HHsearch alignment for GI: 254780833 and conserved domain: pfam03731

>pfam03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain. The Ku heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold.
Probab=94.43  E-value=0.32  Score=25.73  Aligned_cols=186  Identities=15%  Similarity=0.146  Sum_probs=94.2

Q ss_pred             EEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------EEECCCCC-CHH
Q ss_conf             6998527631156678721-48989999987500233555531104798788636741----------78166655-878
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGM-DKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------VQTFPLAW-GVQ  238 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------~~~~~lt~-~~~  238 (371)
T Consensus         2 vvf~ID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~kIis---~~kD~vGvv~~~T~~~~n~~~~~ni~vl~~l~~p~a~   78 (222)
T pfam03731         2 TVFLIDASPAMFESVKGLEASPFEQALKCIDEILSRKIIS---NDKDLIGVVLYGTDESENSEGFENVTVLRDLDLPGAE   78 (222)
T ss_pred             EEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEC---CCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf             7999979988868788998783999999999999877137---8998588999705677776788606985057887889


Q ss_pred             HHH---HHHHC-------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHH---H
Q ss_conf             999---99740-------1568874564237889999874211012346777666169999840458888889789---9
Q gi|254780833|r  239 HIQ---EKINR-------LIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKE---S  305 (371)
Q Consensus       239 ~~~---~~i~~-------l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~---~  305 (371)
T Consensus        79 ~ik~L~~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~-------~~~~k~~~krI~LfTdnD~P~~~~~~~~~~~~  151 (222)
T pfam03731        79 LLKELDQFLEPLADVFGFNGDSSDGDLLSALWVCMDLLQKQ-------TGKKKLSKKRILLFTNLDDPFEDDDQLDTIRQ  151 (222)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-------HCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             99999998510344441168977664888999999998851-------03434578679998999989887517789999


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCC---HHHHHHHC---CC--CEEEEECCHHHHHHHHHHHHHHHHHEE
Q ss_conf             999999997898799999418642---79899833---89--808982898999999999999640007
Q gi|254780833|r  306 LFYCNEAKRRGAIVYAIGVQAEAA---DQFLKNCA---SP--DRFYSVQNSRKLHDAFLRIGKEMVKQR  366 (371)
Q Consensus       306 ~~~c~~~k~~gi~i~tIg~~~~~~---~~~l~~cA---s~--~~~y~~~~~~~L~~af~~I~~~i~~~~  366 (371)
T Consensus       152 ~~~a~Dl~d~gi~i~lf~i~~~~~f~~~~FY~dii~~~~~~~~~~~~~~~~~~l~~l~~~i~~k~~~kR  220 (222)
T pfam03731       152 KLLAEDLRDEGIEFNLIHLPNSGGFDPNIFYKEIIKLGEDEENEVMLDLEGEKLEDLLSRLRAKQTAKR  220 (222)
T ss_pred             HHHHCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             998523787497799961498888877788886426776434566777303169999999974303565