Query         gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 371
No_of_seqs    156 out of 2153
Neff          10.1
Searched_HMMs 39220
Date          Sun May 29 23:34:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780833.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK13685 hypothetical protein; 100.0 6.4E-27 1.6E-31  180.9  21.1  191  168-368    88-296 (326)
  2 cd01465 vWA_subgroup VWA subgr 100.0 1.3E-26 3.4E-31  178.9  18.0  166  169-355     1-170 (170)
  3 cd01467 vWA_BatA_type VWA BatA  99.9   1E-25 2.7E-30  173.6  17.5  163  168-351     2-180 (180)
  4 cd01461 vWA_interalpha_trypsin  99.9 7.2E-23 1.8E-27  156.4  17.7  162  167-355     1-169 (171)
  5 cd01466 vWA_C3HC4_type VWA C3H  99.9 1.2E-22   3E-27  155.2  15.7  149  169-346     1-155 (155)
  6 cd01456 vWA_ywmD_type VWA ywmD  99.9 3.1E-21 7.9E-26  146.5  14.9  171  160-349    12-204 (206)
  7 cd01463 vWA_VGCC_like VWA Volt  99.9 9.1E-21 2.3E-25  143.7  16.0  166  165-348    10-189 (190)
  8 cd01470 vWA_complement_factors  99.9 2.4E-20 6.1E-25  141.2  17.6  176  169-356     1-198 (198)
  9 cd01475 vWA_Matrilin VWA_Matri  99.9   5E-20 1.3E-24  139.3  18.4  178  167-363     1-184 (224)
 10 cd01480 vWA_collagen_alpha_1-V  99.9 8.6E-20 2.2E-24  137.8  17.7  171  167-355     1-179 (186)
 11 cd01464 vWA_subfamily VWA subf  99.9   3E-20 7.6E-25  140.6  15.2  173  168-356     3-175 (176)
 12 cd01474 vWA_ATR ATR (Anthrax T  99.9   2E-19   5E-24  135.7  18.2  179  165-365     1-184 (185)
 13 cd01451 vWA_Magnesium_chelatas  99.8 1.5E-18 3.8E-23  130.3  17.6  165  171-354     3-175 (178)
 14 pfam00092 VWA von Willebrand f  99.8 2.5E-17 6.3E-22  123.0  18.4  169  170-358     1-177 (177)
 15 smart00327 VWA von Willebrand   99.8 3.6E-17 9.1E-22  122.0  18.5  158  168-344     1-164 (177)
 16 cd01469 vWA_integrins_alpha_su  99.8 1.7E-17 4.2E-22  124.0  16.0  166  169-353     1-176 (177)
 17 cd01450 vWFA_subfamily_ECM Von  99.8   2E-17 5.2E-22  123.5  16.0  150  169-339     1-154 (161)
 18 cd01473 vWA_CTRP CTRP for  CS   99.8 7.9E-17   2E-21  119.9  18.4  178  169-364     1-192 (192)
 19 cd01471 vWA_micronemal_protein  99.8 5.7E-17 1.4E-21  120.8  17.5  169  169-356     1-183 (186)
 20 TIGR03436 acidobact_VWFA VWFA-  99.8 1.8E-16 4.5E-21  117.8  19.8  181  164-367    49-259 (296)
 21 cd01472 vWA_collagen von Wille  99.8 3.6E-17 9.2E-22  122.0  16.1  156  170-347     2-163 (164)
 22 cd01481 vWA_collagen_alpha3-VI  99.7 4.2E-16 1.1E-20  115.6  16.6  158  170-347     2-164 (165)
 23 TIGR00868 hCaCC calcium-activa  99.7 7.1E-17 1.8E-21  120.2  11.5  171  171-367   310-491 (874)
 24 cd01482 vWA_collagen_alphaI-XI  99.7   8E-16   2E-20  113.9  16.2  156  170-347     2-163 (164)
 25 cd00198 vWFA Von Willebrand fa  99.7 4.4E-16 1.1E-20  115.4  14.7  150  169-339     1-154 (161)
 26 cd01476 VWA_integrin_invertebr  99.7 2.5E-15 6.4E-20  110.9  15.3  153  169-344     1-162 (163)
 27 cd01462 VWA_YIEM_type VWA YIEM  99.6 1.9E-14 4.7E-19  105.6  15.2  144  170-338     2-146 (152)
 28 COG1240 ChlD Mg-chelatase subu  99.6 1.3E-13 3.3E-18  100.5  15.7  171  164-351    74-250 (261)
 29 COG4245 TerY Uncharacterized p  99.5 6.4E-13 1.6E-17   96.3  13.4  182  170-366     5-188 (207)
 30 cd01454 vWA_norD_type norD typ  99.5 2.5E-12 6.3E-17   92.8  15.4  152  170-342     2-171 (174)
 31 cd01477 vWA_F09G8-8_type VWA F  99.5 5.7E-12 1.4E-16   90.6  16.6  165  165-344    16-192 (193)
 32 COG4961 TadG Flp pilus assembl  99.4 2.9E-12 7.3E-17   92.4  11.2   68    3-70      9-76  (185)
 33 TIGR02442 Cob-chelat-sub cobal  99.3 1.6E-10   4E-15   81.9  13.9  165  164-345   504-687 (688)
 34 KOG2353 consensus               99.1 1.9E-09 4.9E-14   75.3  12.3  183  164-367   221-417 (1104)
 35 PRK13406 bchD magnesium chelat  99.1 1.3E-08 3.3E-13   70.3  16.1  171  165-356   398-580 (584)
 36 TIGR02031 BchD-ChlD magnesium   99.1 2.1E-09 5.4E-14   75.1  11.5  170  165-349   507-700 (705)
 37 cd01453 vWA_transcription_fact  98.9 3.8E-07 9.7E-12   61.5  16.5  169  170-357     5-177 (183)
 38 cd01457 vWA_ORF176_type VWA OR  98.8 1.4E-07 3.5E-12   64.1  11.5  157  169-337     3-163 (199)
 39 pfam00362 Integrin_beta Integr  98.7 1.3E-06 3.3E-11   58.2  14.9  192  158-363    90-344 (424)
 40 COG4548 NorD Nitric oxide redu  98.7 3.9E-07 9.9E-12   61.4  11.3  175  168-362   446-635 (637)
 41 smart00187 INB Integrin beta s  98.7 2.1E-06 5.3E-11   57.0  14.6  191  158-362    89-342 (423)
 42 pfam11775 CobT_C Cobalamin bio  98.6 9.5E-07 2.4E-11   59.1  11.6  163  169-359    13-215 (220)
 43 pfam04056 Ssl1 Ssl1-like. Ssl1  98.3 0.00013 3.4E-09   46.2  16.1  169  170-357    54-228 (250)
 44 COG2425 Uncharacterized protei  98.2 1.6E-05   4E-10   51.7   9.5  159  170-358   274-435 (437)
 45 COG2304 Uncharacterized protei  98.1 4.8E-05 1.2E-09   48.8   9.6  164  161-345    30-198 (399)
 46 KOG2807 consensus               98.1  0.0003 7.5E-09   44.0  13.5  167  169-358    61-235 (378)
 47 cd01455 vWA_F11C1-5a_type Von   98.0 0.00084 2.1E-08   41.3  15.2  174  171-361     3-188 (191)
 48 COG4655 Predicted membrane pro  98.0 3.2E-06 8.1E-11   55.9   2.2   58    7-64      2-59  (565)
 49 cd01452 VWA_26S_proteasome_sub  97.9  0.0013 3.3E-08   40.1  14.4  169  170-354     5-182 (187)
 50 KOG3768 consensus               97.8 0.00038 9.7E-09   43.4   9.8  192  171-363     4-229 (888)
 51 pfam05762 VWA_CoxE VWA domain   97.7 0.00024 6.2E-09   44.5   8.5  130  167-325    56-189 (223)
 52 pfam06707 DUF1194 Protein of u  97.7  0.0031   8E-08   37.8  15.5  179  168-364     3-204 (206)
 53 KOG1226 consensus               97.7 0.00051 1.3E-08   42.6   9.4  151  158-322   122-329 (783)
 54 cd01460 vWA_midasin VWA_Midasi  97.6  0.0051 1.3E-07   36.6  14.8  189  147-361    45-258 (266)
 55 pfam04285 DUF444 Protein of un  97.5  0.0062 1.6E-07   36.1  13.2  163  171-362   249-419 (421)
 56 PRK05325 hypothetical protein;  97.5  0.0072 1.8E-07   35.7  13.3  164  171-363   237-411 (414)
 57 pfam09967 DUF2201 Predicted me  97.2  0.0013 3.2E-08   40.3   6.6   96  169-299   288-385 (412)
 58 cd01459 vWA_copine_like VWA Co  97.0   0.024 6.2E-07   32.5  13.5  154  168-336    31-204 (254)
 59 COG4867 Uncharacterized protei  96.9   0.027 6.9E-07   32.2  12.0  156  170-354   465-641 (652)
 60 pfam11443 DUF2828 Domain of un  96.9   0.031 7.8E-07   31.9  11.1  142  169-324   327-472 (524)
 61 COG4547 CobT Cobalamin biosynt  96.8  0.0023 5.9E-08   38.7   4.7   82  256-355   520-610 (620)
 62 cd01458 vWA_ku Ku70/Ku80 N-ter  96.8   0.037 9.3E-07   31.4  13.4  156  170-337     3-187 (218)
 63 pfam07811 TadE TadE-like prote  96.6  0.0085 2.2E-07   35.2   6.3   42   15-56      1-42  (43)
 64 KOG1327 consensus               96.5   0.057 1.5E-06   30.2  12.3  152  167-337   284-462 (529)
 65 TIGR01651 CobT cobaltochelatas  96.4  0.0089 2.3E-07   35.1   5.5  140  170-331   400-578 (606)
 66 pfam07002 Copine Copine. This   96.1   0.087 2.2E-06   29.1  11.1  124  189-325    10-145 (145)
 67 COG5151 SSL1 RNA polymerase II  96.0   0.099 2.5E-06   28.8  11.2  170  167-358    86-266 (421)
 68 KOG2884 consensus               96.0    0.11 2.7E-06   28.6  15.3  170  170-356     5-184 (259)
 69 TIGR02877 spore_yhbH sporulati  95.9   0.075 1.9E-06   29.5   8.3  115  170-312   216-331 (392)
 70 PRK10997 yieM hypothetical pro  95.7    0.14 3.5E-06   28.0  14.2  143  165-336   319-464 (484)
 71 TIGR00873 gnd 6-phosphoglucona  95.5   0.036 9.1E-07   31.5   5.5   46  280-325    61-127 (480)
 72 COG2718 Uncharacterized conser  95.4    0.18 4.5E-06   27.3  13.2  165  171-363   249-419 (423)
 73 pfam03731 Ku_N Ku70/Ku80 N-ter  94.4    0.32 8.1E-06   25.7  14.4  186  171-366     2-220 (222)
 74 COG3552 CoxE Protein containin  93.9    0.35   9E-06   25.5   7.2  119  166-313   216-338 (395)
 75 COG3847 Flp Flp pilus assembly  92.7    0.48 1.2E-05   24.7   6.3   25    4-28      3-27  (58)
 76 pfam11265 Med25_VWA Mediator c  92.6    0.66 1.7E-05   23.8  10.3  162  169-336     6-188 (219)
 77 COG3864 Uncharacterized protei  92.4    0.47 1.2E-05   24.7   6.0   95  170-298   263-357 (396)
 78 LOAD_ku consensus               90.7     1.1 2.7E-05   22.6  14.1   53  171-226     2-55  (521)
 79 COG5148 RPN10 26S proteasome r  84.4     2.6 6.6E-05   20.3  12.5  143  170-330     5-150 (243)
 80 KOG2487 consensus               82.8     2.8 7.2E-05   20.0   4.8   72  283-358   165-238 (314)
 81 TIGR00627 tfb4 transcription f  82.1     2.7 6.9E-05   20.1   4.5   76  281-356   153-232 (295)
 82 cd01468 trunk_domain trunk dom  77.5     4.5 0.00011   18.8  16.4  160  168-348     3-224 (239)
 83 KOG4465 consensus               74.7     5.4 0.00014   18.3  11.0  118  166-308   425-544 (598)
 84 KOG2653 consensus               72.6       6 0.00015   18.0   5.6   10  171-180   173-182 (487)
 85 COG4726 PilX Tfp pilus assembl  69.2     7.2 0.00018   17.6   5.2   57    8-65      7-71  (196)
 86 pfam04811 Sec23_trunk Sec23/Se  58.3      12 0.00029   16.3  16.6  159  168-348     3-224 (241)
 87 pfam02060 ISK_Channel Slow vol  57.6      12  0.0003   16.3   4.5   40    6-45     31-70  (129)
 88 COG5242 TFB4 RNA polymerase II  57.2      12 0.00031   16.2   5.4   45  311-357   178-224 (296)
 89 TIGR02477 PFKA_PPi diphosphate  50.3      16  0.0004   15.5   3.3   39  285-329   170-208 (566)
 90 COG1681 FlaB Archaeal flagelli  50.0      15 0.00039   15.6   2.7   22   12-33      1-22  (209)
 91 PRK06939 2-amino-3-ketobutyrat  48.6      11 0.00029   16.3   1.9   60  301-362   334-394 (395)
 92 pfam04964 Flp_Fap Flp/Fap pili  44.9      19 0.00048   15.0   5.7   21    9-29      1-21  (47)
 93 cd01479 Sec24-like Sec24-like:  44.8      19 0.00048   15.0  16.5  174  168-363     3-241 (244)
 94 cd06353 PBP1_BmpA_Med_like Per  43.9      20  0.0005   14.9   7.7   19  307-327   191-209 (258)
 95 COG1991 Uncharacterized conser  43.7     9.5 0.00024   16.8   0.8   34    6-39      5-38  (131)
 96 pfam03850 Tfb4 Transcription f  43.3      20 0.00051   14.9  12.0   75  282-359   140-216 (271)
 97 pfam05814 DUF843 Baculovirus p  42.5      21 0.00053   14.8   5.3   43   10-53     18-74  (83)
 98 PRK08265 short chain dehydroge  41.7      21 0.00054   14.7   7.7   21  306-326   162-182 (261)
 99 COG2984 ABC-type uncharacteriz  37.2      25 0.00064   14.3   9.3   80  282-365   158-238 (322)
100 PRK08643 acetoin reductase; Va  35.9      26 0.00067   14.2   7.2   21  306-326   164-184 (256)
101 pfam04917 Shufflon_N Bacterial  34.1      28 0.00071   14.0   7.3   46   10-55      2-47  (356)
102 PRK12826 3-ketoacyl-(acyl-carr  33.3      29 0.00074   13.9   7.6   59  308-369   170-245 (253)
103 pfam02608 Bmp Basic membrane p  32.7      30 0.00075   13.9   8.7   21  307-327   198-218 (302)
104 TIGR00565 trpE_proteo anthrani  32.5      21 0.00053   14.8   1.1   40  281-322   277-316 (505)
105 cd06304 PBP1_BmpA_like Peripla  32.4      30 0.00076   13.8   7.4   19  307-327   193-211 (260)
106 pfam09001 DUF1890 Domain of un  32.2      30 0.00077   13.8   3.9   21  315-337    93-113 (138)
107 pfam11411 DNA_ligase_IV DNA li  30.8      32 0.00081   13.7   2.2   22  339-360    14-35  (36)
108 KOG4169 consensus               30.7      32 0.00081   13.6   6.2   10  313-322   171-180 (261)
109 pfam00331 Glyco_hydro_10 Glyco  30.3      32 0.00083   13.6   6.7   55  286-340   163-226 (308)
110 PRK05715 NADH dehydrogenase su  29.9      33 0.00084   13.6   4.0   39    3-41     45-83  (99)
111 TIGR02180 GRX_euk Glutaredoxin  29.3      34 0.00086   13.5   1.8   26  346-371    38-63  (85)
112 pfam00071 Ras Ras family. Incl  28.2      35  0.0009   13.4   4.4   59  306-364    91-162 (162)
113 cd06354 PBP1_BmpA_PnrA_like Pe  27.9      36 0.00091   13.3   7.2   13  312-326   202-214 (265)
114 smart00633 Glyco_10 Glycosyl h  27.9      36 0.00091   13.3   6.8   54  287-340   120-182 (254)
115 PRK05872 short chain dehydroge  27.6      36 0.00092   13.3   8.8   19  307-325   167-185 (296)
116 cd02012 TPP_TK Thiamine pyroph  27.2      37 0.00094   13.3   5.6   83  282-367   126-221 (255)
117 PRK10538 3-hydroxy acid dehydr  27.2      37 0.00094   13.3   9.0   51  307-360   160-221 (248)
118 TIGR00937 2A51 chromate transp  27.0      37 0.00095   13.3   4.2   49   11-59     62-113 (390)
119 PRK01215 competence damage-ind  26.7      38 0.00096   13.2   5.0   20  345-364   232-251 (264)
120 PRK08541 flagellin; Validated   25.2      40   0.001   13.1   2.5   22   12-33      1-22  (212)
121 PRK06138 short chain dehydroge  25.1      40   0.001   13.0   7.4   20  307-326   166-185 (252)
122 TIGR02848 spore_III_AC stage I  24.7      41   0.001   13.0   2.8   29    6-34     23-51  (64)
123 cd06325 PBP1_ABC_uncharacteriz  24.6      41   0.001   13.0   8.5   30  286-321   187-216 (281)
124 PRK08324 short chain dehydroge  24.6      41   0.001   13.0   8.5   77  286-369   422-502 (676)
125 PRK07523 gluconate 5-dehydroge  24.2      42  0.0011   12.9   7.5   20  307-326   168-187 (251)
126 cd00765 Pyrophosphate_PFK Phos  23.2      44  0.0011   12.8   3.9   16  166-181   164-179 (550)
127 TIGR00421 ubiX_pad polyprenyl   22.2      46  0.0012   12.7   2.7   33  283-320   111-143 (181)
128 PRK07576 short chain dehydroge  22.1      46  0.0012   12.7   7.2   50  308-360   170-232 (260)
129 PRK06113 7-alpha-hydroxysteroi  21.3      48  0.0012   12.6   7.5   20  307-326   172-191 (255)
130 cd03132 GATase1_catalase Type   21.0      48  0.0012   12.6   5.4   44  303-350    82-128 (142)
131 PRK08277 D-mannonate oxidoredu  20.4      50  0.0013   12.5   7.0   19  307-325   187-205 (278)
132 PRK07505 hypothetical protein;  20.4      50  0.0013   12.5   2.4   60  301-362   343-403 (405)
133 pfam04392 ABC_sub_bind ABC tra  20.2      51  0.0013   12.4   8.2   30  286-321   186-215 (292)
134 TIGR02764 spore_ybaN_pdaB poly  20.2      51  0.0013   12.4   2.2   36  287-323   160-195 (198)

No 1  
>PRK13685 hypothetical protein; Provisional
Probab=99.96  E-value=6.4e-27  Score=180.87  Aligned_cols=191  Identities=19%  Similarity=0.291  Sum_probs=155.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             74069985276311566787214898999998750023355553110479878863674178166655878999997401
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRL  247 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l  247 (371)
                      ..++++++|.|+||....-. .+|++.++..+..+++.....      .|+|++.|...+...+|+|.|+..++..++.+
T Consensus        88 ~~~i~l~lD~S~SM~a~D~~-p~Rl~~ak~~~~~fi~~~~~~------driGlv~Fa~~a~~~~plT~D~~~~~~~l~~l  160 (326)
T PRK13685         88 RAVVMLVIDVSQSMRATDVE-PNRLAAAQEAAKQFADQLTPG------INLGLIAFAGTATVLVSPTTNREATKNALDKL  160 (326)
T ss_pred             CCCEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEECCCCCCCHHHHHHHHHHC
T ss_conf             88679999897565587889-568999999999999737988------82899996587201489875399999999846


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             56887456423788999987421101234677766616999984045888888--9789999999999789879999941
Q gi|254780833|r  248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI--DNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~--~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                      .++.+|.+..|+..+.+.+.......   ...+....+.|||+|||+||.+..  ++......++.+|+.||+|||||+|
T Consensus       161 ~~~~~taiG~ai~~Al~~l~~~~~~~---~~~~~~~~~~IILLTDG~~n~g~~~~~p~~~~~AA~~A~~~gi~IyTIgvG  237 (326)
T PRK13685        161 QLADRTATGEGIFTALQAIATVGAVI---GGGDTPPPARIVLFSDGKETVPTNPDNPKGAYTAARTAKDQGVPISTISFG  237 (326)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             87888864068999999998633201---456777886799974899777889887302999999999859948999977


Q ss_pred             CC--------------CCHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHHHEEEE
Q ss_conf             86--------------4279899833--8980898289899999999999964000787
Q gi|254780833|r  326 AE--------------AADQFLKNCA--SPDRFYSVQNSRKLHDAFLRIGKEMVKQRIL  368 (371)
Q Consensus       326 ~~--------------~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~I~~~i~~~~i~  368 (371)
                      .+              -|++.||++|  ++|.||.++|.++|+++|++|.+.+....++
T Consensus       238 t~~g~~~~~g~~~~~~lDe~~L~~IA~~TGG~yfrA~d~~~L~~Iy~~i~~~i~~~~~~  296 (326)
T PRK13685        238 TPYGFVEINGQRQPVPVDDETLKKIAQLSGGEFYTAASLEELRAVYATLQQQIGYETIK  296 (326)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCEEEC
T ss_conf             99884354784034568999999999972987997199999999999963331603311


No 2  
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.95  E-value=1.3e-26  Score=178.94  Aligned_cols=166  Identities=19%  Similarity=0.299  Sum_probs=143.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHHHHHC
Q ss_conf             406998527631156678721489899999875002335555311047987886367417816665--587899999740
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQEKINR  246 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~~i~~  246 (371)
                      +|++||+|.||||..      .+++.+++++..+++.+...      .|++++.|++.+....|++  .+...+..+|+.
T Consensus         1 ldiv~vlD~SGSM~g------~~~~~~k~a~~~~l~~l~~~------dr~~iv~F~~~~~~~~~~~~~~~~~~~~~~i~~   68 (170)
T cd01465           1 LNLVFVIDRSGSMDG------PKLPLVKSALKLLVDQLRPD------DRLAIVTYDGAAETVLPATPVRDKAAILAAIDR   68 (170)
T ss_pred             CCEEEEEECCCCCCC------CHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEECCCCCCHHHHHHHHHHHHC
T ss_conf             919999908868897------19999999999999858987------879999835861551587866679999998743


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             15688745642378899998742110123467776661699998404588888897899999999997898799999418
Q gi|254780833|r  247 LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       247 l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~  326 (371)
                      +.++|+|++..|+..+++.+....         .++..+.|||+|||++|.+..+.......+...++.+|+||+||||.
T Consensus        69 l~~~G~T~~~~~l~~a~~~~~~~~---------~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~i~i~tiGiG~  139 (170)
T cd01465          69 LTAGGSTAGGAGIQLGYQEAQKHF---------VPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD  139 (170)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             898998527799999999998633---------78875069998158856798898999999999874388624898088


Q ss_pred             CCCHHHHHHHC--CCCEEEEECCHHHHHHHH
Q ss_conf             64279899833--898089828989999999
Q gi|254780833|r  327 EAADQFLKNCA--SPDRFYSVQNSRKLHDAF  355 (371)
Q Consensus       327 ~~~~~~l~~cA--s~~~~y~~~~~~~L~~af  355 (371)
                      +.+.++|+.+|  ++|+||++++++||.++|
T Consensus       140 ~~~~~~L~~iA~~~~G~~~~v~~~~~l~~~f  170 (170)
T cd01465         140 NYNEDLMEAIADAGNGNTAYIDNLAEARKVF  170 (170)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCHHHHHHHC
T ss_conf             7999999999975798899849999999639


No 3  
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.94  E-value=1e-25  Score=173.56  Aligned_cols=163  Identities=26%  Similarity=0.376  Sum_probs=135.2

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             74069985276311566787214898999998750023355553110479878863674178166655878999997401
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRL  247 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l  247 (371)
                      ++|++||+|.||||.........|++.+++++..+++...       ..|++++.|++.+...+|++.+...++..++.+
T Consensus         2 G~dvvlvlD~SgSM~~~d~~~~~rl~~ak~~~~~~i~~~~-------~drvglv~Fs~~a~~~~plT~d~~~~~~~l~~i   74 (180)
T cd01467           2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRRE-------NDRIGLVVFAGAAFTQAPLTLDRESLKELLEDI   74 (180)
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-------CCEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
T ss_conf             6279999989847578666785899999999999997199-------975999997287367337665689999998622


Q ss_pred             C---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             5---6887456423788999987421101234677766616999984045888888978999999999978987999994
Q gi|254780833|r  248 I---FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV  324 (371)
Q Consensus       248 ~---~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~  324 (371)
                      .   ++++|++..++..+.+.|.+.           ....|+|||+|||++|.+..+.   ...++.+++.||+||+||+
T Consensus        75 ~~~~~~ggT~i~~al~~a~~~l~~~-----------~~~~~~ivLlTDG~~n~g~~~~---~~~~~~a~~~gi~v~tIGv  140 (180)
T cd01467          75 KIGLAGQGTAIGDAIGLAIKRLKNS-----------EAKERVIVLLTDGENNAGEIDP---ATAAELAKNKGVRIYTIGV  140 (180)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCC-----------CCCCCEEEEEECCCCCCCCCCH---HHHHHHHHHCCCEEEEEEE
T ss_conf             4453236860899999999976424-----------7666379998058866787699---9999999976998999997


Q ss_pred             CCCC-----------CHHHHHHHC--CCCEEEEECCHHHH
Q ss_conf             1864-----------279899833--89808982898999
Q gi|254780833|r  325 QAEA-----------ADQFLKNCA--SPDRFYSVQNSRKL  351 (371)
Q Consensus       325 ~~~~-----------~~~~l~~cA--s~~~~y~~~~~~~L  351 (371)
                      |.+.           +++.|+++|  ++|+||++.|++||
T Consensus       141 G~~~~~~~~~~~~~~d~~~L~~iA~~tgG~yy~a~~~~eL  180 (180)
T cd01467         141 GKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALDGFEL  180 (180)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHC
T ss_conf             7898887688876559999999999619979972874649


No 4  
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.91  E-value=7.2e-23  Score=156.42  Aligned_cols=162  Identities=20%  Similarity=0.217  Sum_probs=130.7

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CC---HHHHH
Q ss_conf             67406998527631156678721489899999875002335555311047987886367417816665--58---78999
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WG---VQHIQ  241 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~---~~~~~  241 (371)
                      .|.|+++|+|.||||..      .+++.+++++..+++.+...      .+++++.|++.+....|..  .+   .....
T Consensus         1 ~P~div~viD~SgSM~g------~~l~~ak~a~~~~l~~l~~~------d~~~iv~F~~~~~~~~~~~~~~~~~~~~~a~   68 (171)
T cd01461           1 LPKEVVFVIDTSGSMSG------TKIEQTKEALLTALKDLPPG------DYFNIIGFSDTVEEFSPSSVSATAENVAAAI   68 (171)
T ss_pred             CCCEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHCCCC------CEEEEEEECCEEEEECCCCEECCHHHHHHHH
T ss_conf             98469999917988986------39999999999999829987------8799999878065980775307999999999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             99740156887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r  242 EKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       242 ~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .+|+.+.++|+|++..|+.++++.+...           +...+.|||+|||+.+..    ......+..+++.+|+||+
T Consensus        69 ~~i~~l~~~G~T~i~~aL~~a~~~l~~~-----------~~~~~~iillTDG~~~~~----~~~~~~~~~~~~~~i~i~t  133 (171)
T cd01461          69 EYVNRLQALGGTNMNDALEAALELLNSS-----------PGSVPQIILLTDGEVTNE----SQILKNVREALSGRIRLFT  133 (171)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHC-----------CCCCCEEEEECCCCCCCH----HHHHHHHHHHHCCCCEEEE
T ss_conf             8875478899866999999999988635-----------798618999757886886----8999999997448963999


Q ss_pred             EEECCCCCHHHHHHHC--CCCEEEEECCHHHHHHHH
Q ss_conf             9941864279899833--898089828989999999
Q gi|254780833|r  322 IGVQAEAADQFLKNCA--SPDRFYSVQNSRKLHDAF  355 (371)
Q Consensus       322 Ig~~~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af  355 (371)
                      ||||.+.+..+|+.+|  ++|.||++++.++|.+.+
T Consensus       134 ig~G~~~~~~~L~~iA~~~~G~~~~v~~~~~l~~~~  169 (171)
T cd01461         134 FGIGSDVNTYLLERLAREGRGIARRIYETDDIESQL  169 (171)
T ss_pred             EEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf             997897999999999972898899889878999976


No 5  
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, 
Probab=99.90  E-value=1.2e-22  Score=155.15  Aligned_cols=149  Identities=26%  Similarity=0.331  Sum_probs=122.7

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHHHHHHH
Q ss_conf             4069985276311566787214898999998750023355553110479878863674178166655----878999997
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQHIQEKI  244 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~~~~~i  244 (371)
                      +|+++|+|+||||..      ++++.+++++..+++.+...      .+++++.|++.+....|++.    ++..++..|
T Consensus         1 ~div~vlD~SGSM~g------~~l~~~k~a~~~~~~~L~~~------d~v~iV~F~~~a~~~~pl~~~~~~~~~~~~~~i   68 (155)
T cd01466           1 VDLVAVLDVSGSMAG------DKLQLVKHALRFVISSLGDA------DRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVV   68 (155)
T ss_pred             CEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCEEEECCEECCHHHHHHHHHHH
T ss_conf             939999908989887------38999999999999848976------748999956874262046037999999999987


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             40156887456423788999987421101234677766616999984045888888978999999999978987999994
Q gi|254780833|r  245 NRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV  324 (371)
Q Consensus       245 ~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~  324 (371)
                      +.+.++|+|++..|+..+.+.+....         .+++.+.|||+|||++|.+        ..+..+++.+|+||||||
T Consensus        69 ~~l~~~GgT~i~~gl~~a~~~l~~~~---------~~~~~~~IiLlTDG~~n~~--------~~~~~~~~~~i~i~tiGi  131 (155)
T cd01466          69 DGLQAGGGTNVVGGLKKALKVLGDRR---------QKNPVASIMLLSDGQDNHG--------AVVLRADNAPIPIHTFGL  131 (155)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCEEEEEECCCCCCHH--------HHHHHHHCCCCEEEEEEE
T ss_conf             53776888726799999999998436---------6898308999826986405--------778998717973999997


Q ss_pred             CCCCCHHHHHHHC--CCCEEEEEC
Q ss_conf             1864279899833--898089828
Q gi|254780833|r  325 QAEAADQFLKNCA--SPDRFYSVQ  346 (371)
Q Consensus       325 ~~~~~~~~l~~cA--s~~~~y~~~  346 (371)
                      |.+.++.+|+.+|  ++|+||+++
T Consensus       132 G~~~d~~lL~~iA~~~gG~~~~v~  155 (155)
T cd01466         132 GASHDPALLAFIAEITGGTFSYVK  155 (155)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             886789999999976997799949


No 6  
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if 
Probab=99.88  E-value=3.1e-21  Score=146.54  Aligned_cols=171  Identities=19%  Similarity=0.182  Sum_probs=125.1

Q ss_pred             ECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC--------
Q ss_conf             100013467406998527631156678721489899999875002335555311047987886367417816--------
Q gi|254780833|r  160 KISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF--------  231 (371)
Q Consensus       160 ~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------  231 (371)
                      +...+...|.++++|+|.||||....+.+.+|++.++.++..+++.+...      .+++++.|++......        
T Consensus        12 p~~~~~~~P~~~~lVlD~SGSM~~~~~~g~~rl~~ak~a~~~~v~~l~~~------drvgLv~F~~~~~~~~d~~~~~~~   85 (206)
T cd01456          12 PVETEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDG------TRLGLWTFSGDGDNPLDVRVLVPK   85 (206)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC------CEEEEEEECCCCCCCCCCCEECCC
T ss_conf             97568989873899997987877878776459999999999999857999------879999977867778885132145


Q ss_pred             -CC--------CCCHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             -66--------558789999974015-68874564237889999874211012346777666169999840458888889
Q gi|254780833|r  232 -PL--------AWGVQHIQEKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID  301 (371)
Q Consensus       232 -~l--------t~~~~~~~~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~  301 (371)
                       ++        ..++..+...++.+. +.|+|.+..++..+...+.             +...+.|||||||++|.+...
T Consensus        86 ~~~~~~~~~~~~~~r~~l~~~i~~l~~~~G~T~l~~al~~a~~~~~-------------~~~~~~IvLlTDG~~~~g~~~  152 (206)
T cd01456          86 GCLTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD-------------PGRVNVVVLITDGEDTCGPDP  152 (206)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-------------CCCCCEEEEEECCCCCCCCCH
T ss_conf             6544434552377899999999745778896479999999998627-------------787647999923764468885


