HHsearch alignment for GI: 254780833 and conserved domain: pfam07002
>pfam07002 Copine Copine. This family represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca(2+)-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth.
Probab=96.14 E-value=0.087 Score=29.15 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCH------------HHHHHHHHCCCCCCCCCCC
Q ss_conf 1489899999875002335555311047987886367417816665587------------8999997401568874564
Q gi|254780833|r 189 MDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGV------------QHIQEKINRLIFGSTTKST 256 (371)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~------------~~~~~~i~~l~~~g~T~~~ 256 (371)
T Consensus 10 ~N~Y~~AI~~vg~il~~YD~Dk~~p~yGFGa~~~~~~~vsh~F~ln~~~~~p~~~G~~gvl~aY~~~~~~v~l~gPT~fa 89 (145)
T pfam07002 10 PNPYEQAIRIVGEILQPYDSDKRFPAFGFGARLPPDYEVSHDFPLNFNPENPECNGIEGVLNAYREALPNLQLSGPTNFA 89 (145)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCHH
T ss_conf 88999999999999872689881365435556699986330123568989997669999999999985810654875279
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r 257 PGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ 325 (371)
Q Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~ 325 (371)
T Consensus 90 piI~~a~~~a~~~~---------~~~~Y~VLlIiTDG~i~----D~~~Ti~aIv~AS~~PlSIIiVGVG 145 (145)
T pfam07002 90 PIIDAAARIAEATQ---------KSGQYHVLLIITDGQVT----DMKATIDAIVRASHLPLSIIIVGVG 145 (145)
T ss_pred HHHHHHHHHHHHHC---------CCCEEEEEEEECCCCCC----CHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 99999999999722---------37718999996389735----6999999999982799279999519