HHsearch results for GI: 254780833 and protein with PDBid: 1yvr_A
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.50 E-value=8.4e-06 Score=52.05 Aligned_cols=137 Identities=19% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHH
Q ss_conf 467406998527631156678-72148989999987500233555531104798788636741781666558--789999
Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFG-PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQE 242 (371)
Q Consensus 166 ~~~idi~~viD~SgSm~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~ 242 (371)
..+..+++.+|.||||..... ......+.+.-....+.. .... ..++.|++... .++++.. ......
T Consensus 366 ~~~~r~liavDvSGSM~~~~~g~~~~~~~~aa~la~~~~~-~~~~--------~~vv~Fs~~~~-~l~~~~~~~l~~~~~ 435 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVAR-TEKD--------SHMVAFSDEML-PCPITVNMLLHEVVE 435 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHH-HCSS--------EEEEEESSSEE-CCSCCTTSCHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCC--------CEEEEECCCEE-ECCCCHHHHHHHHHH
T ss_conf 7786389999764554374448975799999999999998-5799--------87999769358-727771014999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 97401568874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r 243 KINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI 322 (371)
Q Consensus 243 ~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI 322 (371)
.+.. ..+|+|++..++.|+... ....+++|++|||+.+.+...+...........+.+.++++|
T Consensus 436 ~~~~-~~~ggT~~~~~i~~a~~~---------------~~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v 499 (538)
T 1yvr_A 436 KMSD-ITMGSTDCALPMLWAQKT---------------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVC 499 (538)
T ss_dssp HHTT-CCCSCCCTTHHHHHHHHT---------------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHC-CCCCCCCHHHHHHHHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9843-678986189999999961---------------556898999817997789889999999999984899759999
Q ss_pred EECCCC
Q ss_conf 941864
Q gi|254780833|r 323 GVQAEA 328 (371)
Q Consensus 323 g~~~~~ 328 (371)
++....
T Consensus 500 ~l~~~~ 505 (538)
T 1yvr_A 500 AMTSNG 505 (538)
T ss_dssp ECSSSS
T ss_pred ECCCCC
T ss_conf 856898