Q ss_pred             HHHHHHHHHH-HHHCCCEEEEEEECCCCCHHHHHHHC--CCCEE-EEECCHH
Q ss_conf             7899999999-99789879999941864279899833--89808-9828989
Q gi|254780833|r  302 NKESLFYCNE-AKRRGAIVYAIGVQAEAADQFLKNCA--SPDRF-YSVQNSR  349 (371)
Q Consensus       302 ~~~~~~~c~~-~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~-y~~~~~~  349 (371)
                      ......+... .+..+|+||+||||.+.+..+|+++|  ++|.| |.++++.
T Consensus       153 ~~~~~~l~~~~~~~~~v~V~tig~G~d~d~~~L~~IA~~tgG~y~y~~~d~~  204 (206)
T cd01456         153 CEVARELAKRRTPAPPIKVNVIDFGGDADRAELEAIAEATGGTYAYNQSDLA  204 (206)
T ss_pred             HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             9999999983177999589999718865899999999742978995167602


No 7  
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain  is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.87  E-value=9.1e-21  Score=143.73  Aligned_cols=166  Identities=20%  Similarity=0.272  Sum_probs=127.0

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCC---------CC
Q ss_conf             346740699852763115667872148989999987500233555531104798788636741781666---------55
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPL---------AW  235 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l---------t~  235 (371)
                      ...|.|+++|+|.||||..      .+++.+++++..+++.+...+      +++++.|++.+....|.         ..
T Consensus        10 ~~~Pkdvv~vlD~SGSM~g------~kl~~ak~a~~~il~~L~~~D------~~~iv~Fs~~~~~~~p~~~~~~~~~t~~   77 (190)
T cd01463          10 ATSPKDIVILLDVSGSMTG------QRLHLAKQTVSSILDTLSDND------FFNIITFSNEVNPVVPCFNDTLVQATTS   77 (190)
T ss_pred             CCCCCEEEEEEECCCCCCC------CHHHHHHHHHHHHHHHCCCCC------EEEEEEECCCCEEEECCCCCCEEECCHH
T ss_conf             7898269999979998897------349999999999998199877------9999996897536302456843368999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf             878999997401568874564237889999874211012346777666169999840458888889789999999999--
Q gi|254780833|r  236 GVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAK--  313 (371)
Q Consensus       236 ~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k--  313 (371)
                      ++..++.+|+.+.+.|+|++..|+..|++.|........  ........|.|||+|||.++..    ..........+  
T Consensus        78 n~~~~~~~i~~l~~~G~Tn~~~al~~A~~~l~~~~~~~~--~~~~~~~~~~IillTDG~~~~~----~~i~~~~~~~~~~  151 (190)
T cd01463          78 NKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNH--SGSRSQCNQAIMLITDGVPENY----KEIFDKYNWDKNS  151 (190)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHHHCC
T ss_conf             999999999828579872489999999999987420155--6655555515999836988757----8899999997557


Q ss_pred             HCCCEEEEEEECCC-CCHHHHHHHC--CCCEEEEECCH
Q ss_conf             78987999994186-4279899833--89808982898
Q gi|254780833|r  314 RRGAIVYAIGVQAE-AADQFLKNCA--SPDRFYSVQNS  348 (371)
Q Consensus       314 ~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~~~~  348 (371)
                      ..+|+|||+|||.+ .+.++|+.+|  +.|+||++.+.
T Consensus       152 ~~~i~ift~G~G~~~~d~~~L~~iA~~~~G~y~~I~~~  189 (190)
T cd01463         152 EIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQSL  189 (190)
T ss_pred             CCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf             99879999996799778799999998099569978889


No 8  
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.87  E-value=2.4e-20  Score=141.20  Aligned_cols=176  Identities=17%  Similarity=0.317  Sum_probs=129.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC----CCHHHHHHHH
Q ss_conf             406998527631156678721489899999875002335555311047987886367417816665----5878999997
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA----WGVQHIQEKI  244 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt----~~~~~~~~~i  244 (371)
                      +|++|++|.|+|++.      +..+..++++..+++.+.....   .+|++++.|++.+...+++.    .+...+...|
T Consensus         1 lDivfllD~SgSIg~------~nF~~~k~Fv~~lv~~~~~~~~---~~rvgvv~ys~~~~~~f~l~~~~~~~~~~~~~~i   71 (198)
T cd01470           1 LNIYIALDASDSIGE------EDFDEAKNAIKTLIEKISSYEV---SPRYEIISYASDPKEIVSIRDFNSNDADDVIKRL   71 (198)
T ss_pred             CEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCCCC---CCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf             919999979898887------8899999999999998446687---7538999815885389971576666899999999


Q ss_pred             HCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHH---------HHHH
Q ss_conf             40156-----887456423788999987421101234677766616999984045888888978999---------9999
Q gi|254780833|r  245 NRLIF-----GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESL---------FYCN  310 (371)
Q Consensus       245 ~~l~~-----~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~---------~~c~  310 (371)
                      +.+..     +++|++..+++..+..+......   .....++.+|++||+|||..|.+..+.....         ....
T Consensus        72 ~~i~y~~~~~~~gT~t~~AL~~~~~~~~~~~~~---~~~~~~~v~~v~illTDG~sn~g~~P~~~~~~~~~~~~~~~~a~  148 (198)
T cd01470          72 EDFNYDDHGDKTGTNTAAALKKVYERMALEKVR---NKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSD  148 (198)
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             846033577886468999999999986555304---66444567559999737854578993367888777664101456


Q ss_pred             HHHHCCCEEEEEEECCCCCHHHHHHHCC--CC--EEEEECCHHHHHHHHH
Q ss_conf             9997898799999418642798998338--98--0898289899999999
Q gi|254780833|r  311 EAKRRGAIVYAIGVQAEAADQFLKNCAS--PD--RFYSVQNSRKLHDAFL  356 (371)
Q Consensus       311 ~~k~~gi~i~tIg~~~~~~~~~l~~cAs--~~--~~y~~~~~~~L~~af~  356 (371)
                      .+++.||.||+||+|.+.+...|+.+||  |+  |+|.+++.++|+++|+
T Consensus       149 ~~r~~gi~ifaiGVG~~~d~~eL~~IAS~~~~e~hvf~v~df~~L~~i~d  198 (198)
T cd01470         149 NPREDYLDVYVFGVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEVFD  198 (198)
T ss_pred             HHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHC
T ss_conf             78873947999996661599999998579998716999689999998639


No 9  
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.87  E-value=5e-20  Score=139.25  Aligned_cols=178  Identities=22%  Similarity=0.388  Sum_probs=140.2

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHHHH
Q ss_conf             67406998527631156678721489899999875002335555311047987886367417816665--5878999997
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQEKI  244 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~~i  244 (371)
                      .|+|++|++|.|+|++.      +.....++.+..+++.++.   ..+.+|++++.|++.+....+|.  .++..+..+|
T Consensus         1 gplDlvFllD~S~Svg~------~nF~~~k~Fv~~lv~~f~I---~~~~trVgvv~ys~~~~~~f~l~~~~~k~~l~~aI   71 (224)
T cd01475           1 GPTDLVFLIDSSRSVRP------ENFELVKQFLNQIIDSLDV---GPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAV   71 (224)
T ss_pred             CCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHH
T ss_conf             97439999948899898------9999999999999985687---99852999999658278999668867889999999


Q ss_pred             HCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             40156-88745642378899998742110123467776661699998404588888897899999999997898799999
Q gi|254780833|r  245 NRLIF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG  323 (371)
Q Consensus       245 ~~l~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg  323 (371)
                      +.+.. +|+|++..|+..+.+.++.......   ....+..|++|+||||..++.      .......+|++||+||+||
T Consensus        72 ~~i~~~gggT~Tg~AL~~~~~~~f~~~~G~R---p~~~~vpkvlIviTDG~s~D~------v~~~A~~lr~~GV~ifaVG  142 (224)
T cd01475          72 RRMEYLETGTMTGLAIQYAMNNAFSEAEGAR---PGSERVPRVGIVVTDGRPQDD------VSEVAAKARALGIEMFAVG  142 (224)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCCEEEEEECCCCCCCC------HHHHHHHHHHCCCEEEEEE
T ss_conf             8636138844699999999997277023998---755689859999717987663------8999999998798899996


Q ss_pred             ECCCCCHHHHHHHCC-C--CEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             418642798998338-9--808982898999999999999640
Q gi|254780833|r  324 VQAEAADQFLKNCAS-P--DRFYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       324 ~~~~~~~~~l~~cAs-~--~~~y~~~~~~~L~~af~~I~~~i~  363 (371)
                      ++ +.+...|+.+|| |  .|+|.+++.++|...-+.|.++|.
T Consensus       143 Vg-~~~~~eL~~IAs~P~~~hvf~v~~F~~l~~l~~~l~~~iC  184 (224)
T cd01475         143 VG-RADEEELREIASEPLADHVFYVEDFSTIEELTKKFQGKIC  184 (224)
T ss_pred             CC-CCCHHHHHHHHCCCCHHCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             37-4798999998559737568994798899999999876118


No 10 
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.86  E-value=8.6e-20  Score=137.85  Aligned_cols=171  Identities=19%  Similarity=0.263  Sum_probs=130.9

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCCCEEEEEEEEEECCCCEEECCCC---CCHHHH
Q ss_conf             6740699852763115667872148989999987500233555---5311047987886367417816665---587899
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSI---PDVNNVVRSGLVTFSSKIVQTFPLA---WGVQHI  240 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~lt---~~~~~~  240 (371)
                      .|+|++|++|.|+|++.      ...+..++.+..+++.+...   +..++.+|+|++.|++.+....++.   .+...+
T Consensus         1 gpvDlvFllD~S~Sv~~------~~F~~~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~~~~~~~~~~~~~l   74 (186)
T cd01480           1 GPVDITFVLDSSESVGL------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSL   74 (186)
T ss_pred             CCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHH
T ss_conf             97469999968898787------899999999999999985301345687743898998558427986047775889999


Q ss_pred             HHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             99974015-68874564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r  241 QEKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV  319 (371)
Q Consensus       241 ~~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i  319 (371)
                      +..|+.+. .+|+|++..|+.++.+.+...         ..+...|++||+|||..+....  .......+.+|+.||+|
T Consensus        75 ~~~I~~i~y~gG~T~tg~AL~~a~~~~~~~---------~r~~~~kvlvliTDG~S~~~~~--~~~~~aa~~lr~~GV~i  143 (186)
T cd01480          75 KEAVDNLEYIGGGTFTDCALKYATEQLLEG---------SHQKENKFLLVITDGHSDGSPD--GGIEKAVNEADHLGIKI  143 (186)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHC---------CCCCCCEEEEEEECCCCCCCCC--HHHHHHHHHHHHCCCEE
T ss_conf             999975013589862999999999998613---------6789853899984587666740--66999999999879899


Q ss_pred             EEEEECCCCCHHHHHHHCC-CCEEEEECCHHHHHHHH
Q ss_conf             9999418642798998338-98089828989999999
Q gi|254780833|r  320 YAIGVQAEAADQFLKNCAS-PDRFYSVQNSRKLHDAF  355 (371)
Q Consensus       320 ~tIg~~~~~~~~~l~~cAs-~~~~y~~~~~~~L~~af  355 (371)
                      |+||+|.. +.+.|+.||+ |++.|.++|.++|.+-|
T Consensus       144 faVGVG~~-~~~eL~~IAs~p~~~~~~~~f~~L~~~~  179 (186)
T cd01480         144 FFVAVGSQ-NEEPLSRIACDGKSALYRENFAELLWSF  179 (186)
T ss_pred             EEEEECCC-CHHHHHHHHCCCCCEEEECCHHHHHCCH
T ss_conf             99994748-8799999858997389736899870111


No 11 
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.86  E-value=3e-20  Score=140.60  Aligned_cols=173  Identities=21%  Similarity=0.228  Sum_probs=134.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             74069985276311566787214898999998750023355553110479878863674178166655878999997401
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRL  247 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l  247 (371)
                      .+.++||+|.||||..      ++++.+++++..+++.+...+.....+++++++|++.+....|++.-   ..-.+..+
T Consensus         3 rlpvvlvlD~SGSM~G------~~i~~~k~al~~~~~~L~~d~~a~~~~~vsVItF~s~a~~~~pl~~~---~~~~~~~L   73 (176)
T cd01464           3 RLPIYLLLDTSGSMAG------EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL---ESFQPPRL   73 (176)
T ss_pred             CCCEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCCEEEECCCCCH---HHCCCCCC
T ss_conf             3578999978999998------47999999999999997118310113269999978951780586347---66475547


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             56887456423788999987421101234677766616999984045888888978999999999978987999994186
Q gi|254780833|r  248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      .++|+|++..|+..+...|........  .......+++|||||||.+|+   ++......+..++..+++|+++|+|.+
T Consensus        74 ~a~G~T~~g~al~~a~~~l~~~~~~~~--~~~~~~~~P~I~LlTDG~PtD---~~~~~~~~~~~~~~~~~~i~a~giG~d  148 (176)
T cd01464          74 TASGGTSMGAALELALDCIDRRVQRYR--ADQKGDWRPWVFLLTDGEPTD---DLTAAIERIKEARDSKGRIVACAVGPK  148 (176)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCCCC---CHHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf             778998199999999999998652236--556677531799966899887---589999999988863976999997387


Q ss_pred             CCHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf             42798998338980898289899999999
Q gi|254780833|r  328 AADQFLKNCASPDRFYSVQNSRKLHDAFL  356 (371)
Q Consensus       328 ~~~~~l~~cAs~~~~y~~~~~~~L~~af~  356 (371)
                      ++.+.|++++..  .....+..++.+.|+
T Consensus       149 ad~~~L~~is~~--~~~~~~~~~f~~ff~  175 (176)
T cd01464         149 ADLDTLKQITEG--VPLLDDALSGLNFFK  175 (176)
T ss_pred             CCHHHHHHHHCC--CCCCCCHHHHHHHHC
T ss_conf             189999988577--745345345888508


No 12 
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.85  E-value=2e-19  Score=135.66  Aligned_cols=179  Identities=23%  Similarity=0.295  Sum_probs=135.0

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHH-
Q ss_conf             3467406998527631156678721489899999875002335555311047987886367417816665587899999-
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEK-  243 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~-  243 (371)
                      +..++|++|++|.|+|++.+|.    +   .++.+..+++.+.     ...+|+|++.|++.+....+|+.+.+..... 
T Consensus         1 C~~~~DivFllD~S~Sv~~~f~----~---~~~Fv~~lv~~f~-----~~~~rvgvv~fS~~~~~~f~l~~~~~~~~~~~   68 (185)
T cd01474           1 CAGHFDLYFVLDKSGSVAANWI----E---IYDFVEQLVDRFN-----SPGLRFSFITFSTRATKILPLTDDSSAIIKGL   68 (185)
T ss_pred             CCCCEEEEEEEECCCCCCCCHH----H---HHHHHHHHHHHCC-----CCCEEEEEEEECCCCCEEEECCCCHHHHHHHH
T ss_conf             9986138999978998765769----9---9999999998569-----98749999998698318984578707889999


Q ss_pred             --HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             --740156887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r  244 --INRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       244 --i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                        ++...++|+|++..|+..+.+.++....       ++....|++|++|||..++....  ........+|+.||.||+
T Consensus        69 ~~~~~~~~~G~T~tg~AL~~a~~~~f~~~~-------g~R~~~kvlivlTDG~s~~~~~~--~~~~~a~~lr~~gV~i~a  139 (185)
T cd01474          69 EVLKKVTPSGQTYIHEGLENANEQIFNRNG-------GGRETVSVIIALTDGQLLLNGHK--YPEHEAKLSRKLGAIVYC  139 (185)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCEEEEEEECCCCCCCCCH--HHHHHHHHHHHCCCEEEE
T ss_conf             998876158937899999999997503236-------99887628999932665676214--179999999978948999


Q ss_pred             EEECCCCCHHHHHHHCC-CCEEEEECC-HHHHHHHHHHHHHHHHHE
Q ss_conf             99418642798998338-980898289-899999999999964000
Q gi|254780833|r  322 IGVQAEAADQFLKNCAS-PDRFYSVQN-SRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       322 Ig~~~~~~~~~l~~cAs-~~~~y~~~~-~~~L~~af~~I~~~i~~~  365 (371)
                      ||++ +.++..|+.+|| |.|.|.+++ .++|......|.+++...
T Consensus       140 VGV~-~~~~~eL~~IAs~p~~vf~v~~~F~~L~~i~~~l~~~iC~~  184 (185)
T cd01474         140 VGVT-DFLKSQLINIADSKEYVFPVTSGFQALSGIIESVVKKACIE  184 (185)
T ss_pred             EECC-CCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9716-25999999871998648983475777899999999852879


No 13 
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.83  E-value=1.5e-18  Score=130.33  Aligned_cols=165  Identities=18%  Similarity=0.278  Sum_probs=130.1

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEEEEEEC-CCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             6998527631156678721489899999875002-33555531104798788636-741781666558789999974015
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLD-IIKSIPDVNNVVRSGLVTFS-SKIVQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~-~~~~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      ++||+|.||||...     +|+..++.++..++. .+..      ..++++++|. +.+....|+|.+...++..|+.+.
T Consensus         3 vvfvvD~SGSM~~~-----~rl~~aK~a~~~ll~d~~~~------~D~v~lv~F~g~~a~~~lppT~~~~~~~~~l~~L~   71 (178)
T cd01451           3 VIFVVDASGSMAAR-----HRMAAAKGAVLSLLRDAYQR------RDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLP   71 (178)
T ss_pred             EEEEEECCCCCCCC-----CHHHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999898788875-----67999999999999974346------78899999759755585688765799999872167


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             68874564237889999874211012346777666169999840458888889789-99999999978987999994186
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKE-SLFYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~-~~~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      ++|+|++..|+..++..+....        ..+...+++||+|||.+|.+..+... ...++...++.||...+|+++.+
T Consensus        72 ~gG~T~l~~gL~~a~~~~~~~~--------~~~~~~~~iiLlTDG~~N~g~~~~~~~~~~~a~~~~~~gi~~~vId~~~~  143 (178)
T cd01451          72 TGGGTPLAAGLLAAYELAAEQA--------RDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGR  143 (178)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHC--------CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             8898519999999999999850--------27898439999846986679995126999999999866997899979999


Q ss_pred             C-CHHHHHHHC--CCCEEEEECCH--HHHHHH
Q ss_conf             4-279899833--89808982898--999999
Q gi|254780833|r  328 A-ADQFLKNCA--SPDRFYSVQNS--RKLHDA  354 (371)
Q Consensus       328 ~-~~~~l~~cA--s~~~~y~~~~~--~~L~~a  354 (371)
                      . ...+|+++|  .+|+||..++.  ++|.++
T Consensus       144 ~~~~~~~~~LA~~~~g~Y~~id~l~~~~i~~~  175 (178)
T cd01451         144 PVRRGLAKDLARALGGQYVRLPDLSADAIASA  175 (178)
T ss_pred             CCCHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf             76748999999942996998997998899998


No 14 
>pfam00092 VWA von Willebrand factor type A domain.
Probab=99.79  E-value=2.5e-17  Score=123.01  Aligned_cols=169  Identities=23%  Similarity=0.369  Sum_probs=128.2

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCH--HHHHHHH--H
Q ss_conf             06998527631156678721489899999875002335555311047987886367417816665587--8999997--4
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGV--QHIQEKI--N  245 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~--~~~~~~i--~  245 (371)
                      |++||+|.|+||..      .++..+++++..+++.+.   ......|++++.|.+.+....||+...  ..+...+  .
T Consensus         1 Di~fvlD~S~Sm~~------~~~~~~k~~~~~~i~~~~---~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~~~   71 (177)
T pfam00092         1 DIVFLLDGSGSIGE------ANFEKVKEFIKKLVENLD---IGPDGTRVGLVQYSSDVTTEFSLNDYKSKDDLLSAVLRN   71 (177)
T ss_pred             CEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHC---CCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             98999968799886------889999999999999836---588752899999458458996178868999999998643


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             01568874564237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r  246 RLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       246 ~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                      ....+|+|++..|+..+.+.+...       ....++.+|++||+|||.++.+........   ..+++.||++|+||+|
T Consensus        72 ~~~~~g~t~~~~al~~a~~~~~~~-------~~~r~~~~k~vvllTDG~~~~~~~~~~~~~---~~~~~~gI~v~~vG~g  141 (177)
T pfam00092        72 IYYLGGGTNTGKALKYALENLFRS-------AGSRPNAPKVVILLTDGKSNDGGLVPAAAA---ALRRKVGIIVFGVGVG  141 (177)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHC-------CCCCCCCEEEEEEEECCCCCCCCCCHHHHH---HHHHHCCCEEEEEECC
T ss_conf             157899565999999999998635-------478878726899983698788864699999---9999789589999747


Q ss_pred             CCCCHHHHHHHCC----CCEEEEECCHHHHHHHHHHH
Q ss_conf             8642798998338----98089828989999999999
Q gi|254780833|r  326 AEAADQFLKNCAS----PDRFYSVQNSRKLHDAFLRI  358 (371)
Q Consensus       326 ~~~~~~~l~~cAs----~~~~y~~~~~~~L~~af~~I  358 (371)
                       +.+...|+.+|+    .+++|.+.+.++|.+.++.|
T Consensus       142 -~~~~~~L~~ia~~~~~~~~~~~~~~~~~l~~~~~~i  177 (177)
T pfam00092       142 -DVDEEELRLIASEPCSEGHVFYVTDFDALSDIQEEL  177 (177)
T ss_pred             -CCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf             -448999999968999898599958989999999619


No 15 
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.79  E-value=3.6e-17  Score=122.04  Aligned_cols=158  Identities=28%  Similarity=0.429  Sum_probs=124.3

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCC--CCCHHHHHHHHH
Q ss_conf             740699852763115667872148989999987500233555531104798788636741781666--558789999974
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPL--AWGVQHIQEKIN  245 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l--t~~~~~~~~~i~  245 (371)
                      ++|+++++|.|+||..      .+++.+++++..+++.+...+   ...+++++.|++.+....|+  ..+...+...|+
T Consensus         1 ~~di~~vvD~S~SM~~------~~~~~~k~~~~~~i~~l~~~~---~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~   71 (177)
T smart00327        1 PLDVVFLLDGSGSMGP------NRFEKAKEFVLKLVEQLDIGP---DGDRVGLVTFSDDATVLFPLNDSRSKDALLEALA   71 (177)
T ss_pred             CCEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHCCC---CCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHH
T ss_conf             9489999928899882------899999999999999864179---9878999996372689976888689999999997


Q ss_pred             CCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             0156--88745642378899998742110123467776661699998404588888897899999999997898799999
Q gi|254780833|r  246 RLIF--GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG  323 (371)
Q Consensus       246 ~l~~--~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg  323 (371)
                      .+.+  +|+|++..++.++.+.+......      ..+..+|++|++|||.++.+    .........+++.||+||+||
T Consensus        72 ~l~~~~~g~t~~~~al~~a~~~~~~~~~~------~~~~~~~~iil~TDG~~~~~----~~~~~~~~~~~~~~v~i~~ig  141 (177)
T smart00327       72 SLSYKLGGGTNLGAALQYALENLFSKSAG------SRRGAPKVLILITDGESNDG----GDLLKAAKELKRSGVKVFVVG  141 (177)
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHHCC------CCCCCCEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEEEEEE
T ss_conf             14155788776428999999999766503------77887428999805887872----529999999986794899999


Q ss_pred             ECCCCCHHHHHHHCC--CCEEEE
Q ss_conf             418642798998338--980898
Q gi|254780833|r  324 VQAEAADQFLKNCAS--PDRFYS  344 (371)
Q Consensus       324 ~~~~~~~~~l~~cAs--~~~~y~  344 (371)
                      +|.+.+...|+.+|+  ++.|+.
T Consensus       142 ~g~~~~~~~l~~ia~~~~~~~~~  164 (177)
T smart00327      142 VGNDVDEEELKKLASAPGGVYVF  164 (177)
T ss_pred             ECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             58847999999998489965999


No 16 
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.78  E-value=1.7e-17  Score=124.03  Aligned_cols=166  Identities=24%  Similarity=0.358  Sum_probs=127.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHC
Q ss_conf             4069985276311566787214898999998750023355553110479878863674178166655--87899999740
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINR  246 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~  246 (371)
                      +|++|++|.|+|++.      +.....++.+..+++.+...   ...+|+|++.|+..+....+|..  +...+...++.
T Consensus         1 lDl~fllD~S~Sv~~------~~F~~~k~fi~~lv~~f~i~---~~~~rvglv~ys~~~~~~~~l~~~~~~~~~~~~i~~   71 (177)
T cd01469           1 MDIVFVLDGSGSIYP------DDFQKVKNFLSTVMKKLDIG---PTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKH   71 (177)
T ss_pred             CCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             909999968899998------99999999999999866769---987489999936824999823556778999999862


Q ss_pred             CC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             15-68874564237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r  247 LI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       247 l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                      +. .+|+|++..|+.++.+.++....      ...++..|++|++|||..+++.    ......+.+|+.||+||+||+|
T Consensus        72 i~~~~g~t~t~~AL~~a~~~~f~~~~------g~R~~~~kv~ivlTDG~s~d~~----~~~~~~~~lk~~gv~vf~VGvG  141 (177)
T cd01469          72 ISQLLGLTNTATAIQYVVTELFSESN------GARKDATKVLVVITDGESHDDP----LLKDVIPQAEREGIIRYAIGVG  141 (177)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCCC----CHHHHHHHHHHCCEEEEEEEEC
T ss_conf             30368975252799999998536455------8867871699999789867750----1499999999799089999955


Q ss_pred             CCC----CHHHHHHHCC-C--CEEEEECCHHHHHH
Q ss_conf             864----2798998338-9--80898289899999
Q gi|254780833|r  326 AEA----ADQFLKNCAS-P--DRFYSVQNSRKLHD  353 (371)
Q Consensus       326 ~~~----~~~~l~~cAs-~--~~~y~~~~~~~L~~  353 (371)
                      ...    +...|+.+|| |  .|.|.+++.++|++
T Consensus       142 ~~~~~~~~~~eL~~iAs~P~~~hvf~~~~f~~L~~  176 (177)
T cd01469         142 GHFQRENSREELKTIASKPPEEHFFNVTDFAALKD  176 (177)
T ss_pred             CCCCCCCCHHHHHHHHCCCCHHCEEEECCHHHHCC
T ss_conf             51467451999999967985871998379777646


No 17 
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.78  E-value=2e-17  Score=123.51  Aligned_cols=150  Identities=25%  Similarity=0.402  Sum_probs=118.9

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHC
Q ss_conf             4069985276311566787214898999998750023355553110479878863674178166655--87899999740
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINR  246 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~  246 (371)
                      +|++|++|.|+||..      ++++.+++++..+++.+...+   ...|++++.|++.+....||+.  +...+...|+.
T Consensus         1 ~DivfvlD~S~Sm~~------~~~~~~k~~i~~~i~~~~~~~---~~~rv~lv~fs~~~~~~~~l~~~~~~~~l~~~i~~   71 (161)
T cd01450           1 LDIVFLLDGSESVGP------ENFEKVKDFIEKLVEKLDIGP---DKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKN   71 (161)
T ss_pred             CEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCCC---CCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             969999979899885------899999999999999705688---78589999955731687146564669999999984


Q ss_pred             CCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             1568--87456423788999987421101234677766616999984045888888978999999999978987999994
Q gi|254780833|r  247 LIFG--STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV  324 (371)
Q Consensus       247 l~~~--g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~  324 (371)
                      +...  ++|++..|+.++.+.+....       ...++.+|++||+|||.++.+.    .....+..+|+.||+||+||+
T Consensus        72 l~~~~~~~t~~~~AL~~~~~~~~~~~-------~~r~~~~kvivllTDG~~~~~~----~~~~~a~~lk~~gi~v~~vgi  140 (161)
T cd01450          72 LKYLGGGGTNTGKALQYALEQLFSES-------NARENVPKVIIVLTDGRSDDGG----DPKEAAAKLKDEGIKVFVVGV  140 (161)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCEEEEEEECCCCCCCC----CHHHHHHHHHHCCCEEEEEEE
T ss_conf             21368998548999999999986144-------6666675499998258878874----799999999988998999982


Q ss_pred             CCCCCHHHHHHHCCC
Q ss_conf             186427989983389
Q gi|254780833|r  325 QAEAADQFLKNCASP  339 (371)
Q Consensus       325 ~~~~~~~~l~~cAs~  339 (371)
                      |. .+...|+.+|+.
T Consensus       141 G~-~~~~~L~~iA~~  154 (161)
T cd01450         141 GP-ADEEELREIASC  154 (161)
T ss_pred             CC-CCHHHHHHHHCC
T ss_conf             64-899999999779


No 18 
>cd01473 vWA_CTRP CTRP for  CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60  amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.78  E-value=7.9e-17  Score=119.94  Aligned_cols=178  Identities=20%  Similarity=0.225  Sum_probs=130.3

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC----CCHHHHHHHH
Q ss_conf             406998527631156678721489899999875002335555311047987886367417816665----5878999997
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA----WGVQHIQEKI  244 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt----~~~~~~~~~i  244 (371)
                      .|++|++|.|+|.+...+     -+..++.+..+++.++   ..++.+|+|++.|+..+....++.    .+...+..+|
T Consensus         1 ~DivFllD~S~SIg~~nf-----~~~v~~F~~~lv~~f~---Ig~~~~rvgvv~yS~~~~~~~~f~~~~~~~k~~~l~~i   72 (192)
T cd01473           1 YDLTLILDESASIGYSNW-----RKDVIPFTEKIINNLN---ISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKI   72 (192)
T ss_pred             CCEEEEEECCCCCCHHHH-----HHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             978999938998666776-----9999999999998756---59896199999955887401323554434899999999


Q ss_pred             HCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             4015----688745642378899998742110123467776661699998404588888897899999999997898799
Q gi|254780833|r  245 NRLI----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       245 ~~l~----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      +.+.    .+|+|++..|+..+.+.+...       ....++..|++|++|||..+..+.  .........+|++||+||
T Consensus        73 ~~l~~~~~~gg~T~tg~AL~~~~~~~~~~-------~g~R~~vpkv~IvlTDG~s~~~~~--~~~~~~a~~lr~~gV~i~  143 (192)
T cd01473          73 NDLKNSYRSGGETYIVEALKYGLKNYTKH-------GNRRKDAPKVTMLFTDGNDTSASK--KELQDISLLYKEENVKLL  143 (192)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCC-------CCCCCCCCEEEEEEECCCCCCCCH--HHHHHHHHHHHHCCCEEE
T ss_conf             99873146898247999999999986346-------788889974999995699887316--789999999998797899


Q ss_pred             EEEECCCCCHHHHHHHCC-C--CE---EEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             999418642798998338-9--80---89828989999999999996400
Q gi|254780833|r  321 AIGVQAEAADQFLKNCAS-P--DR---FYSVQNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       321 tIg~~~~~~~~~l~~cAs-~--~~---~y~~~~~~~L~~af~~I~~~i~~  364 (371)
                      +||+|. .+...|+.+|+ +  +.   +|...+.++|....+.|.+++..
T Consensus       144 avGVg~-~~~~eL~~iag~~~~~~~c~~~~~~~fd~l~~i~~~l~~~vC~  192 (192)
T cd01473         144 VVGVGA-ASENKLKLLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKICD  192 (192)
T ss_pred             EEEECC-CCHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             998063-7999999986999889977579947978999999999997249


No 19 
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.77  E-value=5.7e-17  Score=120.82  Aligned_cols=169  Identities=17%  Similarity=0.218  Sum_probs=124.0

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC----HHH---HH
Q ss_conf             40699852763115667872148989999987500233555531104798788636741781666558----789---99
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG----VQH---IQ  241 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~----~~~---~~  241 (371)
                      +|++|++|.|+|++..  ++   .+..++.+..+++.++   ..++.+|+|++.|+..+....+|...    ...   +.
T Consensus         1 lDlvFllD~S~SVg~~--n~---f~~~k~F~~~lv~~f~---I~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~~~~~~~~   72 (186)
T cd01471           1 LDLYLLVDGSGSIGYS--NW---VTHVVPFLHTFVQNLN---ISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAI   72 (186)
T ss_pred             CEEEEEEECCCCCCCC--CH---HHHHHHHHHHHHHHCC---CCCCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf             9099999488988861--31---8999999999999749---69884499999954870599875775544656799999


Q ss_pred             HHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             9974015-688745642378899998742110123467776661699998404588888897899999999997898799
Q gi|254780833|r  242 EKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       242 ~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      ..+..+. .+|+|++..|+..+.+.++...       ...++.+|++||+|||..++..    .....++.+|+.||+||
T Consensus        73 ~~i~~~~y~gg~T~Tg~AL~~a~~~~f~~~-------g~R~~vpkv~illTDG~s~d~~----~~~~~a~~Lr~~GV~if  141 (186)
T cd01471          73 RALLSLYYPNGSTNTTSALLVVEKHLFDTR-------GNRENAPQLVIIMTDGIPDSKF----RTLKEARKLRERGVIIA  141 (186)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCCEEEEEEECCCCCCCC----HHHHHHHHHHHCCCEEE
T ss_conf             999837778996779999999999721146-------8899998599999069877852----58999999998899999


Q ss_pred             EEEECCCCCHHHHHHHCC-CCE-----EEEECCHHHHHHHHH
Q ss_conf             999418642798998338-980-----898289899999999
Q gi|254780833|r  321 AIGVQAEAADQFLKNCAS-PDR-----FYSVQNSRKLHDAFL  356 (371)
Q Consensus       321 tIg~~~~~~~~~l~~cAs-~~~-----~y~~~~~~~L~~af~  356 (371)
                      +||+|...+...|+.+|+ +..     .|..++-++|+.+-+
T Consensus       142 avGVG~~v~~~eL~~Iag~~~~~~~c~~~~~~~~~~l~~~~~  183 (186)
T cd01471         142 VLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEVQNVIK  183 (186)
T ss_pred             EEECCCCCCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH
T ss_conf             998343249999999709998889986575178888874775


