HHsearch results for GI: 254780833 and protein with PDBid: 3efo_B
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.30 E-value=0.044 Score=29.63 Aligned_cols=166 Identities=12% Similarity=0.116 Sum_probs=95.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCEE---------------
Q ss_conf 467406998527631156678721489899999875002335555-3110479878863674178---------------
Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIP-DVNNVVRSGLVTFSSKIVQ--------------- 229 (371)
Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~--------------- 229 (371)
..+.-.+|++|.|.+--.. .-++.+.+++...++...... ......++|+++|+.....
T Consensus 175 ~~pp~~vfvIDvS~~av~~-----g~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~ 249 (770)
T 3efo_B 175 PNPPAFIFMIDVSYSNIKN-----GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV 249 (770)
T ss_dssp CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC
T ss_conf 9997899999897577664-----59999999999999856222303677537999981671899557888675403411
Q ss_pred --------------ECCCCCCHHHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf --------------1666558789999974015------68874564237889999874211012346777666169999
Q gi|254780833|r 230 --------------TFPLAWGVQHIQEKINRLI------FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF 289 (371)
Q Consensus 230 --------------~~~lt~~~~~~~~~i~~l~------~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl 289 (371)
..++......+.+.++.+. ....+....++..+...+.... .+ -|+ ++
T Consensus 250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~-------~g----Gki-i~ 317 (770)
T 3efo_B 250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD-------CP----GKL-FI 317 (770)
T ss_dssp CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT-------CC----EEE-EE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-------CC----CEE-EE
T ss_conf 5854346556445212089989999999862312205788887438999999999971569-------99----639-99
Q ss_pred EECCCC-CCCCC----------------------CHHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCEEE
Q ss_conf 840458-88888----------------------978999999999978987999994186-4279899833--898089
Q gi|254780833|r 290 LTDGEN-SSPNI----------------------DNKESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--SPDRFY 343 (371)
Q Consensus 290 ~TDG~~-~~~~~----------------------~~~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y 343 (371)
+++|-+ +.+.. ...--..++..+.+.||.|-.+.+..+ .+-..|..++ |+|+.|
T Consensus 318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~ 397 (770)
T 3efo_B 318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY 397 (770)
T ss_dssp EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf 96579988887444465432235772234303621799999999999859469999944876787999999986496699
Q ss_pred EECCH
Q ss_conf 82898
Q gi|254780833|r 344 SVQNS 348 (371)
Q Consensus 344 ~~~~~ 348 (371)
..++.
T Consensus 398 ~~~~f 402 (770)
T 3efo_B 398 KYNNF 402 (770)
T ss_dssp ECTTC
T ss_pred EECCC
T ss_conf 96898