HHsearch alignment for GI: 254780833 and conserved domain: cd01480
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.86 E-value=8.6e-20 Score=137.85 Aligned_cols=171 Identities=19% Similarity=0.263 Sum_probs=130.9
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCCCEEEEEEEEEECCCCEEECCCC---CCHHHH
Q ss_conf 6740699852763115667872148989999987500233555---5311047987886367417816665---587899
Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSI---PDVNNVVRSGLVTFSSKIVQTFPLA---WGVQHI 240 (371)
Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~lt---~~~~~~ 240 (371)
T Consensus 1 gpvDlvFllD~S~Sv~~------~~F~~~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~~~~~~~~~~~~~l 74 (186)
T cd01480 1 GPVDITFVLDSSESVGL------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSL 74 (186)
T ss_pred CCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHH
T ss_conf 97469999968898787------899999999999999985301345687743898998558427986047775889999
Q ss_pred HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99974015-68874564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r 241 QEKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319 (371)
Q Consensus 241 ~~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i 319 (371)
T Consensus 75 ~~~I~~i~y~gG~T~tg~AL~~a~~~~~~~---------~r~~~~kvlvliTDG~S~~~~~--~~~~~aa~~lr~~GV~i 143 (186)
T cd01480 75 KEAVDNLEYIGGGTFTDCALKYATEQLLEG---------SHQKENKFLLVITDGHSDGSPD--GGIEKAVNEADHLGIKI 143 (186)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHC---------CCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHCCCEE
T ss_conf 999975013589862999999999998613---------6789853899984587666740--66999999999879899
Q ss_pred EEEEECCCCCHHHHHHHCC-CCEEEEECCHHHHHHHH
Q ss_conf 9999418642798998338-98089828989999999
Q gi|254780833|r 320 YAIGVQAEAADQFLKNCAS-PDRFYSVQNSRKLHDAF 355 (371)
Q Consensus 320 ~tIg~~~~~~~~~l~~cAs-~~~~y~~~~~~~L~~af 355 (371)
T Consensus 144 faVGVG~~-~~~eL~~IAs~p~~~~~~~~f~~L~~~~ 179 (186)
T cd01480 144 FFVAVGSQ-NEEPLSRIACDGKSALYRENFAELLWSF 179 (186)
T ss_pred EEEEECCC-CHHHHHHHHCCCCCEEEECCHHHHHCCH
T ss_conf 99994748-8799999858997389736899870111