No 20 
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.77  E-value=1.8e-16  Score=117.84  Aligned_cols=181  Identities=22%  Similarity=0.276  Sum_probs=131.9

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHH
Q ss_conf             13467406998527631156678721489899999875002335555311047987886367417816665587899999
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEK  243 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~  243 (371)
                      +...|+.+.+++|.|+||..       ++..+++++..++.....     ...++.++.|+.......++|.+...+..+
T Consensus        49 ~~~~P~sv~l~~D~S~s~~~-------~~~~~~~a~~~fl~~~l~-----p~d~~avv~F~~~~~l~~~fT~d~~~l~~a  116 (296)
T TIGR03436        49 ETDLPLTVGLVIDTSGSMFN-------DLARARAAAIRFLKTVLR-----PNDEVFVVTFSTQLRLLQDFTSDPRLLEAA  116 (296)
T ss_pred             CCCCCCEEEEEEECCCCCHH-------HHHHHHHHHHHHHHHHCC-----CCCEEEEEEECCCEEECCCCCCCHHHHHHH
T ss_conf             78898469999978999145-------399999999999986368-----886799999489545727898899999999


Q ss_pred             HHCCCC---------------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             740156---------------88745642378899998742110123467776661699998404588888897899999
Q gi|254780833|r  244 INRLIF---------------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFY  308 (371)
Q Consensus       244 i~~l~~---------------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~  308 (371)
                      |+.+.+               .|+|.++.++..+...+...       ...+...+|+||++|||.++.......+..  
T Consensus       117 l~~l~~~~~~~~~~~~~~~~~~g~tal~dAi~laa~~~~~~-------~~~~~~gRK~li~iSdG~d~~s~~~~~~~~--  187 (296)
T TIGR03436       117 LNKLKPPLRTDYNSSGAFVADAGGTALYDAITLAALQQLAN-------ALAGIPGRKALIVISDGEDNSSRDTLERAI--  187 (296)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------HCCCCCCCEEEEEEECCCCCCCCCCHHHHH--
T ss_conf             98615676543333453235787410278899999999875-------404798867999992698863304899999--


Q ss_pred             HHHHHHCCCEEEEEEECCC-------------CCHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHHHEEE
Q ss_conf             9999978987999994186-------------4279899833--898089828989999999999996400078
Q gi|254780833|r  309 CNEAKRRGAIVYAIGVQAE-------------AADQFLKNCA--SPDRFYSVQNSRKLHDAFLRIGKEMVKQRI  367 (371)
Q Consensus       309 c~~~k~~gi~i~tIg~~~~-------------~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~I~~~i~~~~i  367 (371)
                       +.++..+|.||+|++...             .....|+.+|  +||++|..+ ..+|.++|+.|.+++.++.+
T Consensus       188 -~~a~~a~v~IY~I~~~~~~~~~~~~~~~~~~~~~~~L~~lA~~TGG~~f~~~-~~dl~~~~~~i~~~lr~qY~  259 (296)
T TIGR03436       188 -EAAQRADVLIYSIDARGLRAPDLGAGAKAGLSGPETLERLAAETGGRAFYVN-SNDIDEAFAQIAEELRSQYV  259 (296)
T ss_pred             -HHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCC-CCCHHHHHHHHHHHHHHEEE
T ss_conf             -9999849779995467656656444445567627999999997399675547-41089999999998752389


No 21 
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins.  This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via  the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.77  E-value=3.6e-17  Score=122.01  Aligned_cols=156  Identities=23%  Similarity=0.387  Sum_probs=121.7

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674178166655--878999997401
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINRL  247 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~l  247 (371)
                      |++|++|.|+||..      ...+..++.+..+++.+...   ....|++++.|+..+....|+..  +...+...|+.+
T Consensus         2 Di~fvlD~S~Sv~~------~~f~~~k~fi~~li~~~~i~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~l~~~i~~i   72 (164)
T cd01472           2 DIVFLVDGSESIGL------SNFNLVKDFVKRVVERLDIG---PDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNL   72 (164)
T ss_pred             CEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             79999979799887------99999999999999964768---8860899998247415874454669889999999861


Q ss_pred             CC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             56-88745642378899998742110123467776661699998404588888897899999999997898799999418
Q gi|254780833|r  248 IF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       248 ~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .. +|+|++..|++++.+.+....      ....++.+|++||+|||..++      ........+|+.||+||+||+| 
T Consensus        73 ~~~~g~t~~~~AL~~~~~~~~~~~------~~~r~~~~kvvvllTDG~s~~------~~~~~a~~lr~~Gi~v~~VGig-  139 (164)
T cd01472          73 RYIGGGTNTGKALKYVRENLFTEA------SGSREGVPKVLVVITDGKSQD------DVEEPAVELKQAGIEVFAVGVK-  139 (164)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHCCC------CCCCCCCEEEEEEEECCCCCC------HHHHHHHHHHHCCCEEEEEECC-
T ss_conf             166897529999999999863535------787678515999983799864------0889999999889889999788-


Q ss_pred             CCCHHHHHHHCC-C--CEEEEECC
Q ss_conf             642798998338-9--80898289
Q gi|254780833|r  327 EAADQFLKNCAS-P--DRFYSVQN  347 (371)
Q Consensus       327 ~~~~~~l~~cAs-~--~~~y~~~~  347 (371)
                      +.+...|+.+|| |  .|+|.+.+
T Consensus       140 ~~~~~~L~~iAs~p~~~~~~~~~~  163 (164)
T cd01472         140 NADEEELKQIASDPKELYVFNVAD  163 (164)
T ss_pred             CCCHHHHHHHHCCCCHHEEEECCC
T ss_conf             479999999967993783896588


No 22 
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.73  E-value=4.2e-16  Score=115.56  Aligned_cols=158  Identities=18%  Similarity=0.296  Sum_probs=121.6

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674178166655--878999997401
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINRL  247 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~l  247 (371)
                      |++|++|.|+|++.      ...+..++.+..+++.++..   .+.+|+|++.|++.+....+|..  +...+..+|+.+
T Consensus         2 DlvFllD~S~si~~------~~F~~~k~Fv~~lv~~f~i~---~~~trVgvi~ys~~~~~~f~l~~~~~~~~l~~~I~~i   72 (165)
T cd01481           2 DIVFLIDGSDNVGS------GNFPAIRDFIERIVQSLDVG---PDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRL   72 (165)
T ss_pred             CEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             78999968899898------99999999999999960468---8862788999868647999767768999999999841


Q ss_pred             CCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             56887--4564237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r  248 IFGST--TKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       248 ~~~g~--T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                      .+.++  |++..|+.++.+.++...    +..+..+..+|++|++|||..++      ........+|+.||+||+||++
T Consensus        73 ~~~~g~~t~tg~AL~~a~~~~f~~~----~g~R~r~~v~kvlvviTdG~s~d------~~~~~a~~lr~~gV~i~aVGvg  142 (165)
T cd01481          73 RLRGGSQLNTGSALDYVVKNLFTKS----AGSRIEEGVPQFLVLITGGKSQD------DVERPAVALKRAGIVPFAIGAR  142 (165)
T ss_pred             HCCCCCCEEHHHHHHHHHHHHCCCC----CCCCCCCCCCEEEEEEECCCCCC------HHHHHHHHHHHCCCEEEEEECC
T ss_conf             0458984369999999999716756----78875579986999984898853------7899999999889789999689


Q ss_pred             CCCCHHHHHHHCC-CCEEEEECC
Q ss_conf             8642798998338-980898289
Q gi|254780833|r  326 AEAADQFLKNCAS-PDRFYSVQN  347 (371)
Q Consensus       326 ~~~~~~~l~~cAs-~~~~y~~~~  347 (371)
                       +.+...|+.+|| |.|.|.+++
T Consensus       143 -~~~~~eL~~IAs~p~~vf~~~~  164 (165)
T cd01481         143 -NADLAELQQIAFDPSFVFQVSD  164 (165)
T ss_pred             -CCCHHHHHHHHCCCCCEEECCC
T ss_conf             -7999999998589877697389


No 23 
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727   This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=99.72  E-value=7.1e-17  Score=120.23  Aligned_cols=171  Identities=26%  Similarity=0.331  Sum_probs=119.9

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHH-HHHHHH-HCC-
Q ss_conf             69985276311566787214898999998750023355553110479878863674178166655878-999997-401-
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQ-HIQEKI-NRL-  247 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~-~~~~~i-~~l-  247 (371)
                      |++|+|.||||...     +|+....++...+|-+.-.     ...-+|++.|.+.+...-.|..-.+ ..++.| ..| 
T Consensus       310 VCLVLDKSGSM~~~-----dRL~RmNQAa~lFL~Q~vE-----~gs~VGmV~FDS~A~i~n~L~~I~s~~~~~~l~a~LP  379 (874)
T TIGR00868       310 VCLVLDKSGSMTKE-----DRLKRMNQAAKLFLLQIVE-----KGSWVGMVTFDSAAEIKNELIKITSSDERDALTANLP  379 (874)
T ss_pred             EEEEECCCCCCCCC-----CHHHHHHHHHHHHEEEEEE-----CCCEEEEEECCCEEEEEEEEEEECCHHHHHHHHHHCC
T ss_conf             99986344337988-----5334555566430123554-----1526776630644576542077526689989987077


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             -5688745642378899998742110123467776661699998404588888897899999999997898799999418
Q gi|254780833|r  248 -IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       248 -~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~  326 (371)
                       .+.|||.+=.|++.|++.+....+...+    +     =|||||||++|.-+..       .++-|+.|+-||||++|.
T Consensus       380 ~~a~GGTSIC~Gl~~aFq~I~~~~~~t~G----S-----Ei~LLTDGEDN~i~sC-------~~eVkqsGaIiHtiALGp  443 (874)
T TIGR00868       380 TEASGGTSICSGLKAAFQVIKKSDQSTDG----S-----EIVLLTDGEDNTISSC-------IEEVKQSGAIIHTIALGP  443 (874)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCC----C-----EEEEEECCCCCCEEEC-------HHHHHCCCEEEEEEECCH
T ss_conf             87876803656676665433312666675----3-----6998306875762313-------055410980899850784


Q ss_pred             CCCHHH--HHHHCCCCEEEEE--CCHHHHHHHHHHHHH---HHHHEEE
Q ss_conf             642798--9983389808982--898999999999999---6400078
Q gi|254780833|r  327 EAADQF--LKNCASPDRFYSV--QNSRKLHDAFLRIGK---EMVKQRI  367 (371)
Q Consensus       327 ~~~~~~--l~~cAs~~~~y~~--~~~~~L~~af~~I~~---~i~~~~i  367 (371)
                      .+++++  |.++.+|-+||-.  .+-+.|.+||..|..   .++|+.|
T Consensus       444 sAa~ele~lS~mTGG~~fYa~D~~~~NgLidAFg~lsS~~~~~sQ~~l  491 (874)
T TIGR00868       444 SAAKELEELSDMTGGLRFYASDEADNNGLIDAFGALSSGNGSVSQQSL  491 (874)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             589999998733387113341333314145466422147612555555


No 24 
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.72  E-value=8e-16  Score=113.89  Aligned_cols=156  Identities=23%  Similarity=0.383  Sum_probs=119.1

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674178166655--878999997401
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINRL  247 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~l  247 (371)
                      |++|++|.|+|++..      ..+..++.+..+++.++.   ....+|++++.|+..+....+|..  +...+...|+.+
T Consensus         2 DlvfllD~S~Si~~~------~f~~~k~fi~~lv~~f~i---~~~~~rvgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i   72 (164)
T cd01482           2 DIVFLVDGSWSIGRS------NFNLVRSFLSSVVEAFEI---GPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNL   72 (164)
T ss_pred             CEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf             799999698998889------999999999999996476---88862899999447512787343469989999998640


Q ss_pred             CC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             56-88745642378899998742110123467776661699998404588888897899999999997898799999418
Q gi|254780833|r  248 IF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       248 ~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .. +|+|++..|++++.+.++...      ....++.+|++|++|||..++      ........+|+.||+||+||++ 
T Consensus        73 ~~~~g~t~~~~AL~~~~~~~f~~~------~g~R~~~~kvlvliTDG~s~d------~~~~~a~~lr~~gv~i~~VGVg-  139 (164)
T cd01482          73 PYKGGNTRTGKALTHVREKNFTPD------AGARPGVPKVVILITDGKSQD------DVELPARVLRNLGVNVFAVGVK-  139 (164)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCHH------CCCCCCCCEEEEEECCCCCCC------HHHHHHHHHHHCCCEEEEEECC-
T ss_conf             266899728999999999861500------289888860799960798843------3899999999889389999788-


Q ss_pred             CCCHHHHHHHCC-C--CEEEEECC
Q ss_conf             642798998338-9--80898289
Q gi|254780833|r  327 EAADQFLKNCAS-P--DRFYSVQN  347 (371)
Q Consensus       327 ~~~~~~l~~cAs-~--~~~y~~~~  347 (371)
                      +.+...|+.+|| |  .|+|.+++
T Consensus       140 ~~~~~eL~~IAs~P~~~hvf~~~~  163 (164)
T cd01482         140 DADESELKMIASKPSETHVFNVAD  163 (164)
T ss_pred             CCCHHHHHHHHCCCCHHCEEECCC
T ss_conf             378999999968985661797479


No 25 
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.72  E-value=4.4e-16  Score=115.44  Aligned_cols=150  Identities=30%  Similarity=0.408  Sum_probs=116.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHC
Q ss_conf             4069985276311566787214898999998750023355553110479878863674178166655--87899999740
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINR  246 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~  246 (371)
                      .|++||+|.|+||..      .+++.+++++..+++.+...   ....+++++.|...+....+++.  +...+...++.
T Consensus         1 ~div~vlD~S~Sm~~------~~~~~~k~~~~~~~~~l~~~---~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~~   71 (161)
T cd00198           1 ADIVFLLDVSGSMGG------EKLDKAKEALKALVSSLSAS---PPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDA   71 (161)
T ss_pred             CEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             909999918899880------79999999999999987655---999889999937951488147412579999997751


Q ss_pred             CC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             15--6887456423788999987421101234677766616999984045888888978999999999978987999994
Q gi|254780833|r  247 LI--FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV  324 (371)
Q Consensus       247 l~--~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~  324 (371)
                      +.  ..|+|++..++..+.+.+....         ....+|++||+|||.++.+.   .........+|+.||.||+||+
T Consensus        72 ~~~~~~g~t~~~~al~~a~~~~~~~~---------~~~~~~~iiliTDG~~~~~~---~~~~~~~~~~~~~~v~i~~igi  139 (161)
T cd00198          72 LKKGLGGGTNIGAALRLALELLKSAK---------RPNARRVIILLTDGEPNDGP---ELLAEAARELRKLGITVYTIGI  139 (161)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEECCCCCCCCH---HHHHHHHHHHHHCCCEEEEEEE
T ss_conf             35689998389999999999987532---------55565179996789989873---6799999999977998999996


Q ss_pred             CCCCCHHHHHHHCCC
Q ss_conf             186427989983389
Q gi|254780833|r  325 QAEAADQFLKNCASP  339 (371)
Q Consensus       325 ~~~~~~~~l~~cAs~  339 (371)
                      |.+.+.+.|+.+|+.
T Consensus       140 g~~~~~~~l~~ia~~  154 (161)
T cd00198         140 GDDANEDELKEIADK  154 (161)
T ss_pred             CHHHCHHHHHHHHHC
T ss_conf             611199999999838


No 26 
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in  cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest  any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.69  E-value=2.5e-15  Score=110.89  Aligned_cols=153  Identities=22%  Similarity=0.325  Sum_probs=111.0

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE--CCCC--CCHHHHHHHH
Q ss_conf             40699852763115667872148989999987500233555531104798788636741781--6665--5878999997
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT--FPLA--WGVQHIQEKI  244 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~lt--~~~~~~~~~i  244 (371)
                      +|++|++|.|+|+...       ....++.+..+++.+.   ...+.+|++++.|+......  .++.  .+..++...|
T Consensus         1 lDl~fllD~S~Sv~~~-------f~~~k~F~~~lv~~f~---i~~~~~rVgvv~ys~~~~~~i~f~l~~~~~~~~l~~~I   70 (163)
T cd01476           1 LDLLFVLDSSGSVRGK-------FEKYKKYIERIVEGLE---IGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKV   70 (163)
T ss_pred             CCEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHC---CCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             9299999188886673-------9999999999999614---68885389999966987078887577779999999999


Q ss_pred             HCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf             40156-88745642378899998742110123467776661699998404588888897899999999997-89879999
Q gi|254780833|r  245 NRLIF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKR-RGAIVYAI  322 (371)
Q Consensus       245 ~~l~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~-~gi~i~tI  322 (371)
                      +.+.. +|+|++..|+..+.+.+.+..       ...++.+|++|++|||..+++      .......+|+ .||+||+|
T Consensus        71 ~~i~~~~g~T~tg~AL~~a~~~~~~~~-------g~R~~~~kv~vviTDG~s~d~------~~~~a~~lr~~~gv~v~av  137 (163)
T cd01476          71 DNLRFIGGTTATGAAIEVALQQLDPSE-------GRREGIPKVVVVLTDGRSHDD------PEKQARILRAVPNIETFAV  137 (163)
T ss_pred             HHEECCCCCCCHHHHHHHHHHHHHHHC-------CCCCCCEEEEEEEECCCCCCC------HHHHHHHHHHHCCCEEEEE
T ss_conf             752036898548999999999721420-------678996169999818987664------8899999997099899999


Q ss_pred             EECC--CCCHHHHHHHCC-CCEEEE
Q ss_conf             9418--642798998338-980898
Q gi|254780833|r  323 GVQA--EAADQFLKNCAS-PDRFYS  344 (371)
Q Consensus       323 g~~~--~~~~~~l~~cAs-~~~~y~  344 (371)
                      |+|.  +.+...|+.+|+ ++|.|.
T Consensus       138 gVG~~~~~d~~eL~~Ia~~~~~Vft  162 (163)
T cd01476         138 GTGDPGTVDTEELHSITGNEDHIFT  162 (163)
T ss_pred             EECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             8388650159999986499725457


No 27 
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.64  E-value=1.9e-14  Score=105.63  Aligned_cols=144  Identities=21%  Similarity=0.191  Sum_probs=107.1

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE-ECCCCCCHHHHHHHHHCCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674178-1666558789999974015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ-TFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~~~~~~i~~l~  248 (371)
                      .+++++|.||||..      .++..++.++..++......+     .+++++.|++.... ..+.+.+.......+..+.
T Consensus         2 pvV~vlD~SGSM~G------~~~~~ak~~~~~l~~~l~~~~-----~~~~lv~F~~~~~~~~~~~~~~~~~~~~~i~~~~   70 (152)
T cd01462           2 PVILLVDQSGSMYG------APEEVAKAVALALLRIALAEN-----RDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQ   70 (152)
T ss_pred             CEEEEEECCCCCCC------CHHHHHHHHHHHHHHHHHHCC-----CEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999979999898------069999999999999732339-----8099999168735771587645999999997253


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             68874564237889999874211012346777666169999840458888889789999999999789879999941864
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEA  328 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~  328 (371)
                      ++|||++..++..+...+...           ...+..|||+|||+....+   ......+..+++.++++|++++|.+.
T Consensus        71 ~~GGT~i~~aL~~A~~~l~~~-----------~~~~~~IvlITDG~~~~~~---~~~~~~~~~~~~~~~r~~~~~iG~~~  136 (152)
T cd01462          71 LGGGTDINKALRYALELIERR-----------DPRKADIVLITDGYEGGVS---DELLREVELKRSRVARFVALALGDHG  136 (152)
T ss_pred             CCCCCCHHHHHHHHHHHHHCC-----------CCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCEEEEEEEECCCC
T ss_conf             689865799999999987425-----------7656469998267567983---99999999998389199999989998


Q ss_pred             CHHHHHHHCC
Q ss_conf             2798998338
Q gi|254780833|r  329 ADQFLKNCAS  338 (371)
Q Consensus       329 ~~~~l~~cAs  338 (371)
                      +..+++..+.
T Consensus       137 ~p~~~~~~~~  146 (152)
T cd01462         137 NPGYDRISAE  146 (152)
T ss_pred             CCHHHHHHHH
T ss_conf             8278787666


No 28 
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.59  E-value=1.3e-13  Score=100.52  Aligned_cols=171  Identities=19%  Similarity=0.260  Sum_probs=138.1

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEC-CCCEEECCCCCCHHHHHH
Q ss_conf             1346740699852763115667872148989999987500233555531104798788636-741781666558789999
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFS-SKIVQTFPLAWGVQHIQE  242 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~lt~~~~~~~~  242 (371)
                      ..+....++||+|.||||...     .|+..++.++..++...     +....+++++.|. .++....|.|.+...+..
T Consensus        74 ~~r~g~lvvfvVDASgSM~~~-----~Rm~aaKG~~~~lL~dA-----Yq~RdkvavI~F~G~~A~lll~pT~sv~~~~~  143 (261)
T COG1240          74 EGRAGNLIVFVVDASGSMAAR-----RRMAAAKGAALSLLRDA-----YQRRDKVAVIAFRGEKAELLLPPTSSVELAER  143 (261)
T ss_pred             CCCCCCCEEEEEECCCCCHHH-----HHHHHHHHHHHHHHHHH-----HHCCCEEEEEEECCCCCEEEECCCCCHHHHHH
T ss_conf             047677489999476542057-----89999999999999999-----97035489999637765388478653999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCH--HHHHHHHHHHHHCCCEEE
Q ss_conf             974015688745642378899998742110123467776661699998404588888897--899999999997898799
Q gi|254780833|r  243 KINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDN--KESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       243 ~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~--~~~~~~c~~~k~~gi~i~  320 (371)
                      .+..+.++|.|.+..|+..+++.+....       ..+++...++|++|||..|.+....  .....+|..+...|+.+-
T Consensus       144 ~L~~l~~GG~TPL~~aL~~a~ev~~r~~-------r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~l  216 (261)
T COG1240         144 ALERLPTGGKTPLADALRQAYEVLAREK-------RRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLL  216 (261)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             9983899998843999999999999751-------048876538999737965888898657799999999852688479


Q ss_pred             EEEECCCCC-HHHHHHHC--CCCEEEEECCHHHH
Q ss_conf             999418642-79899833--89808982898999
Q gi|254780833|r  321 AIGVQAEAA-DQFLKNCA--SPDRFYSVQNSRKL  351 (371)
Q Consensus       321 tIg~~~~~~-~~~l~~cA--s~~~~y~~~~~~~L  351 (371)
                      +|.++.+.- -.+.+.+|  ++|.||+.++..+.
T Consensus       217 vid~e~~~~~~g~~~~iA~~~Gg~~~~L~~l~~~  250 (261)
T COG1240         217 VIDTEGSEVRLGLAEEIARASGGEYYHLDDLSDD  250 (261)
T ss_pred             EEECCCCCCCCCHHHHHHHHHCCEEEECCCCCCH
T ss_conf             9955785233447999999739907865556404


No 29 
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.51  E-value=6.4e-13  Score=96.33  Aligned_cols=182  Identities=20%  Similarity=0.263  Sum_probs=137.3

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHH-HHCCC
Q ss_conf             06998527631156678721489899999875002335555311047987886367417816665587899999-74015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEK-INRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~-i~~l~  248 (371)
                      -|++++|.||||..      ++|+.++..++.+.+.+.+.+..-..+.+++++|...+....|++.-    .++ -..|.
T Consensus         5 P~~lllDtSgSM~G------e~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~----~nF~~p~L~   74 (207)
T COG4245           5 PCYLLLDTSGSMIG------EPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDA----ANFNPPILT   74 (207)
T ss_pred             CEEEEEECCCCCCC------CCHHHHHHHHHHHHHHHHHCHHHHHEEEEEEEEECCCCEEEECHHHH----HHCCCCCEE
T ss_conf             88999936754245------61799989999999998748465440578999826850687331557----544887013


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC-
Q ss_conf             6887456423788999987421101234677766616999984045888888978999999999978987999994186-
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE-  327 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~-  327 (371)
                      +.|+|....|+..+..++....+....  ....+++++++|||||++++.   +......-..-+.....|-.+++|.+ 
T Consensus        75 a~GgT~lGaAl~~a~d~Ie~~~~~~~a--~~kgdyrP~vfLiTDG~PtD~---w~~~~~~~~~~~~~~k~v~a~~~G~~~  149 (207)
T COG4245          75 AQGGTPLGAALTLALDMIEERKRKYDA--NGKGDYRPWVFLITDGEPTDD---WQAGAALVFQGERRAKSVAAFSVGVQG  149 (207)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHH---HHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf             699980679999999999877765056--775554417999538996657---776777764033100528999953543


Q ss_pred             CCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHEE
Q ss_conf             427989983389808982898999999999999640007
Q gi|254780833|r  328 AADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEMVKQR  366 (371)
Q Consensus       328 ~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i~~~~  366 (371)
                      ++-..|+++.+.-.-|.-.+..++.+.|+.+...|+.-+
T Consensus       150 ad~~~L~qit~~V~~~~t~d~~~f~~fFkW~SaSisagS  188 (207)
T COG4245         150 ADNKTLNQITEKVRQFLTLDGLQFREFFKWLSASISAGS  188 (207)
T ss_pred             CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             441899998876525234534889999999987751323


No 30 
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role  in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3-  ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.50  E-value=2.5e-12  Score=92.79  Aligned_cols=152  Identities=18%  Similarity=0.357  Sum_probs=105.4

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC--------EEECCCCCC-HHHH
Q ss_conf             0699852763115667872148989999987500233555531104798788636741--------781666558-7899
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI--------VQTFPLAWG-VQHI  240 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--------~~~~~lt~~-~~~~  240 (371)
                      .+.+++|.||||...     .+++.+++++.-+.+.+...     ..+++++.|+...        ....++... ....
T Consensus         2 aV~lLlD~SgSM~~~-----~~i~~a~~a~~~l~~aL~~~-----g~~~~v~gF~s~~~~r~~~~~~~~k~f~e~~~~~~   71 (174)
T cd01454           2 AVTLLLDLSGSMRSD-----RRIDVAKKAAVLLAEALEAC-----GVPHAILGFTTDAGGRERVRWIKIKDFDESLHERA   71 (174)
T ss_pred             EEEEEEECCCCCCCC-----CHHHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHH
T ss_conf             899999898688998-----48999999999999999976-----99569995157889844347893236674211456


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC------CHHHHHHHHHHHHH
Q ss_conf             999740156887456423788999987421101234677766616999984045888888------97899999999997
Q gi|254780833|r  241 QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI------DNKESLFYCNEAKR  314 (371)
Q Consensus       241 ~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~------~~~~~~~~c~~~k~  314 (371)
                      +..|..+.++++|....++.|+...|..           .+..+|++|++|||.|++...      ....+...+..++.
T Consensus        72 ~~~i~~l~~~g~Tr~G~Air~a~~~L~~-----------~~~~rkiliviSDG~P~D~~~~~~~~~~~~D~~~av~e~~~  140 (174)
T cd01454          72 RKRLAALSPGGNTRDGAAIRHAAERLLA-----------RPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARK  140 (174)
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             8888511878989617999999999863-----------97666799998389976677788755389999999999998


Q ss_pred             CCCEEEEEEECCCCC---HHHHHHHCCCCEE
Q ss_conf             898799999418642---7989983389808
Q gi|254780833|r  315 RGAIVYAIGVQAEAA---DQFLKNCASPDRF  342 (371)
Q Consensus       315 ~gi~i~tIg~~~~~~---~~~l~~cAs~~~~  342 (371)
                      .||.+|.|+++.+..   .+.|+.+-+.++|
T Consensus       141 ~GI~~~~i~i~~~~~~~~~~~l~~i~g~~~~  171 (174)
T cd01454         141 LGIEVFGITIDRDATTVDKEYLKNIFGEEGY  171 (174)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHCCCCCE
T ss_conf             7988999998985556699999984287877


No 31 
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.49  E-value=5.7e-12  Score=90.64  Aligned_cols=165  Identities=19%  Similarity=0.253  Sum_probs=117.0

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHH
Q ss_conf             3467406998527631156678721489899999875002---3355553110479878863674178166655--8789
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLD---IIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQH  239 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~  239 (371)
                      .+.=+|+++|+|.|..|...      -+..+...+..++.   .....+.-+..+|+|+++|++.++....|..  ....
T Consensus        16 ~nLWLDVv~VVD~S~~mt~~------gl~~V~~~I~s~f~~~t~iGt~~~~pr~TRVGlVTYn~~AtvvAdLn~~~S~dd   89 (193)
T cd01477          16 KNLWLDIVFVVDNSKGMTQG------GLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDD   89 (193)
T ss_pred             HHEEEEEEEEEECCCCCCCC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHH
T ss_conf             22237899999678765621------099999999999713540357889987338999996787459863454565788


Q ss_pred             HHHHHH----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999974----0156887456423788999987421101234677766616999984045888888978999999999978
Q gi|254780833|r  240 IQEKIN----RLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRR  315 (371)
Q Consensus       240 ~~~~i~----~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~  315 (371)
                      +.+.|.    ........+...|+..+-.+|...      ....+.+++|+||+++-.....+.   ..+..+++.+|..
T Consensus        90 l~~~i~~~l~~vsss~~SyL~~GL~aA~~~l~~~------~~~~R~nykKVVIVyAs~y~~~g~---~dp~pvA~rLK~~  160 (193)
T cd01477          90 LYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAG------KRTSRENYKKVVIVFASDYNDEGS---NDPRPIAARLKST  160 (193)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCCCCEEEEEEECCCCCCCC---CCHHHHHHHHHHC
T ss_conf             9999988751466663127999999999999833------266424862799999502467898---8869999999876


Q ss_pred             CCEEEEEEECCCCCHH---HHHHHCCCCEEEE
Q ss_conf             9879999941864279---8998338980898
Q gi|254780833|r  316 GAIVYAIGVQAEAADQ---FLKNCASPDRFYS  344 (371)
Q Consensus       316 gi~i~tIg~~~~~~~~---~l~~cAs~~~~y~  344 (371)
                      |+.|.||+|+.+.+..   .|.+|||||+-|.
T Consensus       161 Gv~IiTVa~~q~~~~~~~~~L~~IASpg~nFt  192 (193)
T cd01477         161 GIAIITVAFTQDESSNLLDKLGKIASPGMNFT  192 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             97899998268875889998887579988877


No 32 
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion]
Probab=99.42  E-value=2.9e-12  Score=92.42  Aligned_cols=68  Identities=16%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             25788752036871899999999999999999999999999999999999999999986520365302
Q gi|254780833|r    3 FLNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGN   70 (371)
Q Consensus         3 ~~~l~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~ks~Lq~a~DaA~LAaa~~~~~~~~~~   70 (371)
                      .+-++||+|||+|+++|.|||++|||++++++.||++.+++.|.+||+|+|+|+++++..........
T Consensus         9 ~~~~~rF~rdr~Ga~AVeFAlvap~ll~l~~g~ve~~~~~~~~~~l~~a~d~aara~~~~~~~~~~~~   76 (185)
T COG4961           9 RGLLRRFRRDRRGAAAVEFALVAPPLLLLVFGIVEFGIAFLAKQSLQNAADAAARAAARGLTTDAADL   76 (185)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             99999887648768999999999999999999999999999999999999999999985076442025


No 33 
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804   Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous.   Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) .    The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction .   Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=99.30  E-value=1.6e-10  Score=81.91  Aligned_cols=165  Identities=18%  Similarity=0.218  Sum_probs=127.9

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CEEECCCCCCHHHHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674-1781666558789999
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-IVQTFPLAWGVQHIQE  242 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~lt~~~~~~~~  242 (371)
                      +.+.+--|+||+|-||||.-.     .||..++.++..+|...     +-...++++++|... +...+|.|.+....+.
T Consensus       504 ~~r~G~LviFvVDASGSM~ar-----~RM~~~KGavLsLL~DA-----Yq~RDkValI~FrG~~AevlLPPT~sv~~A~r  573 (688)
T TIGR02442       504 EGRAGNLVIFVVDASGSMAAR-----GRMAAAKGAVLSLLRDA-----YQKRDKVALITFRGEEAEVLLPPTSSVELAAR  573 (688)
T ss_pred             HHHHCCCEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHH-----HHHCCEEEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf             422115222353353204423-----57899899999988888-----86277688862367343576587884899999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC------CCCC-CHHHHHHHHHHHHHC
Q ss_conf             974015688745642378899998742110123467776661699998404588------8888-978999999999978
Q gi|254780833|r  243 KINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENS------SPNI-DNKESLFYCNEAKRR  315 (371)
Q Consensus       243 ~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~------~~~~-~~~~~~~~c~~~k~~  315 (371)
                      .+..|..+|.|....||..|+..+.....       ..+....++|++|||--|      .+.. .+.....+...+.+.
T Consensus       574 ~L~~lPtGGrTPLa~gL~~A~~v~~~~~~-------~~~~~~pl~V~iTDGRaNv~L~~~~g~~qp~~~~~~~a~~L~~~  646 (688)
T TIGR02442       574 RLEELPTGGRTPLAAGLLKAAEVLSNELL-------RDDDRRPLVVVITDGRANVALDVSLGEPQPLDDARTIASKLAAR  646 (688)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99728898987458999999999999861-------16899428998707863542666788841577899999998875


