HHsearch alignment for GI: 254780833 and conserved domain: pfam03731
>pfam03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain. The Ku heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold.
Probab=94.43 E-value=0.32 Score=25.73 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=94.2
Q ss_pred EEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------EEECCCCC-CHH
Q ss_conf 6998527631156678721-48989999987500233555531104798788636741----------78166655-878
Q gi|254780833|r 171 MMMVLDVSLSMNDHFGPGM-DKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------VQTFPLAW-GVQ 238 (371)
Q Consensus 171 i~~viD~SgSm~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------~~~~~lt~-~~~ 238 (371)
T Consensus 2 vvf~ID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~kIis---~~kD~vGvv~~~T~~~~n~~~~~ni~vl~~l~~p~a~ 78 (222)
T pfam03731 2 TVFLIDASPAMFESVKGLEASPFEQALKCIDEILSRKIIS---NDKDLIGVVLYGTDESENSEGFENVTVLRDLDLPGAE 78 (222)
T ss_pred EEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEC---CCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 7999979988868788998783999999999999877137---8998588999705677776788606985057887889
Q ss_pred HHH---HHHHC-------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH---H
Q ss_conf 999---99740-------1568874564237889999874211012346777666169999840458888889789---9
Q gi|254780833|r 239 HIQ---EKINR-------LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKE---S 305 (371)
Q Consensus 239 ~~~---~~i~~-------l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~---~ 305 (371)
T Consensus 79 ~ik~L~~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~-------~~~~k~~~krI~LfTdnD~P~~~~~~~~~~~~ 151 (222)
T pfam03731 79 LLKELDQFLEPLADVFGFNGDSSDGDLLSALWVCMDLLQKQ-------TGKKKLSKKRILLFTNLDDPFEDDDQLDTIRQ 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-------HCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999998510344441168977664888999999998851-------03434578679998999989887517789999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHC---CC--CEEEEECCHHHHHHHHHHHHHHHHHEE
Q ss_conf 999999997898799999418642---79899833---89--808982898999999999999640007
Q gi|254780833|r 306 LFYCNEAKRRGAIVYAIGVQAEAA---DQFLKNCA---SP--DRFYSVQNSRKLHDAFLRIGKEMVKQR 366 (371)
Q Consensus 306 ~~~c~~~k~~gi~i~tIg~~~~~~---~~~l~~cA---s~--~~~y~~~~~~~L~~af~~I~~~i~~~~ 366 (371)
T Consensus 152 ~~~a~Dl~d~gi~i~lf~i~~~~~f~~~~FY~dii~~~~~~~~~~~~~~~~~~l~~l~~~i~~k~~~kR 220 (222)
T pfam03731 152 KLLAEDLRDEGIEFNLIHLPNSGGFDPNIFYKEIIKLGEDEENEVMLDLEGEKLEDLLSRLRAKQTAKR 220 (222)
T ss_pred HHHHCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 998523787497799961498888877788886426776434566777303169999999974303565