HHsearch results for GI: 254780833 and protein with PDBid: 3efo_B

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.30  E-value=0.044  Score=29.63  Aligned_cols=166  Identities=12%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCEE---------------
Q ss_conf             467406998527631156678721489899999875002335555-3110479878863674178---------------
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIP-DVNNVVRSGLVTFSSKIVQ---------------  229 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~---------------  229 (371)
                      ..+.-.+|++|.|.+--..     .-++.+.+++...++...... ......++|+++|+.....               
T Consensus       175 ~~pp~~vfvIDvS~~av~~-----g~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~  249 (770)
T 3efo_B          175 PNPPAFIFMIDVSYSNIKN-----GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV  249 (770)
T ss_dssp             CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred             CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC
T ss_conf             9997899999897577664-----59999999999999856222303677537999981671899557888675403411


Q ss_pred             --------------ECCCCCCHHHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             --------------1666558789999974015------68874564237889999874211012346777666169999
Q gi|254780833|r  230 --------------TFPLAWGVQHIQEKINRLI------FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF  289 (371)
Q Consensus       230 --------------~~~lt~~~~~~~~~i~~l~------~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl  289 (371)
                                    ..++......+.+.++.+.      ....+....++..+...+....       .+    -|+ ++
T Consensus       250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~-------~g----Gki-i~  317 (770)
T 3efo_B          250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD-------CP----GKL-FI  317 (770)
T ss_dssp             CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT-------CC----EEE-EE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-------CC----CEE-EE
T ss_conf             5854346556445212089989999999862312205788887438999999999971569-------99----639-99


Q ss_pred             EECCCC-CCCCC----------------------CHHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCEEE
Q ss_conf             840458-88888----------------------978999999999978987999994186-4279899833--898089
Q gi|254780833|r  290 LTDGEN-SSPNI----------------------DNKESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--SPDRFY  343 (371)
Q Consensus       290 ~TDG~~-~~~~~----------------------~~~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y  343 (371)
                      +++|-+ +.+..                      ...--..++..+.+.||.|-.+.+..+ .+-..|..++  |+|+.|
T Consensus       318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~  397 (770)
T 3efo_B          318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY  397 (770)
T ss_dssp             EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf             96579988887444465432235772234303621799999999999859469999944876787999999986496699


Q ss_pred             EECCH
Q ss_conf             82898
Q gi|254780833|r  344 SVQNS  348 (371)
Q Consensus       344 ~~~~~  348 (371)
                      ..++.
T Consensus       398 ~~~~f  402 (770)
T 3efo_B          398 KYNNF  402 (770)
T ss_dssp             ECTTC
T ss_pred             EECCC
T ss_conf             96898