Q ss_pred             -------CCEEEEEEECC-CCC-HHHHHHHCC--CCEEEEE
Q ss_conf             -------98799999418-642-798998338--9808982
Q gi|254780833|r  316 -------GAIVYAIGVQA-EAA-DQFLKNCAS--PDRFYSV  345 (371)
Q Consensus       316 -------gi~i~tIg~~~-~~~-~~~l~~cAs--~~~~y~~  345 (371)
                             |+..-+|=-+. ..- -.+-+++|+  +|.||..
T Consensus       647 ~~R~R~Lg~~~vV~DTE~~~~v~lGlA~~~A~~lgg~~~~l  687 (688)
T TIGR02442       647 ASRIRSLGIKFVVIDTENPGFVRLGLAEDLASALGGEYLRL  687 (688)
T ss_pred             HCCEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEECC
T ss_conf             04301116227899726887542223899999829832247


No 34 
>KOG2353 consensus
Probab=99.12  E-value=1.9e-09  Score=75.35  Aligned_cols=183  Identities=19%  Similarity=0.265  Sum_probs=128.8

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCC---------C
Q ss_conf             1346740699852763115667872148989999987500233555531104798788636741781666---------5
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPL---------A  234 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l---------t  234 (371)
                      ....+-|+++.+|.||||..      .+++.++..+...++.+...+.      +.+.+|+.......|=         .
T Consensus       221 aAt~pKdiviLlD~SgSm~g------~~~~lak~tv~~iLdtLs~~Df------vni~tf~~~~~~v~pc~~~~lvqAt~  288 (1104)
T KOG2353         221 AATSPKDIVILLDVSGSMSG------LRLDLAKQTVNEILDTLSDNDF------VNILTFNSEVNPVSPCFNGTLVQATM  288 (1104)
T ss_pred             CCCCCCCEEEEEECCCCCCC------HHHHHHHHHHHHHHHHCCCCCE------EEEEEECCCCCCCCCCCCCCEEECCH
T ss_conf             46786645999965655544------3169999999999976154776------87876213567565202585220456


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH--
Q ss_conf             587899999740156887456423788999987421101234677766616999984045888888978999999999--
Q gi|254780833|r  235 WGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEA--  312 (371)
Q Consensus       235 ~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~--  312 (371)
                      .++..+++.++.+.+.|.++...|+..++..|.+..  .......+....+.|+++|||.....       ..+-+.-  
T Consensus       289 ~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n--~s~~~~~~~~C~~~iml~tdG~~~~~-------~~If~~yn~  359 (1104)
T KOG2353         289 RNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYN--DSRANTQRSPCNQAIMLITDGVDENA-------KEIFEKYNW  359 (1104)
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCCCCCCEEEEEEECCCCCCH-------HHHHHHHCC
T ss_conf             779999999864141254124355778999998744--45544322500104577624775108-------999986036


Q ss_pred             HHCCCEEEEEEECCCC---CHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHEEE
Q ss_conf             9789879999941864---279899833898089828989999999999996400078
Q gi|254780833|r  313 KRRGAIVYAIGVQAEA---ADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEMVKQRI  367 (371)
Q Consensus       313 k~~gi~i~tIg~~~~~---~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i~~~~i  367 (371)
                      -++.|+|||.-+|...   ....+-.|++.|.|++..+..++.+--.+...-+...++
T Consensus       360 ~~~~Vrvftflig~~~~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~v  417 (1104)
T KOG2353         360 PDKKVRVFTFLIGDEVYDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLV  417 (1104)
T ss_pred             CCCCEEEEEEEECCCCCCCCCCHHHHHHCCCCEEECCCHHHCCHHHHHHHHHHCCCEE
T ss_conf             7773599999924421345412122540788558646656458676556645320002


No 35 
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.11  E-value=1.3e-08  Score=70.35  Aligned_cols=171  Identities=17%  Similarity=0.206  Sum_probs=125.0

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CEEECCCCCCHHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674-17816665587899999
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-IVQTFPLAWGVQHIQEK  243 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~lt~~~~~~~~~  243 (371)
                      .+.+.-++||+|-||||..      .|+..++.++..++...     +....+++++.|... +....|.|......+..
T Consensus       398 ~r~~~lviFvVDASGS~A~------~Rm~~aKGAV~~LL~dA-----Y~~RD~ValIaFRG~~AevlLPPTrSv~~A~r~  466 (584)
T PRK13406        398 QRSETTTIFVVDASGSAAL------HRLAEAKGAVELLLAEC-----YVRRDHVALVAFRGRGAELLLPPTRSLVRAKRS  466 (584)
T ss_pred             CCCCEEEEEEEECCCCHHH------HHHHHHHHHHHHHHHHH-----HHHHCEEEEEEECCCCCEEEECCCCCHHHHHHH
T ss_conf             2566069999828862799------99999999999999999-----960044789987687630741886559999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC-------CHHHHHHHHHHHHHCC
Q ss_conf             740156887456423788999987421101234677766616999984045888888-------9789999999999789
Q gi|254780833|r  244 INRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI-------DNKESLFYCNEAKRRG  316 (371)
Q Consensus       244 i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~-------~~~~~~~~c~~~k~~g  316 (371)
                      +..|..+|+|....|+..+++........         .....+||+|||--|-+-.       .......++..++..|
T Consensus       467 L~~LP~GG~TPLA~GL~~A~~l~~~~r~~---------~~~p~~VllTDGRaNv~ldg~~~r~~a~~da~~~A~~l~~~g  537 (584)
T PRK13406        467 LAGLPGGGGTPLAAGLDAALALALSVRRK---------GQTPTVVLLTDGRANIARDGAGGRAQAEEDALAAARALRAAG  537 (584)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHCC---------CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             96299999885999999999999997557---------995489998279877787778871148999999999999769


Q ss_pred             CEEEEEEECCCCCHHHHHHHCC--CCEEEEECCH--HHHHHHHH
Q ss_conf             8799999418642798998338--9808982898--99999999
Q gi|254780833|r  317 AIVYAIGVQAEAADQFLKNCAS--PDRFYSVQNS--RKLHDAFL  356 (371)
Q Consensus       317 i~i~tIg~~~~~~~~~l~~cAs--~~~~y~~~~~--~~L~~af~  356 (371)
                      |...+|-.+.. .....+.+|.  ++.||...+.  +.|..+-+
T Consensus       538 ~~~vVIDT~~~-~~~~a~~LA~~l~a~Y~~Lp~~~A~~l~~~V~  580 (584)
T PRK13406        538 LPALVIDTSPR-PQPQARALAEAMGARYLPLPRADATRLSQAVR  580 (584)
T ss_pred             CCEEEEECCCC-CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             97899948988-86269999998399189789789899999999


No 36 
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D; InterPro: IPR011776    This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (IPR011775 from INTERPRO), this subunit is not found in archaea.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=99.09  E-value=2.1e-09  Score=75.11  Aligned_cols=170  Identities=20%  Similarity=0.254  Sum_probs=127.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CEEECCCCCCHHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674-17816665587899999
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-IVQTFPLAWGVQHIQEK  243 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~lt~~~~~~~~~  243 (371)
                      ...+--++|++|-||||..     +.|+..||-++..++.+.   +...+.++++++.|... +....|.|.....-|..
T Consensus       507 ~ksg~L~IF~VDASGSsaa-----~~Rm~~AKGAV~~LL~~A---Yv~RD~vkVaLi~FRG~~Ae~LLPPsrSv~~aKr~  578 (705)
T TIGR02031       507 RKSGALLIFVVDASGSSAA-----VARMSEAKGAVELLLGEA---YVHRDQVKVALIAFRGTAAEVLLPPSRSVELAKRR  578 (705)
T ss_pred             CCCCCEEEEEEECCHHHHH-----HHHHHHHHHHHHHHHHHH---HHHCCCEEEEEEECCCCHHHHCCCCHHHHHHHHHH
T ss_conf             0288279997606357899-----999987789999998765---44136035776304443000037852358999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC-------C---CC----------CHH
Q ss_conf             740156887456423788999987421101234677766616999984045888-------8---88----------978
Q gi|254780833|r  244 INRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSS-------P---NI----------DNK  303 (371)
Q Consensus       244 i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~-------~---~~----------~~~  303 (371)
                      ++.|..||||-...||..||..-.++.       ..|+-.+-.|||+|||=.|-       +   ..          -..
T Consensus       579 L~~LP~GGGtPLA~gL~~A~~~a~qar-------~~GD~~~~~ivliTDGRgNvpL~~~~DP~~~~~~r~PrPts~~l~~  651 (705)
T TIGR02031       579 LDVLPGGGGTPLAAGLAAAVEVAKQAR-------SRGDVGRITIVLITDGRGNVPLDASVDPKAAKADRLPRPTSEELKE  651 (705)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             715899985678999999999998510-------2688524556776077877467656786100235678726899999


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHCC--CCEEEEECCHH
Q ss_conf             9999999999789879999941864-2798998338--98089828989
Q gi|254780833|r  304 ESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCAS--PDRFYSVQNSR  349 (371)
Q Consensus       304 ~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cAs--~~~~y~~~~~~  349 (371)
                      +...++..+.+.||-.-+|=-.... ...+++++|.  .+|||.-.++.
T Consensus       652 e~~~lA~~i~~~G~~~lVIDT~~~f~s~G~a~~lA~~~~a~Y~yLP~a~  700 (705)
T TIGR02031       652 EVLALARKIREAGISALVIDTANKFVSTGFAKKLARKLGARYIYLPNAT  700 (705)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCC
T ss_conf             9999999988718865898267786676448999998589067136888


No 37 
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.89  E-value=3.8e-07  Score=61.50  Aligned_cols=169  Identities=15%  Similarity=0.220  Sum_probs=119.1

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CEEECCCCCCHHHHHHHHHCCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674-1781666558789999974015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-IVQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      .+++++|.|.+|....- ..+|+....+.+..++.++-.   .+...+.|++...++ +....+++.|.......+....
T Consensus         5 ~l~iiiD~S~am~~~D~-~PtRl~~~~~~l~~Fi~effd---qNPisqlGii~~rn~~a~~ls~lsgn~~~hi~~l~~~~   80 (183)
T cd01453           5 HLIIVIDCSRSMEEQDL-KPSRLAVVLKLLELFIEEFFD---QNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTAR   80 (183)
T ss_pred             EEEEEEECCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHC---CCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCC
T ss_conf             99999988376775658-954999999999999999870---79740489999946816997646899899999998545


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             -6887456423788999987421101234677766616999984045888888978999999999978987999994186
Q gi|254780833|r  249 -FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       249 -~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~  327 (371)
                       +.|......|+..+...|...         .....+.++|++. .-.+.   ++.+.....+.+|+.+|++.+||+...
T Consensus        81 ~~~G~~SLqN~Le~A~~~L~~~---------P~~~sREILiI~~-Sl~t~---DpgdI~~ti~~lk~~~IrvsvI~l~aE  147 (183)
T cd01453          81 ECSGEPSLQNGLEMALESLKHM---------PSHGSREVLIIFS-SLSTC---DPGNIYETIDKLKKENIRVSVIGLSAE  147 (183)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEEEC-CCCCC---CCCCHHHHHHHHHHCCCEEEEEEECHH
T ss_conf             8999813999999999998208---------9878448999975-65347---976499999999983978999974278


Q ss_pred             CCHHHHHHHC--CCCEEEEECCHHHHHHHHHH
Q ss_conf             4279899833--89808982898999999999
Q gi|254780833|r  328 AADQFLKNCA--SPDRFYSVQNSRKLHDAFLR  357 (371)
Q Consensus       328 ~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~  357 (371)
                      .  ..+|.++  ++|.|+-+-|..-+.+.+.+
T Consensus       148 v--~I~k~l~~~TgG~y~V~lde~H~~~ll~~  177 (183)
T cd01453         148 M--HICKEICKATNGTYKVILDETHLKELLLE  177 (183)
T ss_pred             H--HHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf             9--99999999839976875399999999995


No 38 
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.79  E-value=1.4e-07  Score=64.14  Aligned_cols=157  Identities=16%  Similarity=0.124  Sum_probs=90.8

Q ss_pred             CCEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf             4069985276311566787-214898999998750023355553110479878863674178166655878999997401
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGP-GMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRL  247 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l  247 (371)
                      -|.+|++|.||||.+..++ ...|.+.+++++..+.......+.-.    +.++-++........  -+.+.+...-...
T Consensus         3 rD~v~lIDdSgSM~~~d~~~~~sRW~~a~~al~~iA~~c~~~D~DG----Idvyfln~~~~~~~~--~~~~~V~~iF~~~   76 (199)
T cd01457           3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDG----ITVYLFSGDFRRYDN--VNSSKVDQLFAEN   76 (199)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEECCCCCCCC--CCHHHHHHHHHCC
T ss_conf             7779999688876677678887629999999999999998748899----879996277645688--8999999998558


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-EEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEC
Q ss_conf             5688745642378899998742110123467776661-699998404588888897899999999997-89879999941
Q gi|254780833|r  248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK-KYIIFLTDGENSSPNIDNKESLFYCNEAKR-RGAIVYAIGVQ  325 (371)
Q Consensus       248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~-~gi~i~tIg~~  325 (371)
                      .|.|.|+....+..............      ...++ -.||++|||.+++...-.......+..+.+ ..+-|-.+.+|
T Consensus        77 ~P~G~T~~g~~L~~il~~y~~r~~~~------~~kp~g~~iIVITDG~p~D~~av~~~Ii~aa~kLd~~~qlgIqF~QVG  150 (199)
T cd01457          77 SPDGGTNLAAVLQDALNNYFQRKENG------ATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIG  150 (199)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCC------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             98997963799999989998732006------899986079998279979828899999999986344010036777855


Q ss_pred             CCCC-HHHHHHHC
Q ss_conf             8642-79899833
Q gi|254780833|r  326 AEAA-DQFLKNCA  337 (371)
Q Consensus       326 ~~~~-~~~l~~cA  337 (371)
                      .|.. ..+|+.+=
T Consensus       151 ~D~~A~~fL~~LD  163 (199)
T cd01457         151 RDPAATAFLKALD  163 (199)
T ss_pred             CCHHHHHHHHHHC
T ss_conf             9688999999858


No 39 
>pfam00362 Integrin_beta Integrin, beta chain. Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer. The sequences repeats have been trimmed due to an overlap with EGF.
Probab=98.73  E-value=1.3e-06  Score=58.24  Aligned_cols=192  Identities=17%  Similarity=0.269  Sum_probs=113.2

Q ss_pred             EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------
Q ss_conf             2210001346740699852763115667872148989999987500233555531104798788636741----------
Q gi|254780833|r  158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------  227 (371)
Q Consensus       158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------  227 (371)
                      ........+.|+|+++++|.|.||...    .++++.+...+...+..+..      ..|+|.-+|-+++          
T Consensus        90 ~~~~~~aedYPVDLYYLMDLS~SM~dD----l~~lk~LG~~La~~m~~iT~------nfrlGFGSFVDK~v~P~~~t~p~  159 (424)
T pfam00362        90 KLKVRQAEDYPVDLYYLMDLSYSMKDD----LENLKTLGTDLAKEMANITS------NFRLGFGSFVDKTVSPYVSTVPE  159 (424)
T ss_pred             EEEEECCCCCCCEEEEEEECCHHHHHH----HHHHHHHHHHHHHHHHHHCC------CCEEECCCCCCCCCCCCCCCCHH
T ss_conf             999871356971369986054146778----99999999999999986140------43563020004766885337977


Q ss_pred             -------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             -------------------7816665587899999740156887456423788999987421101234677766616999
Q gi|254780833|r  228 -------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYII  288 (371)
Q Consensus       228 -------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~iv  288 (371)
                                         .-+.|||.+.......++....+|+-...+|   |+.+|-....=....++ ++..++++|
T Consensus       160 ~l~~PC~~~~~~C~~~fgf~~~l~LT~~~~~F~~~v~~q~iSgNlD~PEG---GfDAlmQ~aVC~~~IGW-R~~arrllv  235 (424)
T pfam00362       160 KLKNPCSSKNPGCQPPFGFRHVLSLTDDTDRFNEEVKKQKISGNLDAPEG---GFDAIMQAAVCGEEIGW-RNEARRLLV  235 (424)
T ss_pred             HHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHHCCCCCC-CCCCEEEEE
T ss_conf             85398757788988980222002467778999999874636467778750---17777788761423377-778528999


Q ss_pred             EEECCCCC--------------CC--------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCC
Q ss_conf             98404588--------------88--------------88978999999999978987-999994186427989983389
Q gi|254780833|r  289 FLTDGENS--------------SP--------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCASP  339 (371)
Q Consensus       289 l~TDG~~~--------------~~--------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cAs~  339 (371)
                      |.||+..+              ++              ..+.+...++.+.+++++|. ||+|.=..-.-.+.|.+.-.+
T Consensus       236 ~~TDa~fH~AgDGkL~GIv~PNDg~CHL~~~g~Yt~s~~~DYPSv~ql~~kl~ennI~~IFAVt~~~~~~Y~~Ls~~i~g  315 (424)
T pfam00362       236 FTTDAGFHFAGDGKLGGIVEPNDGQCHLDDNGEYTASTTLDYPSVGQLAEKLSENNINPIFAVTENVVDLYKELSELIPG  315 (424)
T ss_pred             EECCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCC
T ss_conf             98588751357763343534888730448987614456678888899999998649259999750245899999975776


Q ss_pred             CEE----EEECCHHH-HHHHHHHHHHHHH
Q ss_conf             808----98289899-9999999999640
Q gi|254780833|r  340 DRF----YSVQNSRK-LHDAFLRIGKEMV  363 (371)
Q Consensus       340 ~~~----y~~~~~~~-L~~af~~I~~~i~  363 (371)
                      ...    -+..|--+ +.+++++|..++.
T Consensus       316 s~vg~L~~DSsNIv~LI~~aY~ki~S~V~  344 (424)
T pfam00362       316 STVGVLSSDSSNVVQLIKDAYNKISSKVE  344 (424)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHEEEE
T ss_conf             52566246750289999999987522899


No 40 
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.69  E-value=3.9e-07  Score=61.44  Aligned_cols=175  Identities=17%  Similarity=0.184  Sum_probs=113.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----------CCCCCCCCEEEEEEEEEECCCCEEECCCCCCH
Q ss_conf             74069985276311566787214898999998750023----------35555311047987886367417816665587
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDI----------IKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGV  237 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~  237 (371)
                      .+-+.+.+|.|-||..+...-..-++.-.+++.-+...          ++.......++++..+.-.+.        .-.
T Consensus       446 Dla~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDe--------s~~  517 (637)
T COG4548         446 DLAFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDE--------SMG  517 (637)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHCCCHHHCCCCEEEEEEECCCC--------CCC
T ss_conf             614678762343367776522125787899999861326551788874372121376312311103430--------004


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC-----CCHHHHHHHHHHH
Q ss_conf             89999974015688745642378899998742110123467776661699998404588888-----8978999999999
Q gi|254780833|r  238 QHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPN-----IDNKESLFYCNEA  312 (371)
Q Consensus       238 ~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~-----~~~~~~~~~c~~~  312 (371)
                      .++...|-.|.|+..|....++..+-.-|.           ..+..+|++|++|||++|.-+     ..-..+......+
T Consensus       518 ~~~~~RImALePg~ytR~G~AIR~As~kL~-----------~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~ea  586 (637)
T COG4548         518 ETVGPRIMALEPGYYTRDGAAIRHASAKLM-----------ERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEA  586 (637)
T ss_pred             CCCCHHHEECCCCCCCCCCHHHHHHHHHHH-----------CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             553312213376644431099999999983-----------474112489994489854344323321115379999999


Q ss_pred             HHCCCEEEEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             97898799999418642798998338980898289899999999999964
Q gi|254780833|r  313 KRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEM  362 (371)
Q Consensus       313 k~~gi~i~tIg~~~~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i  362 (371)
                      +..||.+|.|.+..+...+ +...-.-+.|-.|++..+|-.++-.|-+++
T Consensus       587 Rk~Gi~VF~Vtld~ea~~y-~p~~fgqngYa~V~~v~~LP~~L~~lyrkL  635 (637)
T COG4548         587 RKSGIEVFNVTLDREAISY-LPALFGQNGYAFVERVAQLPGALPPLYRKL  635 (637)
T ss_pred             HHCCCEEEEEEECCHHHHH-HHHHHCCCCEEECCCHHHCCHHHHHHHHHH
T ss_conf             8658347999833305555-288852674697024001605579999996


No 41 
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular  matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=98.68  E-value=2.1e-06  Score=57.02  Aligned_cols=191  Identities=16%  Similarity=0.250  Sum_probs=112.8

Q ss_pred             EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------
Q ss_conf             2210001346740699852763115667872148989999987500233555531104798788636741----------
Q gi|254780833|r  158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------  227 (371)
Q Consensus       158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------  227 (371)
                      ........+.|+|+.+++|.|.||...    .++++.+...+...+..+.      ...|+|.-+|-+++          
T Consensus        89 ~~~~~~aedYPVDLYYLMDLS~SM~dD----l~~l~~LG~~La~~m~~iT------~nfrlGFGsFVDK~v~Py~~t~p~  158 (423)
T smart00187       89 TLTVRQAEDYPVDLYYLMDLSYSMKDD----LDNLKSLGDDLAREMKGLT------SNFRLGFGSFVDKTVSPFVSTRPE  158 (423)
T ss_pred             EEEEECCCCCCCEEEEEEECCHHHHHH----HHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCHH
T ss_conf             987303246971268885054457888----9999999999999998640------054551111203665775448978


Q ss_pred             -------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             -------------------7816665587899999740156887456423788999987421101234677766616999
Q gi|254780833|r  228 -------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYII  288 (371)
Q Consensus       228 -------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~iv  288 (371)
                                         .-+.|||.|.....+.++....+|+-...+|   |+.+|-....=....++ +++.+|.+|
T Consensus       159 ~l~~PC~~~~~~C~ppfgf~n~l~LT~d~~~F~~~V~~q~iSgNlD~PEG---GfDAlmQ~avC~~~IGW-R~~arrllV  234 (423)
T smart00187      159 KLENPCPNYNLTCEPPYGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEG---GFDAIMQAAVCTEQIGW-REDARRLLV  234 (423)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHHCCCCCC-CCCCEEEEE
T ss_conf             85499878898767981301112367888999999862536346688761---27788888752000376-557438999


Q ss_pred             EEECCCCC--------------CCC--------------CCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCC
Q ss_conf             98404588--------------888--------------8978999999999978987-999994186427989983389
Q gi|254780833|r  289 FLTDGENS--------------SPN--------------IDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCASP  339 (371)
Q Consensus       289 l~TDG~~~--------------~~~--------------~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cAs~  339 (371)
                      |.||+..+              ++.              .+.+...++.+.+++++|. ||+|.=..-.-.+.|...-.+
T Consensus       235 f~TDa~fH~AgDGkL~GIv~PNDg~CHLd~~g~Yt~s~~~DYPSi~ql~~kl~ennI~~IFAVT~~~~~~Y~~Ls~~ipg  314 (423)
T smart00187      235 FSTDAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIFAVTKKQVSLYKELSALIPG  314 (423)
T ss_pred             EECCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
T ss_conf             98378630236762443543788730327888524456567887899999998539327998522045699999875775


Q ss_pred             ---CE-EEEECCHHH-HHHHHHHHHHHH
Q ss_conf             ---80-898289899-999999999964
Q gi|254780833|r  340 ---DR-FYSVQNSRK-LHDAFLRIGKEM  362 (371)
Q Consensus       340 ---~~-~y~~~~~~~-L~~af~~I~~~i  362 (371)
                         |. --+..|--+ +.++|++|..++
T Consensus       315 s~vg~L~~DSsNVv~LI~~aY~ki~S~V  342 (423)
T smart00187      315 SSVGVLSEDSSNVVELIKDAYNKISSRV  342 (423)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCEEE
T ss_conf             4035524575138999999998750189


No 42 
>pfam11775 CobT_C Cobalamin biosynthesis protein CobT VWA domain. This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid.
Probab=98.62  E-value=9.5e-07  Score=59.09  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=85.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHH---HHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE-----------ECCC-
Q ss_conf             406998527631156678721489899---9998750023355553110479878863674178-----------1666-
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVA---TRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ-----------TFPL-  233 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-----------~~~l-  233 (371)
                      .-+.+++|+||||...      ++..+   .+.+...++.....-++     .|..+..|+...           ..|- 
T Consensus        13 t~VtlLID~SGSMrgr------~i~~Aa~~adiL~~~Ler~gv~~EI-----LGFtT~~wkGg~~r~~w~~~G~p~~pgR   81 (220)
T pfam11775        13 ACVQLLIDLSGSMGGR------KIQLAAACADIIADALDRCGVKNEI-----LGFTTFAWKGGPDREAMLAAGFPAFEAL   81 (220)
T ss_pred             EEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHCCCCEEE-----EEECCCCCCCCCHHHHHHHCCCCCCCHH
T ss_conf             2899988688888988------6789999999999999876998799-----8540476577502999987599767236


Q ss_pred             ----------CCCHH--HHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC---
Q ss_conf             ----------55878--999997401568---874564237889999874211012346777666169999840458---
Q gi|254780833|r  234 ----------AWGVQ--HIQEKINRLIFG---STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGEN---  295 (371)
Q Consensus       234 ----------t~~~~--~~~~~i~~l~~~---g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~---  295 (371)
                                ..+..  .-+..+..+.-.   -..--.+++.|+.+.|..           .+..+|++++++||.|   
T Consensus        82 lndl~hiiyk~ad~~wrrar~~lg~m~~~gllkENiDGEAL~wA~~RL~~-----------R~e~RkILmViSDGaP~dd  150 (220)
T pfam11775        82 LLDIIHIINEKADAPEIRARKNLGCMCEEFLLKENIDGEALAQAAKLFAG-----------RMEDKKILLMISDGAPCDD  150 (220)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-----------CCCCCEEEEEECCCCCCCC
T ss_conf             65566421244688307789998777663144318971999999999863-----------9312469999758996776


Q ss_pred             -----CCCCCCHHHHHHHHHHHH-HCCCEEEEEEECCCCCHHHHHHHCCCCEEEEECCHHHHHHHH-HHHH
Q ss_conf             -----888889789999999999-789879999941864279899833898089828989999999-9999
Q gi|254780833|r  296 -----SSPNIDNKESLFYCNEAK-RRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAF-LRIG  359 (371)
Q Consensus       296 -----~~~~~~~~~~~~~c~~~k-~~gi~i~tIg~~~~~~~~~l~~cAs~~~~y~~~~~~~L~~af-~~I~  359 (371)
                           |.++.-............ ..+|++..||++-|..+++-+.      +..+.+.+||..++ ++++
T Consensus       151 st~s~n~~~yL~~hLr~vi~~ie~~~~iel~aIGIghDv~r~yY~~------av~i~d~eeL~~~~~~~L~  215 (220)
T pfam11775       151 STLSVAAGDGFEQHLRHIIEEIETLSEIDLIAIGIGHDAPRRYYKN------AALINDAEELGGAITEELA  215 (220)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHC------CEEECCHHHHHHHHHHHHH
T ss_conf             4112587776799999999998506882699987477768666506------5686038886599999999


No 43 
>pfam04056 Ssl1 Ssl1-like. Ssl1-like proteins are 40kDa subunits of the Transcription factor II H complex.
Probab=98.32  E-value=0.00013  Score=46.17  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=109.9

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             06998527631156678721489899999875002335555311047987886367-41781666558789999974015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      .+++++|-|.+|....-.+ +|+....+.+..++.++-   +.|...+.|++...+ .+..+.+++.+......++..+.
T Consensus        54 hl~iilD~S~aM~e~DlkP-~R~~~~l~~l~~Fi~efF---dqNPiSQlgii~~rn~~a~~ls~lsgnp~~hi~aL~~~~  129 (250)
T pfam04056        54 HLYIVLDCSRAMEEKDLRP-SRFACTIKYLETFVEEFF---DQNPISQIGLITCKDGRAHRLTDLTGNPRVHIKALKSLR  129 (250)
T ss_pred             EEEEEEECCHHHHHCCCCC-CHHHHHHHHHHHHHHHHH---HCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf             8999998827676351586-489999999999999987---439830227999965713783325799899999999874


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             ---68874564237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r  249 ---FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       249 ---~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                         +.|.-....|+..+...|...       +  ....+.++|++.-=    ...++.+.....+.+|+.+|++.+||+.
T Consensus       130 ~~~~~G~pSLqN~Le~a~~~L~~~-------P--~~~sREILii~gSL----~T~DPgdI~~tI~~l~~~~IrvsvI~La  196 (250)
T pfam04056       130 EAECGGDPSLQNALELARASLKHV-------P--SHGSREVLIIFGSL----STCDPGDIYSTIDTLKKEKIRCSVIGLS  196 (250)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCC-------C--CCCCEEEEEEEEEC----CCCCCCCHHHHHHHHHHCCCEEEEEEEC
T ss_conf             069999920899999999887508-------9--87854899998204----4458865999999999759079998733


Q ss_pred             CCCCHHHHHHHC--CCCEEEEECCHHHHHHHHHH
Q ss_conf             864279899833--89808982898999999999
Q gi|254780833|r  326 AEAADQFLKNCA--SPDRFYSVQNSRKLHDAFLR  357 (371)
Q Consensus       326 ~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~  357 (371)
                      ..  -...|.++  ++|.|.-+-|..-+.+.+.+
T Consensus       197 aE--v~Ick~l~~~T~G~y~V~lde~Hfk~ll~~  228 (250)
T pfam04056       197 AE--VFICKELCKATNGTYSVALDETHLKELLLE  228 (250)
T ss_pred             HH--HHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf             89--999999999749988875699999999995


No 44 
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.21  E-value=1.6e-05  Score=51.74  Aligned_cols=159  Identities=21%  Similarity=0.212  Sum_probs=87.9

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE--ECCCCCCHHHHHHHHHCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674178--166655878999997401
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ--TFPLAWGVQHIQEKINRL  247 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~lt~~~~~~~~~i~~l  247 (371)
                      .+++.+|.||||.+.      +..-++..+..++....     ..+-++.+.-|.+....  ..+...+..++..++...
T Consensus       274 pvilllD~SGSM~G~------~e~~AKAvalAl~~~al-----aenR~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~  342 (437)
T COG2425         274 PVILLLDKSGSMSGF------KEQWAKAVALALMRIAL-----AENRDCYVILFDSEVIEYELYEKKIDIEELIEFLSYV  342 (437)
T ss_pred             CEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHH-----HHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             879999588885782------88999999999999998-----8430538999525202555057745799999999650


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             56887456423788999987421101234677766616999984045888888978999999999978987999994186
Q gi|254780833|r  248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      - +|||++..++..+...+......           +--||++|||++--.   ..-....-...|..+.++|+|-++..
T Consensus       343 f-~GGTD~~~~l~~al~~~k~~~~~-----------~adiv~ITDg~~~~~---~~~~~~v~e~~k~~~~rl~aV~I~~~  407 (437)
T COG2425         343 F-GGGTDITKALRSALEDLKSRELF-----------KADIVVITDGEDERL---DDFLRKVKELKKRRNARLHAVLIGGY  407 (437)
T ss_pred             C-CCCCCHHHHHHHHHHHHHCCCCC-----------CCCEEEEECCHHHHH---HHHHHHHHHHHHHHHCEEEEEEECCC
T ss_conf             6-89888589999999986436656-----------777899804376654---67899999998875434899996478


Q ss_pred             CCHHHHHHHCCCCE-EEEECCHHHHHHHHHHH
Q ss_conf             42798998338980-89828989999999999
Q gi|254780833|r  328 AADQFLKNCASPDR-FYSVQNSRKLHDAFLRI  358 (371)
Q Consensus       328 ~~~~~l~~cAs~~~-~y~~~~~~~L~~af~~I  358 (371)
                      .. +.+..+.  ++ .|.++. .+...+++.+
T Consensus       408 ~~-~~l~~Is--d~~i~~~~~-~~~~kv~~~~  435 (437)
T COG2425         408 GK-PGLMRIS--DHIIYRVEP-RDRVKVVKRW  435 (437)
T ss_pred             CC-CCCCEEC--EEEEEEECC-HHHHHHHHCC
T ss_conf             98-6600011--146787274-7776777344


No 45 
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.08  E-value=4.8e-05  Score=48.83  Aligned_cols=164  Identities=20%  Similarity=0.219  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHH
Q ss_conf             00013467406998527631156678721489899999875002335555311047987886367417816665--5878
Q gi|254780833|r  161 ISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQ  238 (371)
Q Consensus       161 ~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~  238 (371)
                      .......+....+++|.|+||...     . +..++......+..+...+      ....+.|........|.+  .+..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~s~~~~-----~-~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   97 (399)
T COG2304          30 IDLDLLVPANLTLAIDTSGSMTGA-----L-LELAKSAAIELVNGLNPGD------LLSIVTFAGSADVLIPPTGATNKE   97 (399)
T ss_pred             CCCCCCCCCHHHHHHCCCCCCHHH-----H-HHHHHHHHHHHHHCCCCHH------HHEEEECCCCCCEECCCCCCCCHH
T ss_conf             111000221002221366410055-----6-7767899888773156211------120461156555012564223227


