HHsearch results for GI: 254780833 and protein with PDBid: 1yvr_A

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.50  E-value=8.4e-06  Score=52.05  Aligned_cols=137  Identities=19%  Similarity=0.229  Sum_probs=81.4

Q ss_pred             CCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHH
Q ss_conf             467406998527631156678-72148989999987500233555531104798788636741781666558--789999
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFG-PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQE  242 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~  242 (371)
                      ..+..+++.+|.||||..... ......+.+.-....+.. ....        ..++.|++... .++++..  ......
T Consensus       366 ~~~~r~liavDvSGSM~~~~~g~~~~~~~~aa~la~~~~~-~~~~--------~~vv~Fs~~~~-~l~~~~~~~l~~~~~  435 (538)
T 1yvr_A          366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVAR-TEKD--------SHMVAFSDEML-PCPITVNMLLHEVVE  435 (538)
T ss_dssp             CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHH-HCSS--------EEEEEESSSEE-CCSCCTTSCHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCC--------CEEEEECCCEE-ECCCCHHHHHHHHHH
T ss_conf             7786389999764554374448975799999999999998-5799--------87999769358-727771014999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             97401568874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r  243 KINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       243 ~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      .+.. ..+|+|++..++.|+...               ....+++|++|||+.+.+...+...........+.+.++++|
T Consensus       436 ~~~~-~~~ggT~~~~~i~~a~~~---------------~~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v  499 (538)
T 1yvr_A          436 KMSD-ITMGSTDCALPMLWAQKT---------------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVC  499 (538)
T ss_dssp             HHTT-CCCSCCCTTHHHHHHHHT---------------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEE
T ss_pred             HHHC-CCCCCCCHHHHHHHHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9843-678986189999999961---------------556898999817997789889999999999984899759999


Q ss_pred             EECCCC
Q ss_conf             941864
Q gi|254780833|r  323 GVQAEA  328 (371)
Q Consensus       323 g~~~~~  328 (371)
                      ++....
T Consensus       500 ~l~~~~  505 (538)
T 1yvr_A          500 AMTSNG  505 (538)
T ss_dssp             ECSSSS
T ss_pred             ECCCCC
T ss_conf             856898