T ss_conf             97439999948899898------9999999999999985687---99852999999658278999668867889999999


Q ss_pred             HCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             40156-88745642378899998742110123467776661699998404588888897899999999997898799999
Q gi|254780833|r  245 NRLIF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG  323 (371)
Q Consensus       245 ~~l~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg  323 (371)
T Consensus        72 ~~i~~~gggT~Tg~AL~~~~~~~f~~~~G~R---p~~~~vpkvlIviTDG~s~D~------v~~~A~~lr~~GV~ifaVG  142 (224)
T cd01475          72 RRMEYLETGTMTGLAIQYAMNNAFSEAEGAR---PGSERVPRVGIVVTDGRPQDD------VSEVAAKARALGIEMFAVG  142 (224)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCCEEEEEECCCCCCCC------HHHHHHHHHHCCCEEEEEE
T ss_conf             8636138844699999999997277023998---755689859999717987663------8999999998798899996


Q ss_pred             ECCCCCHHHHHHHCC-C--CEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             418642798998338-9--808982898999999999999640
Q gi|254780833|r  324 VQAEAADQFLKNCAS-P--DRFYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       324 ~~~~~~~~~l~~cAs-~--~~~y~~~~~~~L~~af~~I~~~i~  363 (371)
T Consensus       143 Vg-~~~~~eL~~IAs~P~~~hvf~v~~F~~l~~l~~~l~~~iC  184 (224)
T cd01475         143 VG-RADEEELREIASEPLADHVFYVEDFSTIEELTKKFQGKIC  184 (224)
T ss_pred             CC-CCCHHHHHHHHCCCCHHCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             37-4798999998559737568994798899999999876118