Q ss_pred             HHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999740-15688745642378899998742110123467776661699998404588888897899999999997898
Q gi|254780833|r  239 HIQEKINR-LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGA  317 (371)
Q Consensus       239 ~~~~~i~~-l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi  317 (371)
                      .+...|+. +.+.+.|....++.|+...+....         .......+.+.|||+++.+..+........+.....+|
T Consensus        98 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i  168 (399)
T COG2304          98 SITAAIDQSLQAGGATAVEASLSLAVELAAKAL---------PRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGI  168 (399)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCHHCCCCCHHHHHHHHCCCCCCCE
T ss_conf             788887640264554305778999999876423---------54553233330364120276678899998634556762


Q ss_pred             EEEEEEECCCCCHHHHHHHC--CCCEEEEE
Q ss_conf             79999941864279899833--89808982
Q gi|254780833|r  318 IVYAIGVQAEAADQFLKNCA--SPDRFYSV  345 (371)
Q Consensus       318 ~i~tIg~~~~~~~~~l~~cA--s~~~~y~~  345 (371)
                      .+.++|++.+.+.+.+...+  ..|.+...
T Consensus       169 ~~~~~g~~~~~n~~~~~~~~~~~~g~l~~~  198 (399)
T COG2304         169 VLDTLGLGDDVNEDELTGIAAAANGNLAFI  198 (399)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             786313552267777776553036641102


No 46 
>KOG2807 consensus
Probab=98.06  E-value=0.0003  Score=44.04  Aligned_cols=167  Identities=16%  Similarity=0.148  Sum_probs=110.3

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHH----HHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCCCCCHHHHHHH
Q ss_conf             4069985276311566787214898999----99875002335555311047987886367-417816665587899999
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVAT----RSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPLAWGVQHIQEK  243 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~lt~~~~~~~~~  243 (371)
                      -.+++|+|.|..|......+ .|.....    ..+.+++++.       ...++|++.--+ .+.....++.|......+
T Consensus        61 Rhl~iviD~S~am~e~Df~P-~r~a~~~K~le~Fv~eFFdQN-------PiSQigii~~k~g~A~~lt~ltgnp~~hI~a  132 (378)
T KOG2807          61 RHLYIVIDCSRAMEEKDFRP-SRFANVIKYLEGFVPEFFDQN-------PISQIGIISIKDGKADRLTDLTGNPRIHIHA  132 (378)
T ss_pred             EEEEEEEEHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHCCC-------CHHHEEEEEEECCHHHHHHHHCCCHHHHHHH
T ss_conf             36899987345566444780-489999999999999986149-------6203358997055326888714887889999


Q ss_pred             HHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             74015-68874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r  244 INRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       244 i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      +..+. .+|.-....+++.+...|..         ..+-..+.++|+++-=-    ..++.+.....+.+|..+|++.+|
T Consensus       133 L~~~~~~~g~fSLqNaLe~a~~~Lk~---------~p~H~sREVLii~ssls----T~DPgdi~~tI~~lk~~kIRvsvI  199 (378)
T KOG2807         133 LKGLTECSGDFSLQNALELAREVLKH---------MPGHVSREVLIIFSSLS----TCDPGDIYETIDKLKAYKIRVSVI  199 (378)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCCEEEEEEEEEEC----CCCCCCHHHHHHHHHHHCEEEEEE
T ss_conf             73122448886788799999998517---------87656327999985403----558520999999998617279998


Q ss_pred             EECCCCCHHHHHHH--CCCCEEEEECCHHHHHHHHHHH
Q ss_conf             94186427989983--3898089828989999999999
Q gi|254780833|r  323 GVQAEAADQFLKNC--ASPDRFYSVQNSRKLHDAFLRI  358 (371)
Q Consensus       323 g~~~~~~~~~l~~c--As~~~~y~~~~~~~L~~af~~I  358 (371)
                      |+....  ..-+.+  |++|.|+-+-+..-|.+.|.+-
T Consensus       200 gLsaEv--~icK~l~kaT~G~Y~V~lDe~HlkeLl~e~  235 (378)
T KOG2807         200 GLSAEV--FICKELCKATGGRYSVALDEGHLKELLLEH  235 (378)
T ss_pred             EECHHH--HHHHHHHHHHCCEEEEEECHHHHHHHHHHC
T ss_conf             500558--999999886188579875789999999845


No 47 
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses  In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A 
Probab=98.02  E-value=0.00084  Score=41.30  Aligned_cols=174  Identities=13%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC------CEEECCCCCCHHHHHHHH
Q ss_conf             69985276311566787214898999998750023355553110479878863674------178166655878999997
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK------IVQTFPLAWGVQHIQEKI  244 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------~~~~~~lt~~~~~~~~~i  244 (371)
                      +.+|+|.||||-.. ++.-.|++...+++...++.+......   .++..+--+.+      +....|+.+++..++ .+
T Consensus         3 lr~v~DvSgSMYRF-Ng~DgRL~R~lEa~~MvMEaf~g~e~k---~~ydIvGHSGd~~~I~lV~~~~~Pk~~keRl~-vl   77 (191)
T cd01455           3 LKLVVDVSGSMYRF-NGYDGRLDRSLEAVVMVMEAFDGFEDK---IQYDIIGHSGDGPCVPFVKTNHPPKNNKERLE-TL   77 (191)
T ss_pred             EEEEEECCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCCE---EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH-HH
T ss_conf             69999735442330-475328999999999999986175400---57887502688775102348999986689999-99


Q ss_pred             HCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             40156-----8874564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r  245 NRLIF-----GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV  319 (371)
Q Consensus       245 ~~l~~-----~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i  319 (371)
                      ..+.+     ..|-++-+++.++...+....          +.-..++|+++|.+-......+.....+.+  ++..|+-
T Consensus        78 ~~M~AHsQyC~sGD~Tlea~~~Ai~~l~a~~----------d~De~fVivlSDANL~RYgI~p~~l~~~l~--~~p~V~a  145 (191)
T cd01455          78 KMMHAHSQFCWSGDHTVEATEFAIKELAAKE----------DFDEAIVIVLSDANLERYGIQPKKLADALA--REPNVNA  145 (191)
T ss_pred             HHHHHHHHHEECCCCHHHHHHHHHHHHHHCC----------CCCCCEEEEECCCCHHHCCCCHHHHHHHHH--CCCCCCE
T ss_conf             9863120100258844899999999875302----------677608999814764431889899999973--3877668


Q ss_pred             EEEEECCCCCH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             99994186427-9899833898089828989999999999996
Q gi|254780833|r  320 YAIGVQAEAAD-QFLKNCASPDRFYSVQNSRKLHDAFLRIGKE  361 (371)
Q Consensus       320 ~tIg~~~~~~~-~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~  361 (371)
                      |.|-++.-+++ +.|+.-=-.|+-|...+..+|..+|++|+..
T Consensus       146 ~~IfIgslg~eA~~l~~~lP~G~~fVc~dt~~lP~il~qIfts  188 (191)
T cd01455         146 FVIFIGSLSDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS  188 (191)
T ss_pred             EEEEEECHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             9999735167999999748997417853653678999999887


No 48 
>COG4655 Predicted membrane protein [Function unknown]
Probab=97.98  E-value=3.2e-06  Score=55.94  Aligned_cols=58  Identities=14%  Similarity=0.285  Sum_probs=53.1

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8752036871899999999999999999999999999999999999999999986520
Q gi|254780833|r    7 RNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKIL   64 (371)
Q Consensus         7 ~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~ks~Lq~a~DaA~LAaa~~~~   64 (371)
                      +.|.|.+|+-+.|+.++.++..++.++++|||++.|..|.+||+++|-|+++++....
T Consensus         2 ~g~~r~~rs~~gvltal~~~lal~~l~l~VD~G~l~leqR~LQ~~ADlAAiaAAs~~~   59 (565)
T COG4655           2 NGWPRRQRSMVGVLTALFVPLALATLLLGVDYGYLYLEQRELQRVADLAAIAAASNLD   59 (565)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHHCC
T ss_conf             8423767667789999999999998865022012441178788877699888776279


No 49 
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's  proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.90  E-value=0.0013  Score=40.14  Aligned_cols=169  Identities=15%  Similarity=0.123  Sum_probs=113.0

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             06998527631156678721489899999875002335555311047987886367-41781666558789999974015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      .+++.+|+|..|..... ..+|++.-.+++.........   .+....+|+.+... .......||.+...+...+..+.
T Consensus         5 Atmi~iDNSe~~RNGDy-~PtR~~AQ~dAvn~i~~~k~~---~NpEn~VGl~tmag~~~~Vl~TlT~D~gkiL~~lh~i~   80 (187)
T cd01452           5 ATMICIDNSEYMRNGDY-PPTRFQAQADAVNLICQAKTR---SNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ   80 (187)
T ss_pred             EEEEEEECCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHCCCCC
T ss_conf             89999978566505898-971899999999999977751---49533113576158986689844865788987532677


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC-
Q ss_conf             6887456423788999987421101234677766616999984045888888978999999999978987999994186-
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE-  327 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~-  327 (371)
                      ++|.-+...|++-+.-.|.-.         ..+..++-||+|--. +-.  .+..+...+...+|+++|.|-.|.||.. 
T Consensus        81 ~~G~~~~~~~IqiA~LALKHR---------qnk~~~qRIv~FVgS-Pi~--~~ek~l~~laKklKKnnV~vDII~FGe~~  148 (187)
T cd01452          81 PKGKANFITGIQIAQLALKHR---------QNKNQKQRIVAFVGS-PIE--EDEKDLVKLAKRLKKNNVSVDIINFGEID  148 (187)
T ss_pred             CCCEECHHHHHHHHHHHHHCC---------CCCCCCEEEEEEECC-CCC--CCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             187651887999999997234---------677754479999789-875--57899999999875558535899946888


Q ss_pred             CCHHHHHHHC----C--CCEEEEECCHHHH-HHH
Q ss_conf             4279899833----8--9808982898999-999
Q gi|254780833|r  328 AADQFLKNCA----S--PDRFYSVQNSRKL-HDA  354 (371)
Q Consensus       328 ~~~~~l~~cA----s--~~~~y~~~~~~~L-~~a  354 (371)
                      .+.+.|+...    +  +.|+-.+.....| .++
T Consensus       149 ~n~~kL~~f~~~vn~~~~Shlv~ippg~~lLSd~  182 (187)
T cd01452         149 DNTEKLTAFIDAVNGKDGSHLVSVPPGENLLSDA  182 (187)
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
T ss_conf             9989999999984589982599947998645676


No 50 
>KOG3768 consensus
Probab=97.77  E-value=0.00038  Score=43.39  Aligned_cols=192  Identities=17%  Similarity=0.139  Sum_probs=111.2

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE-CCCCCCHHHHHHHHHCCCC
Q ss_conf             699852763115667872148989999987500233555531104798788636741781-6665587899999740156
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT-FPLAWGVQHIQEKINRLIF  249 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~lt~~~~~~~~~i~~l~~  249 (371)
                      +.|++|.|+||.+.--...+.++.++.++-.++.......... ..|+-+++|......+ ..+..+...+.+.|..|.+
T Consensus         4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~-gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a   82 (888)
T KOG3768           4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRET-GDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA   82 (888)
T ss_pred             EEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             9999706641222036783156777779999999874154124-865899862458602556776503079888776157


Q ss_pred             CCCCC-CCCHHHHHHHHHHHHHHCC----CCCCCCC-CCCCEEEEEEECCCCCCCCCCHHHH-----------HHHHHHH
Q ss_conf             88745-6423788999987421101----2346777-6661699998404588888897899-----------9999999
Q gi|254780833|r  250 GSTTK-STPGLEYAYNKIFDAKEKL----EHIAKGH-DDYKKYIIFLTDGENSSPNIDNKES-----------LFYCNEA  312 (371)
Q Consensus       250 ~g~T~-~~~~~~~~~~~l~~~~~~~----~~~~~~~-~~~~k~ivl~TDG~~~~~~~~~~~~-----------~~~c~~~  312 (371)
                      .+++- ...+...++..|.-..-..    .+.++.- .-..-+||++|||---.+.......           ...-...
T Consensus        83 ~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~Tkep  162 (888)
T KOG3768          83 PYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEMTKEP  162 (888)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             63124556788877654315555305545555657456686489998248721344677515885068999862023563


Q ss_pred             HHCCCEEEEEEECC--------------CCCH-HHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             97898799999418--------------6427-9899833-89808982898999999999999640
Q gi|254780833|r  313 KRRGAIVYAIGVQA--------------EAAD-QFLKNCA-SPDRFYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       313 k~~gi~i~tIg~~~--------------~~~~-~~l~~cA-s~~~~y~~~~~~~L~~af~~I~~~i~  363 (371)
                      =.+.-+.|++-|.-              +.|. ..-+.|+ ++|+-|.+-+...|....+.+-+++.
T Consensus       163 FRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ  229 (888)
T KOG3768         163 FRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQ  229 (888)
T ss_pred             CHHHHHHHEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHC
T ss_conf             0234312004675589998667550577777326677665317850355379999999999998644


No 51 
>pfam05762 VWA_CoxE VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA type domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.
Probab=97.74  E-value=0.00024  Score=44.54  Aligned_cols=130  Identities=15%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHH
Q ss_conf             674069985276311566787214898999998750023355553110479878863674178166655--878999997
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKI  244 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i  244 (371)
                      .|-.+++++|.||||..+       .......+..+...+.         ++-...|......+.+.-.  +..+....+
T Consensus        56 ~p~~lVvl~DVSGSM~~y-------s~~~L~~~~al~~~~~---------rv~~F~F~t~l~~vT~~l~~~d~~~al~~~  119 (223)
T pfam05762        56 KPRRLVLLLDVSGSMADY-------SRIFLALLHALLAGRP---------RTRLFAFGTRLTDLTRALRERDPAEALLRV  119 (223)
T ss_pred             CCCCEEEEECCCCCCHHH-------HHHHHHHHHHHHHCCC---------CCEEEEEECCHHHHHHHHHCCCHHHHHHHH
T ss_conf             987589997378874999-------9999999999985468---------615999836489888887128999999999


Q ss_pred             HCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             401--568874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r  245 NRL--IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       245 ~~l--~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      ...  ..+|||++..++........          ...-..+-++|+++||.++++.   .........++..+.+|+-+
T Consensus       120 ~~~~~~~~GgT~ig~al~~f~~~~~----------~~~l~~~t~ViilsDg~~~~~~---~~l~~~l~~L~~~~~rviWL  186 (223)
T pfam05762       120 SARVEDWGGGTRIGAALAYFNELWT----------RPALSRGAVVVLVSDGLERGDS---EELLAEVARLVRSARRLVWL  186 (223)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHCC----------CCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHHCCEEEEE
T ss_conf             9860366799749999999998503----------0346788679997230103883---18999999999837879998


Q ss_pred             EEC
Q ss_conf             941
Q gi|254780833|r  323 GVQ  325 (371)
Q Consensus       323 g~~  325 (371)
                      --.
T Consensus       187 NPl  189 (223)
T pfam05762       187 NPL  189 (223)
T ss_pred             CCC
T ss_conf             998


No 52 
>pfam06707 DUF1194 Protein of unknown function (DUF1194). This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.72  E-value=0.0031  Score=37.85  Aligned_cols=179  Identities=16%  Similarity=0.225  Sum_probs=101.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC----CCCCEEEEEEEEEECC--CCEEECCCCC--CHHH
Q ss_conf             740699852763115667872148989999987500233555----5311047987886367--4178166655--8789
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSI----PDVNNVVRSGLVTFSS--KIVQTFPLAW--GVQH  239 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~f~~--~~~~~~~lt~--~~~~  239 (371)
                      .+.+++.+|.|+||...      ....-++.+-..+..-...    ......+.+..+.|+.  ......||+.  +...
T Consensus         3 dlaLvLavDvS~SVD~~------E~~lQr~G~A~Al~dp~V~~Ai~~g~~g~Iava~~eWsg~~~q~~vv~Wt~I~~~~d   76 (206)
T pfam06707         3 DLALVLAVDVSGSVDEE------EYRLQREGYAAALRDPEVLDALLSGPHGRIAVTYVEWSGPDDQRVVVPWTLIDSAED   76 (206)
T ss_pred             HHHHHHHHHCCCCCCHH------HHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEECCEEECCHHH
T ss_conf             47786773323686999------999999999999759999999962899718999998027887448869989589999


Q ss_pred             HHHHHHCC-----CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99997401-----5688745642378899998742110123467776661699998404588888897899999999997
Q gi|254780833|r  240 IQEKINRL-----IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKR  314 (371)
Q Consensus       240 ~~~~i~~l-----~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~  314 (371)
                      ...+...+     ...+.|.+..++..+..+|....         .+-.+|+|=+=.||.||.+..+.   ...-+.+..
T Consensus        77 a~a~A~~i~~~~r~~~~~Taig~Al~~a~~l~~~~~---------~~~~RrvIDiSGDG~nN~G~~p~---~~ard~~~~  144 (206)
T pfam06707        77 AEAFAARLAAAPRRAGRRTAIGGALGFAAALLAQNP---------YECLRRVIDVSGDGPNNQGFPPV---TAARDAAVA  144 (206)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC---------CCCCEEEEEEECCCCCCCCCCCH---HHHHHHHHH
T ss_conf             999999997588788999769999999999998299---------87617999960799888999813---789876777


Q ss_pred             CCCEEEEEEECCCCC------HHHHHHHC--CCCEE-EEECCHHHHHHHH-HHHHHHHHH
Q ss_conf             898799999418642------79899833--89808-9828989999999-999996400
Q gi|254780833|r  315 RGAIVYAIGVQAEAA------DQFLKNCA--SPDRF-YSVQNSRKLHDAF-LRIGKEMVK  364 (371)
Q Consensus       315 ~gi~i~tIg~~~~~~------~~~l~~cA--s~~~~-y~~~~~~~L~~af-~~I~~~i~~  364 (371)
                      .||+|..+.++.+..      ....+.|.  ++|-| -.+.+.++..+++ +++-+||..
T Consensus       145 ~GitINgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~~df~~AirrKL~rEIag  204 (206)
T pfam06707       145 AGVTINGLAIMGAEAPTSDDLDAYYRDCVIGGPGAFVEPANGFEDFAEAIRRKLVREIAG  204 (206)
T ss_pred             CCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             592896677747898762369999973202389844997388799999999999998732


No 53 
>KOG1226 consensus
Probab=97.68  E-value=0.00051  Score=42.61  Aligned_cols=151  Identities=18%  Similarity=0.314  Sum_probs=90.6

Q ss_pred             EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-----------
Q ss_conf             221000134674069985276311566787214898999998750023355553110479878863674-----------
Q gi|254780833|r  158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-----------  226 (371)
Q Consensus       158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-----------  226 (371)
                      ........+.|+|+..++|.|.||..    ..++++.+...+...+..+...      .|.|.-+|-++           
T Consensus       122 ~l~~r~a~~yPVDLYyLMDlS~SM~D----Dl~~l~~LG~~L~~~m~~lT~n------frlGFGSFVDK~v~P~i~~~pe  191 (783)
T KOG1226         122 QLKVRQAEDYPVDLYYLMDLSYSMKD----DLENLKSLGTDLAREMRKLTSN------FRLGFGSFVDKTVSPYISTTPE  191 (783)
T ss_pred             EEEEEECCCCCEEEEEEEECCHHHHH----HHHHHHHHHHHHHHHHHHHHCC------CCCCCCCHHCCCCCCCCCCCCH
T ss_conf             99996035797037998613024565----6999999999999999987546------7766531112443541116807


Q ss_pred             -----------------CEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             -----------------178166655878999997401568874564237889999874211012346777666169999
Q gi|254780833|r  227 -----------------IVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF  289 (371)
Q Consensus       227 -----------------~~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl  289 (371)
                                       ..-+.+||++.....+.+.+-.-.|+-...+|   |+.++-.+..=....+ ...+..+.+||
T Consensus       192 kl~npc~~~~~C~ppfgfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEG---GfDAimQaavC~~~IG-WR~~a~~LLVF  267 (783)
T KOG1226         192 KLRNPCPNYKNCAPPFGFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEG---GFDAIMQAAVCTEKIG-WRNDATRLLVF  267 (783)
T ss_pred             HHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCEECCCCCCCCC---HHHHHHHHHHCCCCCC-CCCCCEEEEEE
T ss_conf             7538998744577985540021068876999998754353268898982---2988876641465522-01265168999


Q ss_pred             EECCCC--------------CCC--------------CCCHHHHHHHHHHHHHCCCE-EEEE
Q ss_conf             840458--------------888--------------88978999999999978987-9999
Q gi|254780833|r  290 LTDGEN--------------SSP--------------NIDNKESLFYCNEAKRRGAI-VYAI  322 (371)
Q Consensus       290 ~TDG~~--------------~~~--------------~~~~~~~~~~c~~~k~~gi~-i~tI  322 (371)
                      .||...              |++              ..++.....+...+.+++|. ||+|
T Consensus       268 ~td~~~H~a~DgkLaGiv~pnDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~IFAV  329 (783)
T KOG1226         268 STDAGFHFAGDGKLAGIVQPNDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINTIFAV  329 (783)
T ss_pred             ECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf             70751345115531258537887415687775120137777738999998766045347787


No 54 
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.58  E-value=0.0051  Score=36.57  Aligned_cols=189  Identities=15%  Similarity=0.201  Sum_probs=109.8

Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             2565443201122100013467406998527631156678721489899999875---0023355553110479878863
Q gi|254780833|r  147 NSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIRE---MLDIIKSIPDVNNVVRSGLVTF  223 (371)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f  223 (371)
                      ....+++.-+...++.++      +++++|.|.||..+.     ....+.+++..   .+..+..       -++++..|
T Consensus        45 rkDKIWLRRtkPsKR~Yq------I~lAiDdSkSM~~~~-----~~~lAlesl~lvs~Als~LEv-------G~l~V~~F  106 (266)
T cd01460          45 RKDKIWLRRTKPAKRDYQ------ILIAIDDSKSMSENN-----SKKLALESLCLVSKALTLLEV-------GQLGVCSF  106 (266)
T ss_pred             CCCCEEEEECCCCCCCEE------EEEEECCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHCC-------CCEEEEEC
T ss_conf             566357760477654258------999972603310104-----788999999999999987277-------65689984


Q ss_pred             CCCCEEECCCCCCHHH--HHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             6741781666558789--9999740156-887456423788999987421101234677766616999984045888888
Q gi|254780833|r  224 SSKIVQTFPLAWGVQH--IQEKINRLIF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI  300 (371)
Q Consensus       224 ~~~~~~~~~lt~~~~~--~~~~i~~l~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~  300 (371)
                      ...+....|+....+.  -...+..++. ...|++..-+......+.....     ...+.+..+.+++++||.......
T Consensus       107 Ge~v~~lh~f~~~f~~~~g~~il~~f~F~q~~T~v~~ll~~~~~~~~~a~~-----~~~~~~~~qL~lIiSDG~~~~~~~  181 (266)
T cd01460         107 GEDVQILHPFDEQFSSQSGPRILNQFTFQQDKTDIANLLKFTAQIFEDART-----QSSSGSLWQLLLIISDGRGEFSEG  181 (266)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCCCCCHHHEEEEEECCCCCCCCC
T ss_conf             887278622688765422799998398876776199999999999999752-----668756212799996898633530


Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCH-HH--HHHH--------------CC-C-CEEEEECCHHHHHHHHHHHHHH
Q ss_conf             978999999999978987999994186427-98--9983--------------38-9-8089828989999999999996
Q gi|254780833|r  301 DNKESLFYCNEAKRRGAIVYAIGVQAEAAD-QF--LKNC--------------AS-P-DRFYSVQNSRKLHDAFLRIGKE  361 (371)
Q Consensus       301 ~~~~~~~~c~~~k~~gi~i~tIg~~~~~~~-~~--l~~c--------------As-~-~~~y~~~~~~~L~~af~~I~~~  361 (371)
                      .   .......+.+++|-+-.|=+..+.+. ..  |++.              -+ | .+|--+.+.++|.+++..+-++
T Consensus       182 ~---~r~~vr~a~~~~i~~vfiIiD~~~~~~SIldmk~~~f~~~~~~~~~~YLd~FPFpyYvivrdi~~LP~~Lsd~LRQ  258 (266)
T cd01460         182 A---QKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALRQ  258 (266)
T ss_pred             H---HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf             6---8999999997697699999708988776331137777179840664724439986489976887808999999999


No 55 
>pfam04285 DUF444 Protein of unknown function (DUF444). Bacterial protein of unknown function. One family member is predicted to contain a von Willebrand factor (vWF) type A domain (Smart:VWA).
Probab=97.52  E-value=0.0062  Score=36.08  Aligned_cols=163  Identities=15%  Similarity=0.166  Sum_probs=88.6

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             69985276311566787214898999998750023355553110479878863674178166655878999997401568
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLIFG  250 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~~~  250 (371)
                      |++++|+||||+.      .+-..++....++..-+...+..-..+.+.-   ...+..+.-         ..-=....+
T Consensus       249 mfc~MDVSGSM~e------~~K~lAk~FfflLy~FL~r~Y~~VEvVFI~H---~t~AkEVdE---------e~FF~~~Es  310 (421)
T pfam04285       249 VFCLMDVSGSMGE------SEKDLAKRFFFLLYLFLTRKYENVEIVFIAH---HTEAKEVDE---------TDFFYKQES  310 (421)
T ss_pred             EEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE---CCCEEEECH---------HHHCCCCCC
T ss_conf             9999855768778------8999999999999999971578548999971---383478367---------993254898


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH-HHHHHCCCEEEEE-EECCCC
Q ss_conf             87456423788999987421101234677766616999984045888888978999999-9999789879999-941864
Q gi|254780833|r  251 STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYC-NEAKRRGAIVYAI-GVQAEA  328 (371)
Q Consensus       251 g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c-~~~k~~gi~i~tI-g~~~~~  328 (371)
                      |||-+..|+..+...+...-        +.....-|.+-.+||+|-..  ++.....++ +.+- .-++.|.- -+....
T Consensus       311 GGT~vSSal~l~~~II~~RY--------pp~~WNiY~f~aSDGDNw~~--D~~~c~~lL~~~ll-p~~~~f~Y~EI~~~~  379 (421)
T pfam04285       311 GGTIVSSALELALEIIDERY--------PPAEWNIYAFQASDGDNWTD--DSERCVKLLMNKLM-PNAQYYGYVEITQRR  379 (421)
T ss_pred             CCEEEEHHHHHHHHHHHHHC--------CHHHCEEEEEEECCCCCCCC--CHHHHHHHHHHHHH-HHHHEEEEEEECCCC
T ss_conf             97587279999999998558--------86445046798037766434--64999999999898-874158999945887


Q ss_pred             CHHHH---HHHC-CCCEE--EEECCHHHHHHHHHHHHHHH
Q ss_conf             27989---9833-89808--98289899999999999964
Q gi|254780833|r  329 ADQFL---KNCA-SPDRF--YSVQNSRKLHDAFLRIGKEM  362 (371)
Q Consensus       329 ~~~~l---~~cA-s~~~~--y~~~~~~~L~~af~~I~~~i  362 (371)
                      ....+   +... ...+|  ..+.+..+|-.+|++++.+-
T Consensus       380 ~~~~~~~y~~~~~~~~nf~~~~I~~k~dIypvfr~lf~ke  419 (421)
T pfam04285       380 SHSTWRKYEAVKGVKDNFAMYTIREKDDVYPVFRTLFQKE  419 (421)
T ss_pred             CCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             6527999998632489757999588888899999998643


No 56 
>PRK05325 hypothetical protein; Provisional
Probab=97.47  E-value=0.0072  Score=35.67  Aligned_cols=164  Identities=14%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             69985276311566787214898999998750023355553110479878863674178166655878999997401568
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLIFG  250 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~~~  250 (371)
                      |++++|+||||+.      .+-..++....++..-+...+..-.   +-.+.-...+..+.       + ..+ =....+
T Consensus       237 ~f~lMDvSGSM~~------~~K~lak~ff~lLy~fL~~~Y~~ve---vvFI~H~t~AkEVd-------E-e~F-F~~~es  298 (414)
T PRK05325        237 MFCLMDVSGSMDE------AEKDLAKRFFFLLYLFLRRKYENVE---VVFIRHHTEAKEVD-------E-EEF-FYSRES  298 (414)
T ss_pred             EEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHHHCCCEE---EEEEEECCCEEECC-------H-HHH-CCCCCC
T ss_conf             9999855667767------8999999999999999985157548---99997159426747-------8-983-155898


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH-HHHHHHHCCCEEEEE-EECCC-
Q ss_conf             874564237889999874211012346777666169999840458888889789999-999999789879999-94186-
Q gi|254780833|r  251 STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLF-YCNEAKRRGAIVYAI-GVQAE-  327 (371)
Q Consensus       251 g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~-~c~~~k~~gi~i~tI-g~~~~-  327 (371)
                      |||-+..|+..+...+...-        ......-|.+-.|||+|-...  +..... +...+.. -++.|.- -+... 
T Consensus       299 GGT~vSSa~~l~~eII~~rY--------pp~~WNIY~f~aSDGDNw~~D--~~~~~~~L~~~llp-~~~~f~Y~Ei~~~~  367 (414)
T PRK05325        299 GGTIVSSALKLMLEIIEERY--------PPAEWNIYAFQASDGDNWSDD--SPRCVELLVEELLP-VVNYFAYIEITPRA  367 (414)
T ss_pred             CCEEEEHHHHHHHHHHHHHC--------CHHHCEEEEEEECCCCCCCCC--HHHHHHHHHHHHHH-HHHEEEEEEEECCC
T ss_conf             98485089999999998548--------875652788991377675446--69999999998888-75368999971798


Q ss_pred             --CCHHHHHHH---CC-CCEE--EEECCHHHHHHHHHHHHHHHH
Q ss_conf             --427989983---38-9808--982898999999999999640
Q gi|254780833|r  328 --AADQFLKNC---AS-PDRF--YSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       328 --~~~~~l~~c---As-~~~~--y~~~~~~~L~~af~~I~~~i~  363 (371)
                        ....+++..   .. .++|  ..+.+..+|-.+|++++.+-.
T Consensus       368 ~~~~~~l~~~y~~~~~~~~~f~~~~I~~~~dI~p~fr~lf~k~~  411 (414)
T PRK05325        368 YYRHQTLWREYEKLQDEFDNFAMQHIRDKADIYPVFRELFKKEL  411 (414)
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             88756899999997554888679994888888999999985555


No 57 
>pfam09967 DUF2201 Predicted metallopeptidase (DUF2201). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=97.23  E-value=0.0013  Score=40.25  Aligned_cols=96  Identities=22%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHC--
Q ss_conf             406998527631156678721489899999875002335555311047987886367417816665587899999740--
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINR--  246 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~--  246 (371)
                      .++++++|.||||..      +.+......+...+....        ..+-++.|...++....+....    ..+..  
T Consensus       288 ~~i~v~iDTSGSis~------~~l~~flsEi~~I~~~~~--------~~i~vi~~D~~V~~~~~~~~~~----~~~~~~~  349 (412)
T pfam09967       288 PRLAVAIDTSGSISD------AELARFAAEIAAILRRTR--------AEVHVLACDEKVSSVQKFEPGD----SEISEVE  349 (412)
T ss_pred             CCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCC--------CCEEEEEECCEECCEEEECCCC----CCCCCCC
T ss_conf             557999969899889------999999999999998489--------9779999688856407863466----7644141


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             15688745642378899998742110123467776661699998404588888
Q gi|254780833|r  247 LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPN  299 (371)
Q Consensus       247 l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~  299 (371)
                      +.-+|||...+.+.|... +               . ...+|+||||+-+.+.
T Consensus       350 ~~GgGGTdf~pvf~~~~~-~---------------~-p~~~i~fTDG~g~~p~  385 (412)
T pfam09967       350 LTGGGGTDFRPVLEAALR-L---------------R-PDAAVVLTDLEGWPAG  385 (412)
T ss_pred             CCCCCCCCCHHHHHHHHH-C---------------C-CCEEEEEECCCCCCCC
T ss_conf             357899878489999982-6---------------9-9769998389989887


No 58 
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=96.97  E-value=0.024  Score=32.48  Aligned_cols=154  Identities=16%  Similarity=0.175  Sum_probs=88.1

Q ss_pred             CCCEEEEECCCCCCCCCC---------CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCC----
Q ss_conf             740699852763115667---------8721489899999875002335555311047987886367-41781666----
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHF---------GPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPL----  233 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~l----  233 (371)
                      .+++++.+|.+.|-++..         +........+..++...+..++.....+-+ -+|...-.. .....+|+    
T Consensus        31 einlivaIDFT~SNg~p~~~~SLHy~~~~~~N~Y~~aI~~vg~iL~~YD~Dk~~p~y-GFGa~~~~~~~~~~~~~~~~~~  109 (254)
T cd01459          31 ESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAF-GFGAIVTKDQSVFSFFPGYSES  109 (254)
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCCEEECCCCCCCCC
T ss_conf             885899997078689989998854589999899999999999998632778811301-1231139997573577799999


