>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

Probab=99.73 E-value=4.2e-16 Score=115.56 Aligned_cols=158 Identities=18% Similarity=0.296 Sum_probs=121.6 Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHCC Q ss_conf 069985276311566787214898999998750023355553110479878863674178166655--878999997401 Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINRL 247 (371) Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~l 247 (371) T Consensus 2 DlvFllD~S~si~~------~~F~~~k~Fv~~lv~~f~i~---~~~trVgvi~ys~~~~~~f~l~~~~~~~~l~~~I~~i 72 (165) T cd01481 2 DIVFLIDGSDNVGS------GNFPAIRDFIERIVQSLDVG---PDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRL 72 (165) T ss_pred CEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHH T ss_conf 78999968899898------99999999999999960468---8862788999868647999767768999999999841 Q ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC Q ss_conf 56887--4564237889999874211012346777666169999840458888889789999999999789879999941 Q gi|254780833|r 248 IFGST--TKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ 325 (371) Q Consensus 248 ~~~g~--T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~ 325 (371) T Consensus 73 ~~~~g~~t~tg~AL~~a~~~~f~~~----~g~R~r~~v~kvlvviTdG~s~d------~~~~~a~~lr~~gV~i~aVGvg 142 (165) T cd01481 73 RLRGGSQLNTGSALDYVVKNLFTKS----AGSRIEEGVPQFLVLITGGKSQD------DVERPAVALKRAGIVPFAIGAR 142 (165) T ss_pred HCCCCCCEEHHHHHHHHHHHHCCCC----CCCCCCCCCCEEEEEEECCCCCC------HHHHHHHHHHHCCCEEEEEECC T ss_conf 0458984369999999999716756----78875579986999984898853------7899999999889789999689 Q ss_pred CCCCHHHHHHHCC-CCEEEEECC Q ss_conf 8642798998338-980898289 Q gi|254780833|r 326 AEAADQFLKNCAS-PDRFYSVQN 347 (371) Q Consensus 326 ~~~~~~~l~~cAs-~~~~y~~~~ 347 (371) T Consensus 143 -~~~~~eL~~IAs~p~~vf~~~~ 164 (165) T cd01481 143 -NADLAELQQIAFDPSFVFQVSD 164 (165) T ss_pred -CCCHHHHHHHHCCCCCEEECCC T ss_conf -7999999998589877697389

HHsearch alignment for GI: 254780833 and conserved domain: cd01481