HHsearch alignment for GI: 254780833 and conserved domain: pfam04056
>pfam04056 Ssl1 Ssl1-like. Ssl1-like proteins are 40kDa subunits of the Transcription factor II H complex.
Probab=98.32 E-value=0.00013 Score=46.17 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=109.9
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 06998527631156678721489899999875002335555311047987886367-41781666558789999974015
Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPLAWGVQHIQEKINRLI 248 (371)
Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~lt~~~~~~~~~i~~l~ 248 (371)
T Consensus 54 hl~iilD~S~aM~e~DlkP-~R~~~~l~~l~~Fi~efF---dqNPiSQlgii~~rn~~a~~ls~lsgnp~~hi~aL~~~~ 129 (250)
T pfam04056 54 HLYIVLDCSRAMEEKDLRP-SRFACTIKYLETFVEEFF---DQNPISQIGLITCKDGRAHRLTDLTGNPRVHIKALKSLR 129 (250)
T ss_pred EEEEEEECCHHHHHCCCCC-CHHHHHHHHHHHHHHHHH---HCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 8999998827676351586-489999999999999987---439830227999965713783325799899999999874
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf ---68874564237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r 249 ---FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ 325 (371)
Q Consensus 249 ---~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~ 325 (371)
T Consensus 130 ~~~~~G~pSLqN~Le~a~~~L~~~-------P--~~~sREILii~gSL----~T~DPgdI~~tI~~l~~~~IrvsvI~La 196 (250)
T pfam04056 130 EAECGGDPSLQNALELARASLKHV-------P--SHGSREVLIIFGSL----STCDPGDIYSTIDTLKKEKIRCSVIGLS 196 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCC-------C--CCCCEEEEEEEEEC----CCCCCCCHHHHHHHHHHCCCEEEEEEEC
T ss_conf 069999920899999999887508-------9--87854899998204----4458865999999999759079998733
Q ss_pred CCCCHHHHHHHC--CCCEEEEECCHHHHHHHHHH
Q ss_conf 864279899833--89808982898999999999
Q gi|254780833|r 326 AEAADQFLKNCA--SPDRFYSVQNSRKLHDAFLR 357 (371)
Q Consensus 326 ~~~~~~~l~~cA--s~~~~y~~~~~~~L~~af~~ 357 (371)
T Consensus 197 aE--v~Ick~l~~~T~G~y~V~lde~Hfk~ll~~ 228 (250)
T pfam04056 197 AE--VFICKELCKATNGTYSVALDETHLKELLLE 228 (250)
T ss_pred HH--HHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf 89--999999999749988875699999999995