Q ss_pred             --CCC----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf             --558----78999997401568874564237889999874211012346777666169999840458888889789999
Q gi|254780833|r  234 --AWG----VQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLF  307 (371)
Q Consensus       234 --t~~----~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~  307 (371)
                        -.+    .+.-+..+..+..+|-|+..+-+..+.+.......         ..---+++++|||.-++    ..++..
T Consensus       110 p~~~G~~gvl~aY~~~l~~v~lsGPT~FapiI~~a~~~a~~~~~---------~~~Y~ILlIiTDG~i~D----~~~Ti~  176 (254)
T cd01459         110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNS---------QSKYHILLIITDGEITD----MNETIK  176 (254)
T ss_pred             CCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHCC---------CCEEEEEEEECCCCCCC----HHHHHH
T ss_conf             96559999999999860743764886059999999999997324---------87089999980796367----899999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             99999978987999994186427989983
Q gi|254780833|r  308 YCNEAKRRGAIVYAIGVQAEAADQFLKNC  336 (371)
Q Consensus       308 ~c~~~k~~gi~i~tIg~~~~~~~~~l~~c  336 (371)
                      ..-.+.+..+.|..||+|. ++=..|+..
T Consensus       177 aIv~AS~~PlSIIiVGVGd-~dF~~M~~l  204 (254)
T cd01459         177 AIVEASKYPLSIVIVGVGD-GPFDAMERL  204 (254)
T ss_pred             HHHHHCCCCEEEEEEEECC-CCHHHHHHH
T ss_conf             9999717981799997368-882778873


No 59 
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.92  E-value=0.027  Score=32.19  Aligned_cols=156  Identities=15%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCC-
Q ss_conf             0699852763115667872148989999987500233555531104798788636741781666558789999974015-
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLI-  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~-  248 (371)
                      -+++.+|.|.||....  ....++...=++..++..--..+      ...++.|...+..+.     .+++    -.+. 
T Consensus       465 AvallvDtS~SM~~eG--Rw~PmKQtALALhHLv~TrfrGD------~l~~i~Fgr~A~~v~-----v~eL----t~l~~  527 (652)
T COG4867         465 AVALLVDTSFSMVMEG--RWLPMKQTALALHHLVCTRFRGD------ALQIIAFGRYARTVT-----AAEL----TGLAG  527 (652)
T ss_pred             CEEEEEECCHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCC------EEEEEECCCCCCCCC-----HHHH----HCCCC
T ss_conf             2454341516777741--66716889999999998317886------058876043020177-----9998----24887


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC-------------CCHH---HHHHHHHH
Q ss_conf             -688745642378899998742110123467776661699998404588888-------------8978---99999999
Q gi|254780833|r  249 -FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPN-------------IDNK---ESLFYCNE  311 (371)
Q Consensus       249 -~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~-------------~~~~---~~~~~c~~  311 (371)
                       ...+||...++..+.+.|..           .+..+|.|+++|||+++.--             .++.   .+..-.++
T Consensus       528 v~eqgTNlhhaL~LA~r~l~R-----------h~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~  596 (652)
T COG4867         528 VYEQGTNLHHALALAGRHLRR-----------HAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDD  596 (652)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH-----------CCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             674555458899999999873-----------756576289983798630134789856616899877799898998888


Q ss_pred             HHHCCCEEEEEEECCCCC-HHHHHHHC--CCCEEEEECCHHHHHHH
Q ss_conf             997898799999418642-79899833--89808982898999999
Q gi|254780833|r  312 AKRRGAIVYAIGVQAEAA-DQFLKNCA--SPDRFYSVQNSRKLHDA  354 (371)
Q Consensus       312 ~k~~gi~i~tIg~~~~~~-~~~l~~cA--s~~~~y~~~~~~~L~~a  354 (371)
                      ....|++|-++-++.|.. ..++++.|  .+|..|.. +.+.|..+
T Consensus       597 ~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~p-dldglGaa  641 (652)
T COG4867         597 MARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVVP-DLDGLGAA  641 (652)
T ss_pred             HHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEC-CCCHHHHH
T ss_conf             8751641367752277768999999999858848813-82213589


No 60 
>pfam11443 DUF2828 Domain of unknown function (DUF2828). This is a uncharacterized domain found in eukaryotes and viruses.
Probab=96.85  E-value=0.031  Score=31.86  Aligned_cols=142  Identities=16%  Similarity=0.139  Sum_probs=82.5

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             40699852763115667872148989999987500233555531104798788636741781666558789999974015
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      -+++-|+|+||||.+... ....++.+... .-.+.+.+..+     .+--+.+|+..+.-+.--..+..+-.+.+....
T Consensus       327 ~n~iav~DvSGSM~g~~~-~~~p~~vai~L-gl~ise~~~~~-----fk~~~iTFs~~P~~~~l~g~~l~ekv~~~~~~~  399 (524)
T pfam11443       327 TNCIAVCDVSGSMSGPVF-SITPMDVCIAL-GLLVSELSEGP-----FKGKVITFSSNPQLHHIKGDSLREKVSFVRRMP  399 (524)
T ss_pred             CCEEEEEECCCCCCCCCC-CCCHHHHHHHH-HHHHHHHCCCC-----CCCCEEEECCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf             544899956877778888-88749999999-99999853500-----058189844997589707988999999999586


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC----CHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             6887456423788999987421101234677766616999984045888888----978999999999978987999994
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI----DNKESLFYCNEAKRRGAIVYAIGV  324 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~----~~~~~~~~c~~~k~~gi~i~tIg~  324 (371)
                      .+++|+....+..-........       -..++..|.|+++||=+..+...    ....-..++...++.|.++=-|=|
T Consensus       400 wg~nTnf~~vf~lIL~~av~~~-------l~~eempk~l~VfSDMqFD~a~~~~~~~~t~~e~i~~~f~~aGY~~P~IVF  472 (524)
T pfam11443       400 WGMSTNFQKVFDLILETAVENK-------LPQEDMPKRLFVFSDMEFDQASTGTSGWETDYEAIQRKFKEAGYEVPELVF  472 (524)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCC-------CCHHHCCCEEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             7635339999999999999869-------997886773899845423120379987623899999999983999983889


No 61 
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=96.79  E-value=0.0023  Score=38.66  Aligned_cols=82  Identities=16%  Similarity=0.324  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCH--------HHHHHHHHHHH-HCCCEEEEEEECC
Q ss_conf             42378899998742110123467776661699998404588888897--------89999999999-7898799999418
Q gi|254780833|r  256 TPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDN--------KESLFYCNEAK-RRGAIVYAIGVQA  326 (371)
Q Consensus       256 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~--------~~~~~~c~~~k-~~gi~i~tIg~~~  326 (371)
                      .+++.|+-+.|.           +.+.-+|++.+|+||.+-..++-.        .-.....+.+. ...|...+||++-
T Consensus       520 GEal~wah~rl~-----------gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeIEtrSpveLlAIGigh  588 (620)
T COG4547         520 GEALMWAHQRLI-----------GRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGH  588 (620)
T ss_pred             HHHHHHHHHHHH-----------CCHHHCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECCC
T ss_conf             199999999873-----------584241378883489855554345588607999999999997037840330331255


Q ss_pred             CCCHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             64279899833898089828989999999
Q gi|254780833|r  327 EAADQFLKNCASPDRFYSVQNSRKLHDAF  355 (371)
Q Consensus       327 ~~~~~~l~~cAs~~~~y~~~~~~~L~~af  355 (371)
                      |.-++.-|..+       .-+.++|.-++
T Consensus       589 DvtRyYrravt-------iVdaeeL~gam  610 (620)
T COG4547         589 DVTRYYRRAVT-------IVDAEELAGAM  610 (620)
T ss_pred             CCCHHHHHHEE-------EECHHHHCHHH
T ss_conf             53066662013-------74288856589


No 62 
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.75  E-value=0.037  Score=31.40  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             CEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCE----------EECCCCC-CH
Q ss_conf             069985276311566787-21489899999875002335555311047987886367417----------8166655-87
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGP-GMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIV----------QTFPLAW-GV  237 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----------~~~~lt~-~~  237 (371)
                      .++|++|.|.||-..... ....+..+.+.+..++...   -.......+|++-|+..-.          ...+|.. +.
T Consensus         3 ~ivflID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~k---iis~~~d~vGvv~~~T~~~~n~~~~~~i~vl~~l~~~~a   79 (218)
T cd01458           3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSK---IISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGA   79 (218)
T ss_pred             EEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH---EECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCH
T ss_conf             79999979977847767888883999999999999865---067899869999976788888789872699633887677


Q ss_pred             HHHHHHHHCCCC-----------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC--HHH
Q ss_conf             899999740156-----------8874564237889999874211012346777666169999840458888889--789
Q gi|254780833|r  238 QHIQEKINRLIF-----------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID--NKE  304 (371)
Q Consensus       238 ~~~~~~i~~l~~-----------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~--~~~  304 (371)
                      ..++....-+..           .+......++..+.+++...         ......|-|+|+||.++-.+...  ..+
T Consensus        80 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~f~~~---------~~~~~~krI~lfTdnD~P~~~~~~~~~~  150 (218)
T cd01458          80 ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKG---------KKKKSHKRIFLFTNNDDPHGGDSIKDSQ  150 (218)
T ss_pred             HHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---------CCCCCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf             9999999986010235566448888867999999999999855---------5345777799986899899988799999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCC---C-HHHHHHHC
Q ss_conf             999999999789879999941864---2-79899833
Q gi|254780833|r  305 SLFYCNEAKRRGAIVYAIGVQAEA---A-DQFLKNCA  337 (371)
Q Consensus       305 ~~~~c~~~k~~gi~i~tIg~~~~~---~-~~~l~~cA  337 (371)
                      +...+..+++.||.|-.+.+..+.   + ..+.+.+-
T Consensus       151 a~~~a~DL~d~gI~iel~~l~~~~~~Fd~s~FY~dii  187 (218)
T cd01458         151 AAVKAEDLKDKGIELELFPLSSPGKKFDVSKFYKDII  187 (218)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             9999988987796899984489988688067788752


No 63 
>pfam07811 TadE TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=96.55  E-value=0.0085  Score=35.23  Aligned_cols=42  Identities=19%  Similarity=0.421  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             718999999999999999999999999999999999999999
Q gi|254780833|r   15 GSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSL   56 (371)
Q Consensus        15 G~vai~~al~l~~li~~~g~aVD~~r~~~~ks~Lq~a~DaA~   56 (371)
                      |+.+|=|++++|+++.+....+|++++...+..++.|+..++
T Consensus         1 G~a~VEfalv~p~~l~l~~~~~~~~~~~~~~~~~~~Aa~~aa   42 (43)
T pfam07811         1 GAAAVEFALVLPVLLLLLFGIVELGRLFYARQVLQNAAREAA   42 (43)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             916999999999999999999999999999999999998674


No 64 
>KOG1327 consensus
Probab=96.47  E-value=0.057  Score=30.25  Aligned_cols=152  Identities=17%  Similarity=0.154  Sum_probs=87.5

Q ss_pred             CCCCEEEEECCCCCCCCCCC---------CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC------CEEEC
Q ss_conf             67406998527631156678---------7214898999998750023355553110479878863674------17816
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFG---------PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK------IVQTF  231 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------~~~~~  231 (371)
                      ..++..+.+|.+.|-++...         .....+..|...+...+..++....      +..+-|...      ..-.+
T Consensus       284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~------fpa~GFGakip~~~~vs~~f  357 (529)
T KOG1327         284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKL------FPAFGFGAKIPPDGQVSHEF  357 (529)
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC------CCCCCCCCCCCCCCCCCCCE
T ss_conf             566169999971247899999752452788998899999997134105587776------42345466579986524202


Q ss_pred             CCC--------CC----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             665--------58----789999974015688745642378899998742110123467776661699998404588888
Q gi|254780833|r  232 PLA--------WG----VQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPN  299 (371)
Q Consensus       232 ~lt--------~~----~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~  299 (371)
                      .|.        ..    ...-+..+..+.+.|.|+..+-+..+.+.......        ...---+++++|||.-++  
T Consensus       358 ~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~--------~~~qY~VLlIitDG~vTd--  427 (529)
T KOG1327         358 VLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN--------TAGQYHVLLIITDGVVTD--  427 (529)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC--------CCCCEEEEEEEECCCCCC--
T ss_conf             2037889985434788999998645664205887618999999999997256--------786249999993782344--


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC
Q ss_conf             89789999999999789879999941864279899833
Q gi|254780833|r  300 IDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA  337 (371)
Q Consensus       300 ~~~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA  337 (371)
                        ...+....-.|-.....|..||+| +.+-+.|+..=
T Consensus       428 --m~~T~~AIV~AS~lPlSIIiVGVG-d~df~~M~~lD  462 (529)
T KOG1327         428 --MKETRDAIVSASDLPLSIIIVGVG-DADFDMMRELD  462 (529)
T ss_pred             --HHHHHHHHHHHCCCCEEEEEEEEC-CCCHHHHHHHH
T ss_conf             --889999998631598079999737-97878999750


No 65 
>TIGR01651 CobT cobaltochelatase, CobT subunit; InterPro: IPR006538   These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised , . Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO).   Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively . CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) .   Nomenclature note: CobT of the aerobic pathway Pseudomonas denitrificans is not a homolog of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous. .
Probab=96.37  E-value=0.0089  Score=35.11  Aligned_cols=140  Identities=18%  Similarity=0.206  Sum_probs=71.9

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE--ECCCC----------
Q ss_conf             069985276311566787214898999---998750023355553110479878863674178--16665----------
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVAT---RSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ--TFPLA----------  234 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~lt----------  234 (371)
                      -|.++||+||||.+.      .|.++.   +.+-.-++.+...-++     .|+++-.|+...  .-+|.          
T Consensus       400 VVTLliDNSGSMRGR------PI~VAA~CADILARTLERCGV~~Ei-----LGFTTrAWKGG~sR~~Wl~~GKP~aPGRL  468 (606)
T TIGR01651       400 VVTLLIDNSGSMRGR------PITVAATCADILARTLERCGVKVEI-----LGFTTRAWKGGQSREKWLKAGKPAAPGRL  468 (606)
T ss_pred             EEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHCCCEEEE-----CCCCCCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf             788877467887881------4788988898987666417730675-----25401455788648999737787777842


Q ss_pred             CCHHHHHHHH-HC----------CCCCCC---CCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             5878999997-40----------156887---456-42378899998742110123467776661699998404588888
Q gi|254780833|r  235 WGVQHIQEKI-NR----------LIFGST---TKS-TPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPN  299 (371)
Q Consensus       235 ~~~~~~~~~i-~~----------l~~~g~---T~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~  299 (371)
                      +|...+...- +.          |....|   -|+ .+++.|+-+-|..           .+.-+|++.+++||.|-+.+
T Consensus       469 NDLRHIiYKsAD~PWRRARrNLGLMMREGLLKENIDGEAL~WAH~RliA-----------R~EQRrILM~ISDGAPVDDS  537 (606)
T TIGR01651       469 NDLRHIIYKSADAPWRRARRNLGLMMREGLLKENIDGEALLWAHERLIA-----------RPEQRRILMMISDGAPVDDS  537 (606)
T ss_pred             CHHHHHHHHCCCCCHHHHHHHCCHHHHHCCHHCCCCHHHHHHHHHHHHC-----------CHHHCEEEEEEECCCCCCCC
T ss_conf             0234575321687146777512325541200105646799988666414-----------72047587776278886645


Q ss_pred             CCH--------HHHHHHHHHHH-HCCCEEEEEEECCCCCHH
Q ss_conf             897--------89999999999-789879999941864279
Q gi|254780833|r  300 IDN--------KESLFYCNEAK-RRGAIVYAIGVQAEAADQ  331 (371)
Q Consensus       300 ~~~--------~~~~~~c~~~k-~~gi~i~tIg~~~~~~~~  331 (371)
                      +-.        .-.....+.+- ...|+..+||+|-|.-++
T Consensus       538 TLSVN~G~YLERHLR~VI~~IEtrSPVELlAIGIGHDVTRY  578 (606)
T TIGR01651       538 TLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHDVTRY  578 (606)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCE
T ss_conf             23547850678999999986237787000232344342200


No 66 
>pfam07002 Copine Copine. This family represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca(2+)-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth.
Probab=96.14  E-value=0.087  Score=29.15  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCH------------HHHHHHHHCCCCCCCCCCC
Q ss_conf             1489899999875002335555311047987886367417816665587------------8999997401568874564
Q gi|254780833|r  189 MDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGV------------QHIQEKINRLIFGSTTKST  256 (371)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~------------~~~~~~i~~l~~~g~T~~~  256 (371)
                      ......+..++...+..++.....+-+-..+..+......-++||+.+.            +.-+..+..+...|-|+..
T Consensus        10 ~N~Y~~AI~~vg~il~~YD~Dk~~p~yGFGa~~~~~~~vsh~F~ln~~~~~p~~~G~~gvl~aY~~~~~~v~l~gPT~fa   89 (145)
T pfam07002        10 PNPYEQAIRIVGEILQPYDSDKRFPAFGFGARLPPDYEVSHDFPLNFNPENPECNGIEGVLNAYREALPNLQLSGPTNFA   89 (145)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCHH
T ss_conf             88999999999999872689881365435556699986330123568989997669999999999985810654875279


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r  257 PGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                      +-++.+.+......         ...--.+++++|||+-+    +...+....-.+-+..+.|-.||+|
T Consensus        90 piI~~a~~~a~~~~---------~~~~Y~VLlIiTDG~i~----D~~~Ti~aIv~AS~~PlSIIiVGVG  145 (145)
T pfam07002        90 PIIDAAARIAEATQ---------KSGQYHVLLIITDGQVT----DMKATIDAIVRASHLPLSIIIVGVG  145 (145)
T ss_pred             HHHHHHHHHHHHHC---------CCCEEEEEEEECCCCCC----CHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             99999999999722---------37718999996389735----6999999999982799279999519


No 67 
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=96.02  E-value=0.099  Score=28.80  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHH---HHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CEEECCCCCCHHHHHH
Q ss_conf             6740699852763115667872148---98999998750023355553110479878863674-1781666558789999
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDK---LGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-IVQTFPLAWGVQHIQE  242 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~lt~~~~~~~~  242 (371)
                      .--.+.+++|.|.+|.....-+..+   ++.+.+.+-+++++...       .+++++.-.+. +.....+.-|...-..
T Consensus        86 IiRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPi-------Sqlsii~irdg~a~~~s~~~gnpq~hi~  158 (421)
T COG5151          86 IIRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPI-------SQLSIISIRDGCAKYTSSMDGNPQAHIG  158 (421)
T ss_pred             HHHEEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC-------HHEEEEEHHHHHHHHHHHCCCCHHHHHH
T ss_conf             021057888735444332036058888999998776887525970-------0324433354688876534799899998


Q ss_pred             HHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             974015-6887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r  243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       243 ~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .+..+. ..|+-....|++.+.-.|.+.         ..-.++.++|++..=.-    .++....+..+.+...+|+|..
T Consensus       159 ~lkS~rd~~gnfSLqNaLEmar~~l~~~---------~~H~trEvLiifgS~st----~DPgdi~~tid~Lv~~~IrV~~  225 (421)
T COG5151         159 QLKSKRDCSGNFSLQNALEMARIELMKN---------TMHGTREVLIIFGSTST----RDPGDIAETIDKLVAYNIRVHF  225 (421)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHCCC---------CCCCCEEEEEEEEECCC----CCCCCHHHHHHHHHHHCEEEEE
T ss_conf             7501004688853776887766540345---------45562279999842155----8974189999998750527999


Q ss_pred             EEECCCCCHHHHHH-H-CC----CCEEEEECCHHHHHHHHHHH
Q ss_conf             99418642798998-3-38----98089828989999999999
Q gi|254780833|r  322 IGVQAEAADQFLKN-C-AS----PDRFYSVQNSRKLHDAFLRI  358 (371)
Q Consensus       322 Ig~~~~~~~~~l~~-c-As----~~~~y~~~~~~~L~~af~~I  358 (371)
                      ||+.....  .-+. | |+    .+.||..-+..-|.+.|.+.
T Consensus       226 igL~aeva--icKeickaTn~~~e~~y~v~vde~Hl~el~~E~  266 (421)
T COG5151         226 IGLCAEVA--ICKEICKATNSSTEGRYYVPVDEGHLSELMREL  266 (421)
T ss_pred             EEEHHHHH--HHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC
T ss_conf             75015899--999998614767675067660478899999862


No 68 
>KOG2884 consensus
Probab=95.96  E-value=0.11  Score=28.62  Aligned_cols=170  Identities=15%  Similarity=0.148  Sum_probs=109.3

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCCCCCHHHHHHHHHCCC
Q ss_conf             06998527631156678721489899999875002335555311047987886367-41781666558789999974015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      ..++.+|+|.-|..... ..+|+..-++++......-   ...+.-..+|+.+-.. .+.....+|.+...+......+.
T Consensus         5 atmi~iDNse~mrNgDy-~PtRf~aQ~daVn~v~~~K---~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~   80 (259)
T KOG2884           5 ATMICIDNSEYMRNGDY-LPTRFQAQKDAVNLVCQAK---LRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQ   80 (259)
T ss_pred             EEEEEEECHHHHHCCCC-CHHHHHHHHHHHHHHHHHH---HCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHCCCC
T ss_conf             27999847677624897-7188898899999998755---0279543154686368985044303430048987732778


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             68874564237889999874211012346777666-16999984045888888978999999999978987999994186
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY-KKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      +.|.-+...|++-+--.|...         .+++. .++++|+  |.+-.  ....+...+...+|..+|.|-.|-||..
T Consensus        81 ~~g~~~~~~~i~iA~lalkhR---------qnk~~~~riVvFv--GSpi~--e~ekeLv~~akrlkk~~Vaidii~FGE~  147 (259)
T KOG2884          81 PHGKANFMTGIQIAQLALKHR---------QNKNQKQRIVVFV--GSPIE--ESEKELVKLAKRLKKNKVAIDIINFGEA  147 (259)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH---------CCCCCCEEEEEEE--CCCCH--HHHHHHHHHHHHHHHCCEEEEEEEECCC
T ss_conf             577612888899999998710---------3888636999993--68322--3389999999998754802789872434


Q ss_pred             CCH-HHHHHH----C---CCCEEEEECCHHHHHHHHH
Q ss_conf             427-989983----3---8980898289899999999
Q gi|254780833|r  328 AAD-QFLKNC----A---SPDRFYSVQNSRKLHDAFL  356 (371)
Q Consensus       328 ~~~-~~l~~c----A---s~~~~y~~~~~~~L~~af~  356 (371)
                      .+. ..|...    -   ++.|...+....-|.++..
T Consensus       148 ~~~~e~l~~fida~N~~~~gshlv~Vppg~~L~d~l~  184 (259)
T KOG2884         148 ENNTEKLFEFIDALNGKGDGSHLVSVPPGPLLSDALL  184 (259)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH
T ss_conf             3337889999998538988744898589840777764


No 69 
>TIGR02877 spore_yhbH sporulation protein YhbH; InterPro: IPR014230   Proteins in this entry, typified by YhbH from Bacillus subtilis, are found in the genomes of nearly every endospore-forming bacterium, and in no other genomes. The gene in Bacillus subtilis was shown to be a member of the sigma-E regulon, with mutation leading to a sporulation defect ..
Probab=95.89  E-value=0.075  Score=29.51  Aligned_cols=115  Identities=16%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             06998527631156678721489899999875002335555311047987886367417816665587899999740156
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLIF  249 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~~  249 (371)
                      -|+.++|.||||+..     .| =.|+..+-++..-+...+..   +.+..++=.+.+..+.--.        + =..--
T Consensus       216 Vvi~mMDtSGSMg~~-----kK-YiARSfFFw~~kFlr~KY~~---VeI~FisH~TeAkEV~Ee~--------F-F~kgE  277 (392)
T TIGR02877       216 VVIAMMDTSGSMGEF-----KK-YIARSFFFWMVKFLRTKYEN---VEIVFISHHTEAKEVTEEE--------F-FTKGE  277 (392)
T ss_pred             EEEEEECCCCCCCCC-----HH-HHHHHHHHHHHHHHHHEEEE---EEEEEEEECCCCEEECHHH--------C-CCCCC
T ss_conf             777764478898873-----16-78888999999886320014---7899971045212401666--------0-13256


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH-HHHHHHHH
Q ss_conf             8874564237889999874211012346777666169999840458888889789-99999999
Q gi|254780833|r  250 GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKE-SLFYCNEA  312 (371)
Q Consensus       250 ~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~-~~~~c~~~  312 (371)
                      +|||.+..|.+.|++.+...-.+..++        =|-+-++||+|=..  ++.+ +..+...+
T Consensus       278 SGGT~~SS~Y~~ALeiI~~RYnP~~yN--------iY~FHfSDGDNl~~--Dn~Rlav~l~~~L  331 (392)
T TIGR02877       278 SGGTRCSSAYKLALEIIDERYNPARYN--------IYAFHFSDGDNLSS--DNERLAVKLVRKL  331 (392)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCC--------CCCCEEECCCCCCC--CCHHHHHHHHHHH
T ss_conf             677430167889999974278831006--------56535533778898--8646899999999


No 70 
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.70  E-value=0.14  Score=27.96  Aligned_cols=143  Identities=16%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674178166655878999997
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKI  244 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i  244 (371)
                      .+.|  ++.-+|.||||.+.    .+.+..+  .+..++..... .    .-..-++.|+.... ...|+. ...+...+
T Consensus       319 ~kGP--~IvCVDTSGSM~G~----pE~~AKA--~~Lal~r~Al~-e----~R~CyvI~FSte~~-t~eLt~-~~gl~~l~  383 (484)
T PRK10997        319 PRGP--FIVCVDTSGSMGGF----NEQCAKA--FCLALMRIALA-E----NRRCYIMLFSTEVI-TYELSG-PDGLEQAI  383 (484)
T ss_pred             CCCC--EEEEEECCCCCCCC----HHHHHHH--HHHHHHHHHHH-C----CCCEEEEEECCCEE-EEEECC-CCCHHHHH
T ss_conf             7899--79999588888997----6889999--99999999996-2----89879998126517-898048-78879999


Q ss_pred             HCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-HHHCCCEEEE
Q ss_conf             401--5688745642378899998742110123467776661699998404588888897899999999-9978987999
Q gi|254780833|r  245 NRL--IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNE-AKRRGAIVYA  321 (371)
Q Consensus       245 ~~l--~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~-~k~~gi~i~t  321 (371)
                      +-|  ..+|||...+++..+...+......       ..    =++++||-.-..-  + .....-+.. -|+.+=++|+
T Consensus       384 ~FL~~sF~GGTD~~~~L~~~l~~m~~~~y~-------~A----DllvISDFIa~~l--p-~~l~~kv~~lqk~~~nrFha  449 (484)
T PRK10997        384 RFLSQSFRGGTDLAPCLRAIIEKMQGREWF-------DA----DAVVISDFIAQRL--P-DELVAKVKELQRVHQHRFHA  449 (484)
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHHHCCCC-------CC----CEEEECHHCCCCC--C-HHHHHHHHHHHHHHCCCEEE
T ss_conf             985288889845799999999986232446-------58----8799712206569--9-99999999999850683588


Q ss_pred             EEECCCCCHHHHHHH
Q ss_conf             994186427989983
Q gi|254780833|r  322 IGVQAEAADQFLKNC  336 (371)
Q Consensus       322 Ig~~~~~~~~~l~~c  336 (371)
                      |..+.-+...+|+.-
T Consensus       450 v~is~~g~p~~m~iF  464 (484)
T PRK10997        450 VAMSAHGKPGIMRIF  464 (484)
T ss_pred             EECCCCCCHHHHHHH
T ss_conf             840123585799997


No 71 
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113   6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket .    This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=95.52  E-value=0.036  Score=31.48  Aligned_cols=46  Identities=20%  Similarity=0.325  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEEECCCCC--C-------------------CCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             76661699998404588--8-------------------8889789999999999789879999941
Q gi|254780833|r  280 HDDYKKYIIFLTDGENS--S-------------------PNIDNKESLFYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       280 ~~~~~k~ivl~TDG~~~--~-------------------~~~~~~~~~~~c~~~k~~gi~i~tIg~~  325 (371)
                      -++|+|+|++++-|.+.  +                   ||+..+.+..-|++++++||.+--+|++
T Consensus        61 Le~PRKImLMVkAG~pVdaD~~I~~L~P~LE~GDiIIDGGNS~Y~DT~RR~~eL~~~Gi~FvG~GvS  127 (480)
T TIGR00873        61 LERPRKIMLMVKAGAPVDADAVINSLLPLLEKGDIIIDGGNSHYKDTERRYKELKAKGILFVGVGVS  127 (480)
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             0688728887753885377899999644358998887588788466578999998649816730132


No 72 
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=95.37  E-value=0.18  Score=27.25  Aligned_cols=165  Identities=14%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             69985276311566787214898999998750023355553110479878863674178166655878999997401568
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLIFG  250 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~~~  250 (371)
                      ++-++|+||||+..      .-+.+++....+.-.+...+.....+.+.--+-.+.+....            -=.-..+
T Consensus       249 mfclMDvSGSM~~~------~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~EVdE~d------------FF~~~es  310 (423)
T COG2718         249 MFCLMDVSGSMDQS------EKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAKEVDETD------------FFYSQES  310 (423)
T ss_pred             EEEEEECCCCCCHH------HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEECCHHH------------CEEECCC
T ss_conf             99977457774467------89999999999999984440025899996037431423224------------0232478


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-ECCCCC
Q ss_conf             8745642378899998742110123467776661699998404588888897899999999997898799999-418642
Q gi|254780833|r  251 STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG-VQAEAA  329 (371)
Q Consensus       251 g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg-~~~~~~  329 (371)
                      |||-+..+++.+.+.+...-+        -....-|.+-.+||+|-.+...  ....+..+---..++.|+-+ +-....
T Consensus       311 GGTivSSAl~~m~evi~ErYp--------~aeWNIY~fqaSDGDN~~dDse--rc~~ll~~~im~~~~~y~Y~Eitq~~~  380 (423)
T COG2718         311 GGTIVSSALKLMLEVIKERYP--------PAEWNIYAFQASDGDNWADDSE--RCVELLAKKLMPVVQYYGYIEITQRRT  380 (423)
T ss_pred             CCEEEHHHHHHHHHHHHHHCC--------HHHEEEEEEEECCCCCCCCCCH--HHHHHHHHHHHHHHHHEEEEEEEECCC
T ss_conf             976868899999999970388--------5350255454057766568778--899999999998633438874200243


Q ss_pred             HHHH--HHHCC-CCE--EEEECCHHHHHHHHHHHHHHHH
Q ss_conf             7989--98338-980--8982898999999999999640
Q gi|254780833|r  330 DQFL--KNCAS-PDR--FYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       330 ~~~l--~~cAs-~~~--~y~~~~~~~L~~af~~I~~~i~  363 (371)
                      ...|  +..-. -++  ++...+.+++--+|++++.+-.
T Consensus       381 H~t~~y~~~~~~~dnFa~~~I~~~~Diypvfr~lf~ke~  419 (423)
T COG2718         381 HQTLEYEALQGVFDNFAMQTIREPDDIYPVFRELFSKEL  419 (423)
T ss_pred             CHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHHCCC
T ss_conf             112433444335753130340677877999999984140


No 73 
>pfam03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain. The Ku heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold.
Probab=94.43  E-value=0.32  Score=25.73  Aligned_cols=186  Identities=15%  Similarity=0.146  Sum_probs=94.2

Q ss_pred             EEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------EEECCCCC-CHH
Q ss_conf             6998527631156678721-48989999987500233555531104798788636741----------78166655-878
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGM-DKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------VQTFPLAW-GVQ  238 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------~~~~~lt~-~~~  238 (371)
                      ++|++|.|.+|.....+.. ..+..+.+.+...+...-..   .....+|++-|+..-          +...+|.. +..
T Consensus         2 vvf~ID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~kIis---~~kD~vGvv~~~T~~~~n~~~~~ni~vl~~l~~p~a~   78 (222)
T pfam03731         2 TVFLIDASPAMFESVKGLEASPFEQALKCIDEILSRKIIS---NDKDLIGVVLYGTDESENSEGFENVTVLRDLDLPGAE   78 (222)
T ss_pred             EEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEC---CCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf             7999979988868788998783999999999999877137---8998588999705677776788606985057887889


Q ss_pred             HHH---HHHHC-------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH---H
Q ss_conf             999---99740-------1568874564237889999874211012346777666169999840458888889789---9
Q gi|254780833|r  239 HIQ---EKINR-------LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKE---S  305 (371)
Q Consensus       239 ~~~---~~i~~-------l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~---~  305 (371)
                      .++   ..+..       ...........++..+.+++...       .......+|-|+|+||.++-.+..+..+   .
T Consensus        79 ~ik~L~~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~-------~~~~k~~~krI~LfTdnD~P~~~~~~~~~~~~  151 (222)
T pfam03731        79 LLKELDQFLEPLADVFGFNGDSSDGDLLSALWVCMDLLQKQ-------TGKKKLSKKRILLFTNLDDPFEDDDQLDTIRQ  151 (222)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-------HCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             99999998510344441168977664888999999998851-------03434578679998999989887517789999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHC---CC--CEEEEECCHHHHHHHHHHHHHHHHHEE
Q ss_conf             999999997898799999418642---79899833---89--808982898999999999999640007
Q gi|254780833|r  306 LFYCNEAKRRGAIVYAIGVQAEAA---DQFLKNCA---SP--DRFYSVQNSRKLHDAFLRIGKEMVKQR  366 (371)
Q Consensus       306 ~~~c~~~k~~gi~i~tIg~~~~~~---~~~l~~cA---s~--~~~y~~~~~~~L~~af~~I~~~i~~~~  366 (371)
                      ...+..+.+.||.|-.+.++.+..   ..+.+.+-   +.  ..+.....++.+.+....|-.+....|
T Consensus       152 ~~~a~Dl~d~gi~i~lf~i~~~~~f~~~~FY~dii~~~~~~~~~~~~~~~~~~l~~l~~~i~~k~~~kR  220 (222)
T pfam03731       152 KLLAEDLRDEGIEFNLIHLPNSGGFDPNIFYKEIIKLGEDEENEVMLDLEGEKLEDLLSRLRAKQTAKR  220 (222)
T ss_pred             HHHHCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             998523787497799961498888877788886426776434566777303169999999974303565


No 74 
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=93.91  E-value=0.35  Score=25.46  Aligned_cols=119  Identities=12%  Similarity=0.082  Sum_probs=57.4

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHH
Q ss_conf             4674069985276311566787214898999998750023355553110479878863674178166655--87899999
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEK  243 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~  243 (371)
                      ..+-.+++.+|+||||.+++.-    .--...++....            .++-.-.|.+..+.+++.-.  +.......
T Consensus       216 ~~~~~lvvL~DVSGSm~~ys~~----~L~l~hAl~q~~------------~R~~~F~F~TRLt~vT~~l~~rD~~~Al~~  279 (395)
T COG3552         216 RRKPPLVVLCDVSGSMSGYSRI----FLHLLHALRQQR------------SRVHVFLFGTRLTRVTHMLRERDLEDALRR  279 (395)
T ss_pred             CCCCCEEEEEECCCCHHHHHHH----HHHHHHHHHHCC------------CCEEEEEEECHHHHHHHHHCCCCHHHHHHH
T ss_conf             6899859998346634566999----999999998522------------660599730158777887624899999999


Q ss_pred             HHCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7401--568874564237889999874211012346777666169999840458888889789999999999
Q gi|254780833|r  244 INRL--IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAK  313 (371)
Q Consensus       244 i~~l--~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k  313 (371)
                      +..-  .-.|+|.+...+    ..+...|....      -...-+++++|||.+.++..   ........+.
T Consensus       280 ~~a~v~dw~ggTrig~tl----~aF~~~~~~~~------L~~gA~VlilsDg~drd~~~---~l~~~~~rl~  338 (395)
T COG3552         280 LSAQVKDWDGGTRIGNTL----AAFLRRWHGNV------LSGGAVVLILSDGLDRDDIP---ELVTAMARLR  338 (395)
T ss_pred             HHHHCCCCCCCCCHHHHH----HHHHCCCCCCC------CCCCEEEEEEECCCCCCCCH---HHHHHHHHHH
T ss_conf             986411335776234899----99971544445------57861799970542247815---7999999999


No 75 
>COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]
Probab=92.66  E-value=0.48  Score=24.65  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=20.1

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             5788752036871899999999999
Q gi|254780833|r    4 LNIRNFFYNCKGSISILTAILLPVI   28 (371)
Q Consensus         4 ~~l~~f~~d~~G~vai~~al~l~~l   28 (371)
                      ..++||+|||+|.-+|=-+|+...+
T Consensus         3 ~~~~rF~rDE~GAtaiEYglia~lI   27 (58)
T COG3847           3 KLLRRFLRDEDGATAIEYGLIAALI   27 (58)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             7899997745651899999999999


No 76 
>pfam11265 Med25_VWA Mediator complex subunit 25 von Willebrand factor type A. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex.
Probab=92.56  E-value=0.66  Score=23.81  Aligned_cols=162  Identities=15%  Similarity=0.062  Sum_probs=89.2

Q ss_pred             CCEEEEECCCCCCCCCCCCCH-HHHHHHHHHHH-HHCCCCCCCCCCCEEEEEEEEEECCCC------EEECCCCCCHHHH
Q ss_conf             406998527631156678721-48989999987-500233555531104798788636741------7816665587899
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGM-DKLGVATRSIR-EMLDIIKSIPDVNNVVRSGLVTFSSKI------VQTFPLAWGVQHI  240 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~------~~~~~lt~~~~~~  240 (371)
                      -|++||+..+.-|+.+|..-. +.+....+.+. .-++..+... -...++++++.|....      ....+++.+...+
T Consensus         6 ~dvVfviEgTA~~g~y~~~lkt~Yi~p~ieyF~~g~~~~~~~~~-~~~~~~y~LVvf~t~~~~p~~~~q~~gpt~~~~~f   84 (219)
T pfam11265         6 KDVVFVIEGTANLGPYFETLKTDYILPIIEYFNGGPLAETDFGG-EYGGTQYSLVVFNTHASYPECLVQRSGPTRDVDEF   84 (219)
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHCCCCCCHHHH
T ss_conf             04899995543452128999887689999986189965332356-67884589999604687762366606885899999


Q ss_pred             HHHHHCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC--CH----HHHHHHH
Q ss_conf             9997401568874-----56423788999987421101234677766616999984045888888--97----8999999
Q gi|254780833|r  241 QEKINRLIFGSTT-----KSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI--DN----KESLFYC  309 (371)
Q Consensus       241 ~~~i~~l~~~g~T-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~--~~----~~~~~~c  309 (371)
                      ...++++...||-     ++.+|+..+...+.+-....  ...+..+.+|+=||+.--.+-.-..  .+    ....++.
T Consensus        85 l~~Ld~i~f~GGG~es~A~iaEGLa~ALq~Fdd~~~~r--~~~~~~~~qkhCILIcnSpPy~lP~~e~~~y~g~t~dqla  162 (219)
T pfam11265        85 LQWLSSIPFMGGGFESCALIAEGLAEALQMFDDFSKMR--QQQGQTDVHRHCILICNSPPYPLPTVESWQYEGKTSDQLA  162 (219)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf             99997350167871466889989999998731366516--4689887530489996899976865120434387689999


Q ss_pred             HHHH--HCCCEEEEEEECCCCCHHHHHHH
Q ss_conf             9999--78987999994186427989983
Q gi|254780833|r  310 NEAK--RRGAIVYAIGVQAEAADQFLKNC  336 (371)
Q Consensus       310 ~~~k--~~gi~i~tIg~~~~~~~~~l~~c  336 (371)
                      ..+.  +++|.+..|.   +..-+.|+.+
T Consensus       163 ~~~~f~e~~i~lSIis---PRklP~L~~l  188 (219)
T pfam11265       163 AAINFAERSISLSIIC---PRKLPALRLL  188 (219)
T ss_pred             HHHCCCCCCEEEEEEC---CCCCHHHHHH
T ss_conf             8741200462589976---4304899999


No 77 
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.39  E-value=0.47  Score=24.70  Aligned_cols=95  Identities=22%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             06998527631156678721489899999875002335555311047987886367417816665587899999740156
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLIF  249 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l~~  249 (371)
                      -++.++|.||||..      ..++.+...+...+...        .++.-++.-...++....+.....    .--.+.-
T Consensus       263 ~i~vaVDtSGS~~d------~ei~a~~~Ei~~Il~~~--------~~eltli~~D~~v~~~~~~r~g~~----~~~~~~g  324 (396)
T COG3864         263 KIVVAVDTSGSMTD------AEIDAAMTEIFDILKNK--------NYELTLIECDNIVRRMYRVRKGRD----MKKKLDG  324 (396)
T ss_pred             HEEEEEECCCCCCH------HHHHHHHHHHHHHHHCC--------CCEEEEEEECCHHHHHHCCCCCCC----CCCCCCC
T ss_conf             14789815787448------99999999999987078--------807999980301210310577445----7865578


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             8874564237889999874211012346777666169999840458888
Q gi|254780833|r  250 GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSP  298 (371)
Q Consensus       250 ~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~  298 (371)
                      +|+|...+.+..--..+                +.-++|.+|||.-..+
T Consensus       325 gG~Tdf~Pvfeylek~~----------------~~~~lIyfTDG~gd~p  357 (396)
T COG3864         325 GGGTDFSPVFEYLEKNR----------------MECFLIYFTDGMGDQP  357 (396)
T ss_pred             CCCCCCCHHHHHHHHHC----------------CCCEEEEECCCCCCCC
T ss_conf             98766417999997616----------------3335999816888764


No 78 
>LOAD_ku consensus
Probab=90.69  E-value=1.1  Score=22.58  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=34.0

Q ss_pred             EEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf             699852763115667872-14898999998750023355553110479878863674
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPG-MDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK  226 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  226 (371)
                      ++|++|.|.||....++. ...+..+.+.+..++...-..   .....+|++-|+..
T Consensus         2 ivflID~s~sM~~~~~~~~~s~l~~al~~v~~~~~~ki~~---~~~D~vGvvl~gT~   55 (521)
T LOAD_ku           2 ILFCIDVSPAMFESSDGEELSPFEQALKCIRTLMQRKVIS---RPKDLIGVVLYGTD   55 (521)
T ss_pred             EEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEC---CCCCEEEEEEECCC
T ss_conf             8999979988878789988886999999999999864458---99986999998279


No 79 
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=84.44  E-value=2.6  Score=20.25  Aligned_cols=143  Identities=10%  Similarity=0.061  Sum_probs=88.5

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEECCC-CEEECCCCCCHHHHHHHHHCC
Q ss_conf             069985276311566787214898999998750023-355553110479878863674-178166655878999997401
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDI-IKSIPDVNNVVRSGLVTFSSK-IVQTFPLAWGVQHIQEKINRL  247 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~-~~~~~~lt~~~~~~~~~i~~l  247 (371)
                      -.++++|+|.-|..... ..+|...-++++-..++. ++.    +....+|+.+.... +.....+|..+..+..++..+
T Consensus         5 atvvliDNse~s~NgDy-~ptRFeAQkd~ve~if~~K~nd----npEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~   79 (243)
T COG5148           5 ATVVLIDNSEASQNGDY-LPTRFEAQKDAVESIFSKKFND----NPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDI   79 (243)
T ss_pred             EEEEEEECHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHCCC
T ss_conf             28999847066524897-7078888788999999877238----963315445635688512113065412888772365


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             56887456423788999987421101234677766-61699998404588888897899999999997898799999418
Q gi|254780833|r  248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDD-YKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~  326 (371)
                      ...|+-.+..++.-+...|...         ..+. .++++.|+  |.+-..  +..+...++..+|..|+.|-.|-||.
T Consensus        80 ~~~g~a~~~~~lqiaql~lkhR---------~nk~q~qriVaFv--gSpi~e--sedeLirlak~lkknnVAidii~fGE  146 (243)
T COG5148          80 RLHGGADIMRCLQIAQLILKHR---------DNKGQRQRIVAFV--GSPIQE--SEDELIRLAKQLKKNNVAIDIIFFGE  146 (243)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC---------CCCCCCEEEEEEE--CCCCCC--CHHHHHHHHHHHHHCCEEEEEEEHHH
T ss_conf             1247640888999999998601---------4876505899994--684532--67999999999986683589986034


Q ss_pred             CCCH
Q ss_conf             6427
Q gi|254780833|r  327 EAAD  330 (371)
Q Consensus       327 ~~~~  330 (371)
                      -.+.
T Consensus       147 ~~n~  150 (243)
T COG5148         147 AANM  150 (243)
T ss_pred             HHHH
T ss_conf             5556


No 80 
>KOG2487 consensus
Probab=82.83  E-value=2.8  Score=20.02  Aligned_cols=72  Identities=13%  Similarity=0.203  Sum_probs=43.9

Q ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC--CCCEEEEECCHHHHHHHHHHH
Q ss_conf             6169999840458888889789999999999789879999941864279899833--898089828989999999999
Q gi|254780833|r  283 YKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA--SPDRFYSVQNSRKLHDAFLRI  358 (371)
Q Consensus       283 ~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~I  358 (371)
                      .+--|+++|=+.+-....-  ......=.|.+.+|.|-++-.+.+  ..+||+|+  ++|-|-++++++.|-+.+-..
T Consensus       165 lkSRilV~t~t~d~~~qyi--~~MNciFaAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gLLqyLlt~  238 (314)
T KOG2487         165 LKSRILVFTLTRDRALQYI--PYMNCIFAAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGLLQYLLTL  238 (314)
T ss_pred             HHCEEEEEEECHHHHHHHH--HHHHHHHHHHHCCCEEEEEEECCC--CHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
T ss_conf             1232899991517776553--577877778753961589995698--4399998750287047148852599999998


No 81 
>TIGR00627 tfb4 transcription factor tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0016251 general RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0000439 core TFIIH complex.
Probab=82.09  E-value=2.7  Score=20.13  Aligned_cols=76  Identities=13%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             CCCCEEEEEEECCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC--CCCEEEEECCHHHHHHHHH
Q ss_conf             66616999984045888888--9789999999999789879999941864279899833--8980898289899999999
Q gi|254780833|r  281 DDYKKYIIFLTDGENSSPNI--DNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA--SPDRFYSVQNSRKLHDAFL  356 (371)
Q Consensus       281 ~~~~k~ivl~TDG~~~~~~~--~~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af~  356 (371)
                      ...+--+++++=|.-..+..  ..-......=.|.+++|-|=++-++.+....+|||-|  |+|-|-+|+++..|-+.+-
T Consensus       153 ~~l~sR~lv~~~GsGst~d~~~qY~~~MN~iFsA~K~~i~idvv~~~~~~~~~~LqQAaD~TGG~YL~v~~~~~LL~yL~  232 (295)
T TIGR00627       153 EKLKSRILVISIGSGSTEDVALQYIPLMNCIFSAQKQNIPIDVVKIGGDFESGFLQQAADITGGVYLKVEKPKGLLQYLM  232 (295)
T ss_pred             HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHH
T ss_conf             11001178997357876210100200556999851698415899808983020677777663874574278746899999


No 82 
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=77.51  E-value=4.5  Score=18.78  Aligned_cols=160  Identities=21%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE------------------
Q ss_conf             74069985276311566787214898999998750023355553110479878863674178------------------
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ------------------  229 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~------------------  229 (371)
                      |.-.+|++|.|..--..     .-++.+++++...++.....    ...++|+++|......                  
T Consensus         3 pp~~~FvIDvs~~ai~~-----g~l~~~~~si~~~l~~lp~~----~~~~VgiiTfd~~v~~y~l~~~~~~~~~~vv~d~   73 (239)
T cd01468           3 PPVFVFVIDVSYEAIKE-----GLLQALKESLLASLDLLPGD----PRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDL   73 (239)
T ss_pred             CCEEEEEEECCHHHHHC-----HHHHHHHHHHHHHHHHCCCC----CCCEEEEEEECCEEEEEECCCCCCCCCEEEECCC
T ss_conf             98899999886665334-----09999999999999857789----9978999997877899975888778823675388


Q ss_pred             -----------ECCCCCCHHHHHHHHHCCCCC----CCC----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf             -----------166655878999997401568----874----5642378899998742110123467776661699998
Q gi|254780833|r  230 -----------TFPLAWGVQHIQEKINRLIFG----STT----KSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFL  290 (371)
Q Consensus       230 -----------~~~lt~~~~~~~~~i~~l~~~----g~T----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~  290 (371)
                                 ..|+......+.+.++.+...    .+.    ....|++.+...|...       ..++     .|+++
T Consensus        74 ~d~f~P~~~~~lv~~~e~~~~i~~lL~~l~~~~~~~~~~~~~~~~GsAl~~A~~~L~~~-------~~GG-----kI~~f  141 (239)
T cd01468          74 KDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGT-------FAGG-----RIIVF  141 (239)
T ss_pred             CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC-------CCCC-----EEEEE
T ss_conf             55667887545761899899999999987751145478888743799999999997245-------7896-----69999


Q ss_pred             ECCCCCCCCCC----------------------HHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCEEEEE
Q ss_conf             40458888889----------------------78999999999978987999994186-4279899833--89808982
Q gi|254780833|r  291 TDGENSSPNID----------------------NKESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--SPDRFYSV  345 (371)
Q Consensus       291 TDG~~~~~~~~----------------------~~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~  345 (371)
                      +-|.+|.|...                      ..--..++..+...||-|.-..+..+ .+-..|+.++  |+|..|.-
T Consensus       142 ~s~~pt~GpG~l~~r~~~~~~~s~~e~~~~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~TGG~~~~y  221 (239)
T cd01468         142 QGGLPTVGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLY  221 (239)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             57899788986546554557897115665352078999999999986915999972586678388875887269679985


Q ss_pred             CCH
Q ss_conf             898
Q gi|254780833|r  346 QNS  348 (371)
Q Consensus       346 ~~~  348 (371)
                      ++.
T Consensus       222 ~~F  224 (239)
T cd01468         222 DSF  224 (239)
T ss_pred             CCC
T ss_conf             888


No 83 
>KOG4465 consensus
Probab=74.68  E-value=5.4  Score=18.32  Aligned_cols=118  Identities=18%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHHH
Q ss_conf             46740699852763115667872148989999987500233555531104798788636741781666558--7899999
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQEK  243 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~~  243 (371)
                      +.+-..++.+|+|+||.+..-+.+-....+..+ -.+++..+..       ..-.+.|++... .+|+|.+  ..++..+
T Consensus       425 ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~-m~linlhnea-------d~~~vaf~d~lt-e~pftkd~kigqv~~~  495 (598)
T KOG4465         425 PTGKRFCLALDVSASMNQRVLGSILNAREAAAA-MCLINLHNEA-------DSRCVAFCDELT-ECPFTKDMKIGQVLDA  495 (598)
T ss_pred             CCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHH-HHEEEECCCC-------CEEEEEECCCCC-CCCCCCCCCHHHHHHH
T ss_conf             877458999851044445564365556788755-5124512444-------403788605454-6887553449999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             74015688745642378899998742110123467776661699998404588888897899999
Q gi|254780833|r  244 INRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFY  308 (371)
Q Consensus       244 i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~  308 (371)
                      .+.+. .|+|...-.|.|+-..               .-+-.+.|++||-+--.+...+..++..
T Consensus       496 ~nni~-~g~tdcglpm~wa~en---------------nlk~dvfii~tdndt~ageihp~~aik~  544 (598)
T KOG4465         496 MNNID-AGGTDCGLPMIWAQEN---------------NLKADVFIIFTDNDTFAGEIHPAEAIKE  544 (598)
T ss_pred             HHCCC-CCCCCCCCCEEEHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             85588-8887668720432105---------------8875479998358632466677899999


No 84 
>KOG2653 consensus
Probab=72.63  E-value=6  Score=18.02  Aligned_cols=10  Identities=0%  Similarity=-0.340  Sum_probs=3.6

Q ss_pred             EEEEECCCCC
Q ss_conf             6998527631
Q gi|254780833|r  171 MMMVLDVSLS  180 (371)
Q Consensus       171 i~~viD~SgS  180 (371)
                      ++-++..-|+
T Consensus       173 Cc~wvG~~Ga  182 (487)
T KOG2653         173 CCDWVGEGGA  182 (487)
T ss_pred             CEEEECCCCC
T ss_conf             8354468887


No 85 
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.24  E-value=7.2  Score=17.56  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=25.9

Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             75203687189999999999999999999-----9---9999999999999999999999865203
Q gi|254780833|r    8 NFFYNCKGSISILTAILLPVIFIVMGLVI-----E---TSHKFFVKAKLHYILDHSLLYTATKILN   65 (371)
Q Consensus         8 ~f~~d~~G~vai~~al~l~~li~~~g~aV-----D---~~r~~~~ks~Lq~a~DaA~LAaa~~~~~   65 (371)
                      |-.|.+||-.+|+. |++.+++.+.|++.     |   ++.-+..|+.+++++++|.-.+-..+.+
T Consensus         7 r~~r~qRG~~Livv-L~~LvvltLl~l~~~r~~llqeRiSaN~~D~~lAfqaAEaaLr~~E~~i~n   71 (196)
T COG4726           7 RGSRRQRGFALIVV-LMVLVVLTLLGLAAARSVLLQERISANERDRSLAFQAAEAALREGELQINN   71 (196)
T ss_pred             CCCCCCCCEEEHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             87645676473899-999999999999999999989887520677899999999999877899860


No 86 
>pfam04811 Sec23_trunk Sec23/Sec24 trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.
Probab=58.33  E-value=12  Score=16.33  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=84.6

Q ss_pred             CCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE----------------
Q ss_conf             7406998527631-15667872148989999987500233555531104798788636741781----------------
Q gi|254780833|r  168 GLDMMMVLDVSLS-MNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT----------------  230 (371)
Q Consensus       168 ~idi~~viD~SgS-m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----------------  230 (371)
                      |.-.+|++|.|-. ...      .-++.+++++...++.....    ...++|+++|.......                
T Consensus         3 PP~f~FvIDvS~~ai~~------g~l~~~~~si~~~l~~lp~~----~~~~VgiITf~~~v~~y~l~~~~~~~~~~vv~d   72 (241)
T pfam04811         3 PPVFLFVIDVSYNAIKS------GLLAALKESLLQSLDLLPGD----PRALVGFITFDSTVHFFNLSSSLRQPKMLVVSD   72 (241)
T ss_pred             CCEEEEEEECCHHHHHC------CHHHHHHHHHHHHHHHCCCC----CCCEEEEEEECCEEEEEECCCCCCCCEEEEHHH
T ss_conf             98899999886565334------39999999999999847799----986899999688689998778888872650356


Q ss_pred             -----CC--------CCCCHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf             -----66--------655878999997401568------87456423788999987421101234677766616999984
Q gi|254780833|r  231 -----FP--------LAWGVQHIQEKINRLIFG------STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLT  291 (371)
Q Consensus       231 -----~~--------lt~~~~~~~~~i~~l~~~------g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~T  291 (371)
                           .|        +......+.+.++.+...      .......|++.+...|...       ..++     .|++++
T Consensus        73 l~d~f~P~~~~~lv~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~Al~~A~~lL~~~-------~~GG-----kI~~F~  140 (241)
T pfam04811        73 LQDMFLPLPDRFLVPLSECRFVLEDLLEELPRMFPVTKRPERCLGPALQAAVLLLKAA-------FTGG-----KIMLFQ  140 (241)
T ss_pred             HHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC-------CCCC-----EEEEEE
T ss_conf             5430367755546446999999999999757643467887422489999999998516-------8997-----699994


Q ss_pred             CCCCCCCCC--------------C----------HHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCEEEE
Q ss_conf             045888888--------------9----------78999999999978987999994186-4279899833--8980898
Q gi|254780833|r  292 DGENSSPNI--------------D----------NKESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--SPDRFYS  344 (371)
Q Consensus       292 DG~~~~~~~--------------~----------~~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~  344 (371)
                      -|.+|.|..              +          ..--..++..+-..||.+--..+..+ .+-..|+.++  |+|..|.
T Consensus       141 s~~pt~Gpg~~~~~~~~~~~~~~~~e~~~~~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~TGG~i~~  220 (241)
T pfam04811       141 GGLPTVGPGGKLKSRLDESHHDTDKEKAKLVKKADKFYKSLAKECVAQGHSVDLFAFSLDYVDVAELGCLSRLTGGQVYL  220 (241)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             78998797544555444344676300454166217999999999998694599995278667828877687606936998


Q ss_pred             ECCH
Q ss_conf             2898
Q gi|254780833|r  345 VQNS  348 (371)
Q Consensus       345 ~~~~  348 (371)
                      -++.
T Consensus       221 y~~F  224 (241)
T pfam04811       221 YPSF  224 (241)
T ss_pred             ECCC
T ss_conf             6788


No 87 
>pfam02060 ISK_Channel Slow voltage-gated potassium channel.
Probab=57.64  E-value=12  Score=16.25  Aligned_cols=40  Identities=20%  Similarity=0.054  Sum_probs=31.7

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8875203687189999999999999999999999999999
Q gi|254780833|r    6 IRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVK   45 (371)
Q Consensus         6 l~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~k   45 (371)
                      -||..+..+|...++..|+++.++++..++|-++.....|
T Consensus        31 arr~p~~~dg~le~lYiLmvlGfFgFft~GImlsyiRSkk   70 (129)
T pfam02060        31 ARRSPLGDDGKLEALYILMVLGFFGFFTLGIMLSYIRSKK   70 (129)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5678899986026889999999999999999999999886


No 88 
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=57.16  E-value=12  Score=16.21  Aligned_cols=45  Identities=18%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             HHHHCCCEEEEEEECCCCCHHHHHHHC--CCCEEEEECCHHHHHHHHHH
Q ss_conf             999789879999941864279899833--89808982898999999999
Q gi|254780833|r  311 EAKRRGAIVYAIGVQAEAADQFLKNCA--SPDRFYSVQNSRKLHDAFLR  357 (371)
Q Consensus       311 ~~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~  357 (371)
                      .|...||.|-++.++.+  ..+|++|+  ++|-|-.++++..|-..+-.
T Consensus       178 ~Aqk~~ipI~v~~i~g~--s~fl~Q~~daTgG~Yl~ve~~eGllqyL~~  224 (296)
T COG5242         178 AAQKFGIPISVFSIFGN--SKFLLQCCDATGGDYLTVEDTEGLLQYLLS  224 (296)
T ss_pred             EHHHCCCCEEEEEECCC--CHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf             26434981489982486--178998763448726862482069999999


No 89 
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=50.29  E-value=16  Score=15.53  Aligned_cols=39  Identities=13%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             699998404588888897899999999997898799999418642
Q gi|254780833|r  285 KYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAA  329 (371)
Q Consensus       285 k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~~  329 (371)
                      .-+|++      +|...+.++.-+++...+++..+=+||+---.|
T Consensus       170 dgLVII------GGDdSNTnAA~LAEyF~~~~~~t~viGVPKTID  208 (566)
T TIGR02477       170 DGLVII------GGDDSNTNAALLAEYFAKKGLKTQVIGVPKTID  208 (566)
T ss_pred             CEEEEE------CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             648997------479867999999999997389922786402547


No 90 
>COG1681 FlaB Archaeal flagellins [Cell motility and secretion]
Probab=50.04  E-value=15  Score=15.60  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=16.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3687189999999999999999
Q gi|254780833|r   12 NCKGSISILTAILLPVIFIVMG   33 (371)
Q Consensus        12 d~~G~vai~~al~l~~li~~~g   33 (371)
                      +|||.+-|=.++.|+.|+++++
T Consensus         1 ~rrG~~GIgtlIVfIAmVlVAA   22 (209)
T COG1681           1 DRRGATGIGTLIVFIAMVLVAA   22 (209)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9841104328999999999999


No 91 
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=48.62  E-value=11  Score=16.35  Aligned_cols=60  Identities=18%  Similarity=0.269  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEEC-CCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             9789999999999789879999941-8642798998338980898289899999999999964
Q gi|254780833|r  301 DNKESLFYCNEAKRRGAIVYAIGVQ-AEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEM  362 (371)
Q Consensus       301 ~~~~~~~~c~~~k~~gi~i~tIg~~-~~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i  362 (371)
                      ++..+..+++.+.++||-+..|.+- .+.++..||-|-+..|=  -++-+.+.++++++++++
T Consensus       334 ~~~~a~~~~~~L~~~Gi~v~~ir~PtVp~g~~rlRi~lta~ht--~~did~lv~~l~~v~~~l  394 (395)
T PRK06939        334 DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHT--KEQLDRAIDAFEKVGKEL  394 (395)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999779748207899889898569988787799--999999999999999963


No 92 
>pfam04964 Flp_Fap Flp/Fap pilin component.
Probab=44.89  E-value=19  Score=15.02  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=16.2

Q ss_pred             HHCCCCCCHHHHHHHHHHHHH
Q ss_conf             520368718999999999999
Q gi|254780833|r    9 FFYNCKGSISILTAILLPVIF   29 (371)
Q Consensus         9 f~~d~~G~vai~~al~l~~li   29 (371)
                      |+|||+|.-+|=-+|+...+-
T Consensus         1 F~kde~GaTAIEYgLIaalIa   21 (47)
T pfam04964         1 FLKDESGATAIEYGLIAALIA   21 (47)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
T ss_conf             965656415999999999999


No 93 
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24 
Probab=44.82  E-value=19  Score=15.01  Aligned_cols=174  Identities=15%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE------------------
Q ss_conf             74069985276311566787214898999998750023355553110479878863674178------------------
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ------------------  229 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~------------------  229 (371)
                      |.-.+|++|.|..--..     .-+..+.+++...++.....   ....++|+++|.....-                  
T Consensus         3 Pp~y~FvIDvS~~av~s-----G~l~~~~~sI~~~L~~lp~~---~~rt~VgiiTfds~vhfy~l~~~l~~pqm~vv~Dl   74 (244)
T cd01479           3 PAVYVFLIDVSYNAIKS-----GLLATACEALLSNLDNLPGD---DPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDL   74 (244)
T ss_pred             CCEEEEEEECCHHHHHH-----CHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEECCCCCCCCEEEEEECC
T ss_conf             98899999898999876-----87999999999999857788---88628999996887999966888888716873066


Q ss_pred             ---ECCC--------CCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             ---1666--------5587899999740156------8874564237889999874211012346777666169999840
Q gi|254780833|r  230 ---TFPL--------AWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTD  292 (371)
Q Consensus       230 ---~~~l--------t~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TD  292 (371)
                         ..|+        ...+..+...++.+..      ........|++.+...|...         ++    |+ +++.-
T Consensus        75 ~d~f~P~~~~llv~l~e~~~~i~~lL~~lp~~f~~~~~~~~~~G~Al~aA~~~l~~~---------GG----kI-~~f~s  140 (244)
T cd01479          75 DDPFLPLPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKET---------GG----KI-IVFQS  140 (244)
T ss_pred             CCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---------CC----EE-EEEEC
T ss_conf             555678874436525998999999999878875068988643889999999999734---------98----89-99964


Q ss_pred             CCCCCCCC----------------------CHHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHC--CCCE--EEE-
Q ss_conf             45888888----------------------9789999999999789879999941864-279899833--8980--898-
Q gi|254780833|r  293 GENSSPNI----------------------DNKESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCA--SPDR--FYS-  344 (371)
Q Consensus       293 G~~~~~~~----------------------~~~~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~--~y~-  344 (371)
                      +-++.|..                      .+.--..++...-..+|.|...-+.... +-..|..++  |+|.  ||. 
T Consensus       141 s~Pt~G~G~l~~r~~~~~~~~~~e~~ll~p~~~fY~~la~~~~~~~isvDlF~~~~~~~Dlatl~~l~~~TGG~~~~Yp~  220 (244)
T cd01479         141 SLPTLGAGKLKSREDPKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYPS  220 (244)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECC
T ss_conf             79988887550054434568602222038660899999999998592189996268766544430044316724898078


Q ss_pred             --ECCHHHHHHHHHHHHHHHH
Q ss_conf             --2898999999999999640
Q gi|254780833|r  345 --VQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       345 --~~~~~~L~~af~~I~~~i~  363 (371)
                        .....+-.+..+++.+-++
T Consensus       221 f~~~~~~d~~kl~~dl~~~lt  241 (244)
T cd01479         221 FNFSAPNDVEKLVNELARYLT  241 (244)
T ss_pred             CCCCCHHHHHHHHHHHHHHHC
T ss_conf             777677688999999999834


No 94 
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea.  Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=43.86  E-value=20  Score=14.92  Aligned_cols=19  Identities=37%  Similarity=0.562  Sum_probs=11.4

Q ss_pred             HHHHHHHHCCCEEEEEEECCC
Q ss_conf             999999978987999994186
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      ...+.++++|  +|+||+..|
T Consensus       191 gv~~aa~e~g--~~~IG~d~d  209 (258)
T cd06353         191 GVIQAAEEKG--VYAIGYVSD  209 (258)
T ss_pred             HHHHHHHHCC--CEEEECCCC
T ss_conf             8999999729--879954676


No 95 
>COG1991 Uncharacterized conserved protein [Function unknown]
Probab=43.67  E-value=9.5  Score=16.84  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=27.2

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8875203687189999999999999999999999
Q gi|254780833|r    6 IRNFFYNCKGSISILTAILLPVIFIVMGLVIETS   39 (371)
Q Consensus         6 l~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~   39 (371)
                      +..|..+.||++..=|.|+++.++++++.++-|-
T Consensus         5 i~~~~~~nkgQiSLEf~Ll~l~ivla~~i~~~y~   38 (131)
T COG1991           5 ITKIILSNKGQISLEFSLLLLAIVLAASIAGAYV   38 (131)
T ss_pred             EEEEEECCCCCEEEEHHHHHHHHHHHHHHEEEEE
T ss_conf             6254224666256413899999999731211489


No 96 
>pfam03850 Tfb4 Transcription factor Tfb4.
Probab=43.28  E-value=20  Score=14.87  Aligned_cols=75  Identities=15%  Similarity=0.144  Sum_probs=47.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC--CCCEEEEECCHHHHHHHHHHHH
Q ss_conf             66169999840458888889789999999999789879999941864279899833--8980898289899999999999
Q gi|254780833|r  282 DYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA--SPDRFYSVQNSRKLHDAFLRIG  359 (371)
Q Consensus       282 ~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~I~  359 (371)
                      ..+.-|++++-..+..  ...-......-.|++.+|.|-+..++.. +..+||+.+  ++|.|+.+++.+.|-+..-..+
T Consensus       140 ~~~~RILiis~S~d~~--~QYi~~MN~iFaAqk~~I~IDvc~L~~~-~s~fLQQA~diT~G~Yl~~~~~~gLlQyL~~~f  216 (271)
T pfam03850       140 SLKSRILVLSGSPDSA--SQYIPIMNSIFAAQKLKIPIDVCKLGGE-DSSFLQQAADITGGVYLHVTEPDGLLQYLMTAF  216 (271)
T ss_pred             CCEEEEEEEECCCCCH--HHHHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHHHHCCEEECCCCCCHHHHHHHHHH
T ss_conf             5302599998788844--7789999999999855974799993699-858999999974977751478333899999996


No 97 
>pfam05814 DUF843 Baculovirus protein of unknown function (DUF843). This family consists of several Baculovirus proteins of around 85 residues long with no known function.
Probab=42.53  E-value=21  Score=14.80  Aligned_cols=43  Identities=30%  Similarity=0.244  Sum_probs=23.7

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q ss_conf             203687189999999999999999999999--------------99999999999999
Q gi|254780833|r   10 FYNCKGSISILTAILLPVIFIVMGLVIETS--------------HKFFVKAKLHYILD   53 (371)
Q Consensus        10 ~~d~~G~vai~~al~l~~li~~~g~aVD~~--------------r~~~~ks~Lq~a~D   53 (371)
                      -|.++++-.+++.|++.++++++ +.+-|.              .-...|.+|.+|.|
T Consensus        18 dk~e~~s~li~~~lllfvlF~~~-l~vyyinteS~~~dL~t~kaKsiKKK~~le~AfD   74 (83)
T pfam05814        18 DKNEGSSELILTLLVLFVLFFCL-LNVYYINTESTPADLYTEKAKKIKKKQDLEDAFD   74 (83)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             04566278999999999999998-7764038977654401412788898988999999


No 98 
>PRK08265 short chain dehydrogenase; Provisional
Probab=41.71  E-value=21  Score=14.72  Aligned_cols=21  Identities=10%  Similarity=-0.051  Sum_probs=15.2

Q ss_pred             HHHHHHHHHCCCEEEEEEECC
Q ss_conf             999999997898799999418
Q gi|254780833|r  306 LFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       306 ~~~c~~~k~~gi~i~tIg~~~  326 (371)
                      ..++...-.+||+|.+|..|.
T Consensus       162 k~lA~e~a~~gIrVN~IaPG~  182 (261)
T PRK08265        162 RSMAMDLAPDGIRVNSVSPGW  182 (261)
T ss_pred             HHHHHHHHHHCEEEEEEEECC
T ss_conf             999999741092998885587


No 99 
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=37.18  E-value=25  Score=14.29  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=31.1

Q ss_pred             CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-HHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             661699998404588888897899999999997898799999418642-7989983389808982898999999999999
Q gi|254780833|r  282 DYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAA-DQFLKNCASPDRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       282 ~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~~-~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~  360 (371)
                      +.+++-++..-|+.|.-    .....+-..++..|++++..+.....+ +..++.+.+............+..+++.+-+
T Consensus       158 nak~Igv~Y~p~E~ns~----~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~  233 (322)
T COG2984         158 NAKSIGVLYNPGEANSV----SLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQ  233 (322)
T ss_pred             CCEEEEEEECCCCCCCH----HHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             87069999579886608----99999999998779889998347632008999973478767998660677888999999


Q ss_pred             HHHHE
Q ss_conf             64000
Q gi|254780833|r  361 EMVKQ  365 (371)
Q Consensus       361 ~i~~~  365 (371)
                      ...+.
T Consensus       234 ~a~~~  238 (322)
T COG2984         234 VANKA  238 (322)
T ss_pred             HHHHH
T ss_conf             98870


No 100
>PRK08643 acetoin reductase; Validated
Probab=35.92  E-value=26  Score=14.17  Aligned_cols=21  Identities=14%  Similarity=0.033  Sum_probs=15.3

Q ss_pred             HHHHHHHHHCCCEEEEEEECC
Q ss_conf             999999997898799999418
Q gi|254780833|r  306 LFYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       306 ~~~c~~~k~~gi~i~tIg~~~  326 (371)
                      ..++..+-..||+|.+|..|.
T Consensus       164 kslA~ela~~gIrVN~V~PG~  184 (256)
T PRK08643        164 QTAARDLASEGITVNAYAPGI  184 (256)
T ss_pred             HHHHHHHHHHCCEEEEEEECC
T ss_conf             999999877591899996066


No 101
>pfam04917 Shufflon_N Bacterial shufflon protein, N-terminal constant region. This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.
Probab=34.12  E-value=28  Score=13.99  Aligned_cols=46  Identities=15%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2036871899999999999999999999999999999999999999
Q gi|254780833|r   10 FYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHS   55 (371)
Q Consensus        10 ~~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~ks~Lq~a~DaA   55 (371)
                      +|..||-.++=..+.|.++++++.+...+..-++...+.|.+...+
T Consensus         2 r~~~kGf~LlE~~~~L~I~~~~~~~~~~~~~~~~~~~~~q~aA~q~   47 (356)
T pfam04917         2 KKTDKGVSLLEVGAVLLIVVMVIPKVAENIEDYLNNVRWQNAAEHA   47 (356)
T ss_pred             CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1203443089999999999999999999999899999999999999


No 102
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.27  E-value=29  Score=13.91  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             HHHHHHHCCCEEEEEEECCCC----------CHHHHHHHCC--C-CEEEEECCHHHHHHHHHHHHH----HHHHEEEEE
Q ss_conf             999999789879999941864----------2798998338--9-808982898999999999999----640007874
Q gi|254780833|r  308 YCNEAKRRGAIVYAIGVQAEA----------ADQFLKNCAS--P-DRFYSVQNSRKLHDAFLRIGK----EMVKQRILY  369 (371)
Q Consensus       308 ~c~~~k~~gi~i~tIg~~~~~----------~~~~l~~cAs--~-~~~y~~~~~~~L~~af~~I~~----~i~~~~i~~  369 (371)
                      +.......||+|.+|..|.-.          +++..+....  | ++   .-+++|+.++..-+..    -|+-+.|.+
T Consensus       170 lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R---~~~p~eiA~~v~fL~S~~s~~itG~~i~v  245 (253)
T PRK12826        170 LALELARRNITVNSVHPGMVDTPMAGNVFLGDASVAEAAAAAIPLGR---LGEPEDIAAAVLFLASDAARYITGQTLPV  245 (253)
T ss_pred             HHHHHHHHCEEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             99985320959999962879672121446687899999983799999---85999999999999686322956873887


No 103
>pfam02608 Bmp Basic membrane protein. This is a family of basic membrane lipoproteins form Borrelia and various putative lipoproteins form other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family. One protein, Bacillus subtilis med, is a transcriptional activator.
Probab=32.73  E-value=30  Score=13.85  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=11.7

Q ss_pred             HHHHHHHHCCCEEEEEEECCC
Q ss_conf             999999978987999994186
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      ...+.+|+.|+..|+||+..|
T Consensus       198 Gv~~aa~e~g~~~~~IGvd~d  218 (302)
T pfam02608       198 GVIQAAKELGLYGYVIGVDQD  218 (302)
T ss_pred             HHHHHHHHCCCCCEEEEEECC
T ss_conf             999999971998269999676


No 104
>TIGR00565 trpE_proteo anthranilate synthase component I; InterPro: IPR005257   This family represents anthranilate/para-aminobenzoate synthase component I from proteobacteria and actinobacteria.    This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. This group includes proteobacteria such as Escherichia coli and Helicobacter pylori but also the Gram-positive organism Corynebacterium glutamicum. The second group (IPR005256 from INTERPRO) includes eukaryotes, archaea, and most other bacterial lineages; sequences from the second group may resemble pabB more closely than other trpE from this group. ; GO: 0004049 anthranilate synthase activity, 0009058 biosynthetic process.
Probab=32.52  E-value=21  Score=14.79  Aligned_cols=40  Identities=20%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             666169999840458888889789999999999789879999
Q gi|254780833|r  281 DDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       281 ~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      .+|-+||++|-|-+..-=...++.++..  ++..+.++||-|
T Consensus       277 ~NPSPYMFy~~D~DFiLFGASPESaLKY--~a~~r~~EIYPI  316 (505)
T TIGR00565       277 SNPSPYMFYMKDEDFILFGASPESALKY--DALSRQLEIYPI  316 (505)
T ss_pred             CCCCCCEEEEECCCEEEECCCCCHHHHC--CCCCCCEEEECC
T ss_conf             4859603232047535546870012310--312582777035


No 105
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=32.39  E-value=30  Score=13.82  Aligned_cols=19  Identities=47%  Similarity=0.660  Sum_probs=10.0

Q ss_pred             HHHHHHHHCCCEEEEEEECCC
Q ss_conf             999999978987999994186
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      ..++.++++|  +|+||+..|
T Consensus       193 gv~~aa~e~g--~~~IG~d~d  211 (260)
T cd06304         193 GVIQAAKEAG--VYAIGVDSD  211 (260)
T ss_pred             HHHHHHHHHC--CEEEEECCC
T ss_conf             7999998609--789984576


No 106
>pfam09001 DUF1890 Domain of unknown function (DUF1890). This domain is found in a set of hypothetical archaeal proteins.
Probab=32.20  E-value=30  Score=13.80  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=12.1

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHC
Q ss_conf             89879999941864279899833
Q gi|254780833|r  315 RGAIVYAIGVQAEAADQFLKNCA  337 (371)
Q Consensus       315 ~gi~i~tIg~~~~~~~~~l~~cA  337 (371)
                      .+.+.|.|=||.+  .+.|.+|.
T Consensus        93 ~~~~~~aiVFg~~--~e~la~~i  113 (138)
T pfam09001        93 SNAKTYAIVFGEH--AEELAETI  113 (138)
T ss_pred             CCCCEEEEEECCC--HHHHHHHH
T ss_conf             4786589993588--79999986


No 107
>pfam11411 DNA_ligase_IV DNA ligase IV. DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface.
Probab=30.76  E-value=32  Score=13.65  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=18.6

Q ss_pred             CCEEEEECCHHHHHHHHHHHHH
Q ss_conf             9808982898999999999999
Q gi|254780833|r  339 PDRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       339 ~~~~y~~~~~~~L~~af~~I~~  360 (371)
                      |+.||--++.++|.++|..|.+
T Consensus        14 GDSy~~dt~~~qLk~vF~~i~~   35 (36)
T pfam11411        14 GDSYFVDTDEQQLKDVFHRIKK   35 (36)
T ss_pred             CCCEEECCCHHHHHHHHHHHCC
T ss_conf             5400104858999999987504


No 108
>KOG4169 consensus
Probab=30.71  E-value=32  Score=13.65  Aligned_cols=10  Identities=30%  Similarity=0.484  Sum_probs=4.7

Q ss_pred             HHCCCEEEEE
Q ss_conf             9789879999
Q gi|254780833|r  313 KRRGAIVYAI  322 (371)
Q Consensus       313 k~~gi~i~tI  322 (371)
                      .+.||++++|
T Consensus       171 ~~sGV~~~av  180 (261)
T KOG4169         171 QRSGVRFNAV  180 (261)
T ss_pred             HHCCEEEEEE
T ss_conf             6558799997


No 109
>pfam00331 Glyco_hydro_10 Glycosyl hydrolase family 10.
Probab=30.34  E-value=32  Score=13.61  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC-----CC----HHHHHHHCCCC
Q ss_conf             999984045888888978999999999978987999994186-----42----79899833898
Q gi|254780833|r  286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE-----AA----DQFLKNCASPD  340 (371)
Q Consensus       286 ~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~-----~~----~~~l~~cAs~~  340 (371)
                      ...++-|-.-............+++.++++|+.|-.||+..-     .+    ...|+.+++-|
T Consensus       163 akL~~NDyn~e~~~~k~~~~~~lv~~l~~~gvpIDgIG~Q~H~~~~~~~~~~i~~~l~~~a~lG  226 (308)
T pfam00331       163 AKLYYNDYNIEGPNAKREAIYNLVKDLKAKGVPIDGIGMQSHLSAGGPSISEIEAALKRFASLG  226 (308)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             7788742665466478999999999999779986448876660689999999999999999659


No 110
>PRK05715 NADH dehydrogenase subunit K; Validated
Probab=29.88  E-value=33  Score=13.56  Aligned_cols=39  Identities=15%  Similarity=0.254  Sum_probs=20.0

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             257887520368718999999999999999999999999
Q gi|254780833|r    3 FLNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHK   41 (371)
Q Consensus         3 ~~~l~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~r~   41 (371)
                      |....+++.+-.|++..+|.+.+-..=..+|+++=...+
T Consensus        45 fv~fs~~~~~~~Gqv~~lfii~vAAaE~avgLAi~v~~~   83 (99)
T PRK05715         45 FVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLY   83 (99)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999918987145899999999999999999999999


No 111
>TIGR02180 GRX_euk Glutaredoxin; InterPro: IPR011899   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.   This entry is found in eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=29.32  E-value=34  Score=13.50  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=17.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHEEEEEEC
Q ss_conf             89899999999999964000787419
Q gi|254780833|r  346 QNSRKLHDAFLRIGKEMVKQRILYNK  371 (371)
Q Consensus       346 ~~~~~L~~af~~I~~~i~~~~i~~~~  371 (371)
                      ++.++|+++|.+|+.+=+=.||.+.+
T Consensus        38 ~~g~~~Q~~L~~~TG~~TVP~iFi~g   63 (85)
T TIGR02180        38 SNGSEIQDYLKEITGQRTVPNIFING   63 (85)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCEEECC
T ss_conf             88578999999844892388265688


No 112
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=28.15  E-value=35  Score=13.38  Aligned_cols=59  Identities=15%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             HHHHHHHHH---CCCEEEEEEECCCC------CHHHHHHHCC--CCEEEE--ECCHHHHHHHHHHHHHHHHH
Q ss_conf             999999997---89879999941864------2798998338--980898--28989999999999996400
Q gi|254780833|r  306 LFYCNEAKR---RGAIVYAIGVQAEA------ADQFLKNCAS--PDRFYS--VQNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       306 ~~~c~~~k~---~gi~i~tIg~~~~~------~~~~l~~cAs--~~~~y~--~~~~~~L~~af~~I~~~i~~  364 (371)
                      ..+.+.+++   .++.++.||--.|-      ..+..++.|.  +-.||+  +.+...+.+.|..|+++|-+
T Consensus        91 ~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e~~~~a~~~~~~y~e~Sak~g~gI~~~F~~i~~~il~  162 (162)
T pfam00071        91 KKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK  162 (162)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             999999998579886288997524746518899999999999809979997378882999999999999676


No 113
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=27.86  E-value=36  Score=13.35  Aligned_cols=13  Identities=69%  Similarity=1.066  Sum_probs=5.6

Q ss_pred             HHHCCCEEEEEEECC
Q ss_conf             997898799999418
Q gi|254780833|r  312 AKRRGAIVYAIGVQA  326 (371)
Q Consensus       312 ~k~~gi~i~tIg~~~  326 (371)
                      ++++|  +|+||+..
T Consensus       202 a~e~g--~~~IG~d~  214 (265)
T cd06354         202 AKEAG--VYAIGVDS  214 (265)
T ss_pred             HHHCC--CEEEEEEC
T ss_conf             99709--87999977


No 114
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.86  E-value=36  Score=13.35  Aligned_cols=54  Identities=22%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC-----C----HHHHHHHCCCC
Q ss_conf             999840458888889789999999999789879999941864-----2----79899833898
Q gi|254780833|r  287 IIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEA-----A----DQFLKNCASPD  340 (371)
Q Consensus       287 ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~-----~----~~~l~~cAs~~  340 (371)
                      ..++-|-.--...........+++.++++|+.|..||+..--     +    ...|+.+++-|
T Consensus       120 kL~~NDy~~~~~~~k~~~~~~lv~~l~~~g~pIdgIG~Q~H~~~~~~~~~~~~~~l~~~~~~g  182 (254)
T smart00633      120 KLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLG  182 (254)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             898742555477477999999999999779983158762430479999999999999999659


No 115
>PRK05872 short chain dehydrogenase; Provisional
Probab=27.57  E-value=36  Score=13.32  Aligned_cols=19  Identities=21%  Similarity=0.067  Sum_probs=13.0

Q ss_pred             HHHHHHHHCCCEEEEEEEC
Q ss_conf             9999999789879999941
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~  325 (371)
                      .+..++...||+|-+|..|
T Consensus       167 sLa~Ela~~GIrVn~V~PG  185 (296)
T PRK05872        167 ALRLEVAHRGVSVGSAYLS  185 (296)
T ss_pred             HHHHHHHHHCCEEEEEECC
T ss_conf             9999840019389999708


No 116
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=27.23  E-value=37  Score=13.28  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=38.1

Q ss_pred             CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-----EECCCC----C-HHHHHHHCC-CCEEEEE--CCH
Q ss_conf             66169999840458888889789999999999789879999-----941864----2-798998338-9808982--898
Q gi|254780833|r  282 DYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI-----GVQAEA----A-DQFLKNCAS-PDRFYSV--QNS  348 (371)
Q Consensus       282 ~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI-----g~~~~~----~-~~~l~~cAs-~~~~y~~--~~~  348 (371)
                      ...++++++.||+-+.+...  ++...+-..|-.++.+ .|     ......    . +++-+.+.+ +=++..+  .|.
T Consensus       126 ~~~~v~~~iGDGel~EG~~w--EAl~~A~~~~L~nLi~-ivD~N~~~~~g~~~~~~~~~~l~~~~~sfG~~v~~vdGhd~  202 (255)
T cd02012         126 FDYRVYVLLGDGELQEGSVW--EAASFAGHYKLDNLIA-IVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV  202 (255)
T ss_pred             CCCCEEEEECCCCCCCCHHH--HHHHHHHHCCCCCEEE-EECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             88717999425110331289--9999985558775699-98689826256030254768899999966981110179999


Q ss_pred             HHHHHHHHHHHHHHHHEEE
Q ss_conf             9999999999996400078
Q gi|254780833|r  349 RKLHDAFLRIGKEMVKQRI  367 (371)
Q Consensus       349 ~~L~~af~~I~~~i~~~~i  367 (371)
                      .+|.++|+...+.-.+.++
T Consensus       203 ~~i~~a~~~a~~~~~kP~~  221 (255)
T cd02012         203 EEILAALEEAKKSKGKPTL  221 (255)
T ss_pred             HHHHHHHHHHHHCCCCCEE
T ss_conf             9999999999867999589


No 117
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=27.21  E-value=37  Score=13.28  Aligned_cols=51  Identities=8%  Similarity=-0.031  Sum_probs=25.9

Q ss_pred             HHHHHHHHCCCEEEEEEECCCC-----------CHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             9999999789879999941864-----------27989983389808982898999999999999
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAEA-----------ADQFLKNCASPDRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~~-----------~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~  360 (371)
                      .++..+...||++.+|.-|.-.           +.+.+...-.....   -.++|+.++.--++.
T Consensus       160 ~La~El~~~gIrVn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---l~PedVA~av~fl~s  221 (248)
T PRK10538        160 NLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVA---LTPEDVSEAVWWVAT  221 (248)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCCHHCCCCCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHHC
T ss_conf             99998478685999998475768411114556768889740357899---999999999999982


No 118
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family; InterPro: IPR014047 Members of this family probably act as chromate transporters , , and are found in both bacteria and archaebacteria. The protein reduces chromate accumulation and is essential for chromate resistance. They are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP..
Probab=27.02  E-value=37  Score=13.26  Aligned_cols=49  Identities=16%  Similarity=0.138  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_conf             03687189999999999999999999999999999999999---99999999
Q gi|254780833|r   11 YNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYI---LDHSLLYT   59 (371)
Q Consensus        11 ~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~ks~Lq~a---~DaA~LAa   59 (371)
                      +...|.++.-.|++||.++.+.++++=|.|....-..+|+.   +..++.+.
T Consensus        62 ~g~~Ga~~ag~AF~LPs~l~~~~L~~~y~~~~~l~~~~g~~f~G~~~~vi~l  113 (390)
T TIGR00937        62 GGILGAILAGVAFVLPSFLLVVALAWLYVQYGSLPKAVGAVFYGLKAAVIAL  113 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7799999999999869999999999999974364368999998899999999


No 119
>PRK01215 competence damage-inducible protein A; Provisional
Probab=26.72  E-value=38  Score=13.22  Aligned_cols=20  Identities=0%  Similarity=0.076  Sum_probs=9.7

Q ss_pred             ECCHHHHHHHHHHHHHHHHH
Q ss_conf             28989999999999996400
Q gi|254780833|r  345 VQNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       345 ~~~~~~L~~af~~I~~~i~~  364 (371)
                      +.+..+..+..+.+.++|.+
T Consensus       232 a~~~~ea~~~i~~~~~~ire  251 (264)
T PRK01215        232 AESEEEAEEKVEKALERLRE  251 (264)
T ss_pred             CCCHHHHHHHHHHHHHHHHH
T ss_conf             09999999999999999999


No 120
>PRK08541 flagellin; Validated
Probab=25.23  E-value=40  Score=13.06  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=15.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3687189999999999999999
Q gi|254780833|r   12 NCKGSISILTAILLPVIFIVMG   33 (371)
Q Consensus        12 d~~G~vai~~al~l~~li~~~g   33 (371)
                      +|||.+-|=.++.++.|+++++
T Consensus         1 ~kkG~~GigtlIVfIAmVlVAA   22 (212)
T PRK08541          1 MKKGAVGIGTLIVFIAMVLVAA   22 (212)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9753024208999999999999


No 121
>PRK06138 short chain dehydrogenase; Provisional
Probab=25.07  E-value=40  Score=13.04  Aligned_cols=20  Identities=15%  Similarity=0.089  Sum_probs=14.2

Q ss_pred             HHHHHHHHCCCEEEEEEECC
Q ss_conf             99999997898799999418
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .++...-..||++.+|..|.
T Consensus       166 ~lA~e~a~~gIrVNaI~PG~  185 (252)
T PRK06138        166 AMALDHATDGIRVNAVAPGT  185 (252)
T ss_pred             HHHHHHHHCCEEEEEEEECC
T ss_conf             99998622291999997588


No 122
>TIGR02848 spore_III_AC stage III sporulation protein AC; InterPro: IPR009570   This family consists of several bacterial stage III sporulation protein AC (SpoIIIAC) sequences. The exact function of this family is unknown..
Probab=24.72  E-value=41  Score=13.00  Aligned_cols=29  Identities=7%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88752036871899999999999999999
Q gi|254780833|r    6 IRNFFYNCKGSISILTAILLPVIFIVMGL   34 (371)
Q Consensus         6 l~~f~~d~~G~vai~~al~l~~li~~~g~   34 (371)
                      |++..|||-++++.+.++..+.+.++-.+
T Consensus        23 Lk~~GKeE~A~~vtL~G~~~vL~mVi~l~   51 (64)
T TIGR02848        23 LKQAGKEEQAQMVTLAGIVVVLFMVITLI   51 (64)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88708667876778887789999999999


No 123
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=24.64  E-value=41  Score=12.99  Aligned_cols=30  Identities=20%  Similarity=0.006  Sum_probs=14.8

Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             999984045888888978999999999978987999
Q gi|254780833|r  286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       286 ~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .+++.+|..--      .....+...+.+.+|.+|+
T Consensus       187 al~~~~d~~v~------s~~~~i~~~a~~~~iPv~~  216 (281)
T cd06325         187 AIYVPTDNTVA------SAMEAVVKVANEAKIPVIA  216 (281)
T ss_pred             EEEEECCCHHH------HHHHHHHHHHHHCCCCEEE
T ss_conf             99991881277------7999999999874998893


No 124
>PRK08324 short chain dehydrogenase; Validated
Probab=24.60  E-value=41  Score=12.98  Aligned_cols=77  Identities=18%  Similarity=0.193  Sum_probs=44.5

Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCE----EEEECCHHHHHHHHHHHHHH
Q ss_conf             99998404588888897899999999997898799999418642798998338980----89828989999999999996
Q gi|254780833|r  286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDR----FYSVQNSRKLHDAFLRIGKE  361 (371)
Q Consensus       286 ~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cAs~~~----~y~~~~~~~L~~af~~I~~~  361 (371)
                      -++|+|=|-..-       -..+|..+.+.|.+|.......+.-+...+.+..++.    ..++++.+++.++|+++.++
T Consensus       422 KVALVTGga~GI-------G~A~A~~fa~eGA~Vvl~D~~~~~l~~~a~el~~~~~~~~~~~DVtd~~~v~~~v~~~~~~  494 (676)
T PRK08324        422 KVALVTGAAGGI-------GLATAKRLAAEGACVVLADIDEEAAEAAAAELGGRDRALGVACDVTDEAAVQAAFEEAALA  494 (676)
T ss_pred             CEEEEECCCCCH-------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             879994798816-------2999999998799899995888999999999707994799980689999999999999998


Q ss_pred             HHHEEEEE
Q ss_conf             40007874
Q gi|254780833|r  362 MVKQRILY  369 (371)
Q Consensus       362 i~~~~i~~  369 (371)
                      .-..-+.+
T Consensus       495 fGgIDiLV  502 (676)
T PRK08324        495 FGGVDIVV  502 (676)
T ss_pred             HCCCCEEE
T ss_conf             59988899


No 125
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=24.19  E-value=42  Score=12.94  Aligned_cols=20  Identities=15%  Similarity=0.029  Sum_probs=13.8

Q ss_pred             HHHHHHHHCCCEEEEEEECC
Q ss_conf             99999997898799999418
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .++...-..||++.+|..|.
T Consensus       168 ~lA~e~a~~gIrVNaVaPG~  187 (251)
T PRK07523        168 GMATDWAKHGLQCNAIAPGY  187 (251)
T ss_pred             HHHHHHCCCCEEEEEEEECC
T ss_conf             99999702094999997378


No 126
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=23.19  E-value=44  Score=12.82  Aligned_cols=16  Identities=25%  Similarity=0.320  Sum_probs=7.1

Q ss_pred             CCCCCEEEEECCCCCC
Q ss_conf             4674069985276311
Q gi|254780833|r  166 DIGLDMMMVLDVSLSM  181 (371)
Q Consensus       166 ~~~idi~~viD~SgSm  181 (371)
                      ...+|-..++..-+|+
T Consensus       164 ~l~LdgLVIiGGddSn  179 (550)
T cd00765         164 KLDLDALVVIGGDDSN  179 (550)
T ss_pred             HCCCCEEEEECCCCCH
T ss_conf             8599879996898734


No 127
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=22.21  E-value=46  Score=12.70  Aligned_cols=33  Identities=15%  Similarity=0.261  Sum_probs=14.4

Q ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             61699998404588888897899999999997898799
Q gi|254780833|r  283 YKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       283 ~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      .+|-+||++==-|=. +.+-++.+.+|+    .|.-|+
T Consensus       111 ErRkLvL~~REtPL~-SiHLENmL~L~~----~G~IIl  143 (181)
T TIGR00421       111 ERRKLVLVPRETPLN-SIHLENMLRLSR----MGAIIL  143 (181)
T ss_pred             CCCCEEEECCCCCCC-HHHHHHHHHHHH----CCCEEE
T ss_conf             054246403678875-154899999982----792532


No 128
>PRK07576 short chain dehydrogenase; Provisional
Probab=22.15  E-value=46  Score=12.69  Aligned_cols=50  Identities=20%  Similarity=0.200  Sum_probs=26.0

Q ss_pred             HHHHHHHCCCEEEEEEECCCCC----------HHHHHHHCC--C-CEEEEECCHHHHHHHHHHHHH
Q ss_conf             9999997898799999418642----------798998338--9-808982898999999999999
Q gi|254780833|r  308 YCNEAKRRGAIVYAIGVQAEAA----------DQFLKNCAS--P-DRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       308 ~c~~~k~~gi~i~tIg~~~~~~----------~~~l~~cAs--~-~~~y~~~~~~~L~~af~~I~~  360 (371)
                      ++...-.+||+|.+|..|.=.+          +...+.+..  | ++   .-.++|+.++.-=++.
T Consensus       170 lA~e~a~~gIrVN~IaPG~i~~t~~~~~~~~~~~~~~~~~~~~Pl~R---~g~pedia~~v~FL~S  232 (260)
T PRK07576        170 LALEWGPEGVRVNSISPGPIAGTEGMARLAPTPELQAAVAQSVPLKR---NGTGQDIANAALFLAS  232 (260)
T ss_pred             HHHHHHHCCEEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC
T ss_conf             99997133929999834775783666632799999999984799999---8699999999999958


No 129
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=21.34  E-value=48  Score=12.59  Aligned_cols=20  Identities=15%  Similarity=0.026  Sum_probs=14.4

Q ss_pred             HHHHHHHHCCCEEEEEEECC
Q ss_conf             99999997898799999418
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .+...+-..||++.+|..|.
T Consensus       172 ~lA~ela~~gIrVN~V~PG~  191 (255)
T PRK06113        172 NMAFDLGEKNIRVNGIAPGA  191 (255)
T ss_pred             HHHHHHHHCCEEEEEEEECC
T ss_conf             99999826494999986488


No 130
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II.  This GATase1-like domain has an essential role in HP-II catalase activity.  However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII.  Catalase-1 is associated with non-growing cells; C
Probab=21.04  E-value=48  Score=12.55  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC---CCCEEEEECCHHH
Q ss_conf             89999999999789879999941864279899833---8980898289899
Q gi|254780833|r  303 KESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA---SPDRFYSVQNSRK  350 (371)
Q Consensus       303 ~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA---s~~~~y~~~~~~~  350 (371)
                      .........+=+.+-.|-.+    ....++|...-   .....+..++..+
T Consensus        82 ~~~~~fv~eay~h~KpI~a~----~~~~~lL~~agi~~~~~Gvv~~~~~~~  128 (142)
T cd03132          82 GRALHFVTEAFKHGKPIGAV----GEGSDLLEAAGIPLEDPGVVTADDVKD  128 (142)
T ss_pred             HHHHHHHHHHHHCCCEEEEE----CCHHHHHHHCCCCCCCCCEEEECCCCH
T ss_conf             67999999999769979993----772999997697999985798158667


No 131
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.39  E-value=50  Score=12.47  Aligned_cols=19  Identities=26%  Similarity=0.230  Sum_probs=12.9

Q ss_pred             HHHHHHHHCCCEEEEEEEC
Q ss_conf             9999999789879999941
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQ  325 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~  325 (371)
                      .++...-..||+|.+|..|
T Consensus       187 ~lA~e~a~~gIrVNaIaPG  205 (278)
T PRK08277        187 WLAVEFAKVGIRVNAIAPG  205 (278)
T ss_pred             HHHHHHCCCCEEEEEEEEC
T ss_conf             9999965359499998528


No 132
>PRK07505 hypothetical protein; Provisional
Probab=20.35  E-value=50  Score=12.46  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEEC-CCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             9789999999999789879999941-8642798998338980898289899999999999964
Q gi|254780833|r  301 DNKESLFYCNEAKRRGAIVYAIGVQ-AEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEM  362 (371)
Q Consensus       301 ~~~~~~~~c~~~k~~gi~i~tIg~~-~~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i  362 (371)
                      +......+++.+.++|+-+..|.+- .+.++..||-|-+..|=  -++-+.|.++++++.++.
T Consensus       343 ~~~~a~~~~~~L~e~Gi~v~~i~~PtVp~g~~rlRi~l~A~hT--~edId~l~~~L~~v~~e~  403 (405)
T PRK07505        343 DEDTAIKYAKQLKDAGFYTSPVFFPVVAKGNAGLRIMFRADHT--NEEIKRLCSLLKEILADY  403 (405)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCC--HHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999789018756388389798249987488899--999999999999999985


No 133
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=20.20  E-value=51  Score=12.45  Aligned_cols=30  Identities=20%  Similarity=0.048  Sum_probs=15.0

Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             999984045888888978999999999978987999
Q gi|254780833|r  286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       286 ~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .+++.+|..-.      .....+...+.+.++.+|+
T Consensus       186 al~i~~d~~v~------s~~~~i~~~a~~~kiPv~~  215 (292)
T pfam04392       186 AIFIPTDNLIA------SAFTAVLQEANKAKIPVIT  215 (292)
T ss_pred             EEEEECCCCHH------HHHHHHHHHHHHCCCCEEE
T ss_conf             89993781078------8999999999974999895


No 134
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132   This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=20.19  E-value=51  Score=12.44  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=24.6

Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             9998404588888897899999999997898799999
Q gi|254780833|r  287 IIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG  323 (371)
Q Consensus       287 ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg  323 (371)
                      ||||=|+-++... .......+...+|++|-+.-+|+
T Consensus       160 IiL~HDASd~~Kq-T~~ALp~Ii~~LK~~GY~fv~is  195 (198)
T TIGR02764       160 IILLHDASDSAKQ-TVKALPEIIKKLKEKGYEFVTIS  195 (198)
T ss_pred             EEEEEECCCCCCC-HHHHHHHHHHHHHHCCCEEEEHH
T ss_conf             6987634879744-17789999899875495343422


Done!