RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780833|ref|YP_003065246.1| hypothetical protein
CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62]
(371 letters)
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human
complement system, glycoprotein, SP, VWFA, hydrolase;
HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A*
2i6s_A*
Length = 509
Score = 80.3 bits (197), Expect = 7e-16
Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 28/221 (12%)
Query: 160 KISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSG 219
KI + L++ ++LD S S+++ + + S M+D I S +V
Sbjct: 1 KIQIQRSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSFEINVSV---A 51
Query: 220 LVTFSSKIVQTFPLAWG----VQHIQEKINRLIF-----GSTTKSTPGLEYAYNKIFDAK 270
++TF+S+ + + + + + G+ T + L Y + +
Sbjct: 52 IITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQM 111
Query: 271 EKLEHIAKGHDDYKKYIIFLTD-----GENSSPNIDNKESLFYCNEAKRRGAIVYAIGV- 324
L + + II LTD G + +D+ + N+ + +YAIGV
Sbjct: 112 RLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVG 171
Query: 325 QAEAADQFLKNCAS----PDRFYSVQNSRKLHDAFLRIGKE 361
+ + + L S + +Q+++ LH F +
Sbjct: 172 KLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLDV 212
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 70.7 bits (172), Expect = 5e-13
Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 34/214 (15%)
Query: 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIV 228
+++ +VLD S S+ G A + + +++ + S GLVT+++
Sbjct: 2 MNIYLVLDGSDSI------GASNFTGAKKVLVNLIEKVASYGVKPRY---GLVTYATYPK 52
Query: 229 QTFPL----AWGVQHIQEKINRLIF-----GSTTKSTPGLEYAYNKIFDAKEKLEHIAKG 279
+ + + +++N + + S T + L+ Y+ + + +G
Sbjct: 53 IWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV---PPEG 109
Query: 280 HDDYKKYIIFLT-----DGENSSPNIDNKESLFYC----NEAKRRGAIVYAIGVQAEAAD 330
+ + II +T G + ID L Y + VY GV
Sbjct: 110 WNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQ 169
Query: 331 QFLKNCASP----DRFYSVQNSRKLHDAFLRIGK 360
+ AS V++ L D F ++
Sbjct: 170 VNINALASKKDNEQHVCKVKDMECLEDVFYQMID 203
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement system, convertase, complement alternate
pathway, complement pathway; HET: NAG P6G; 2.20A {Homo
sapiens} PDB: 3hs0_D* 2ok5_A*
Length = 741
Score = 69.9 bits (170), Expect = 9e-13
Identities = 39/247 (15%), Positives = 76/247 (30%), Gaps = 34/247 (13%)
Query: 141 TFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIR 200
T KI +++ +VLD S S+ ++
Sbjct: 216 TIEGVDAEDGHGPGEQQKRKIVLDPSGSMNIYLVLDGSGSIGAS---DFTGAKKCLVNLI 272
Query: 201 EMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG----VQHIQEKINRLIF-----GS 251
E + R GLVT+++ ++ + +++N + + S
Sbjct: 273 EKVASYG------VKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKS 326
Query: 252 TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGE-----NSSPNIDNKESL 306
T + L+ Y+ + + +G + + II +TDG + ID L
Sbjct: 327 GTNTKKALQAVYSMMSWPDDVP---PEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDL 383
Query: 307 FYC----NEAKRRGAIVYAIGVQAEAADQFLKNCA----SPDRFYSVQNSRKLHDAFLRI 358
Y + VY GV + A + + V++ L D F ++
Sbjct: 384 LYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQM 443
Query: 359 GKEMVKQ 365
E
Sbjct: 444 IDESQSL 450
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Length = 223
Score = 65.3 bits (158), Expect = 2e-11
Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 34/225 (15%)
Query: 160 KISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSG 219
KI +++ +VLD S S+ A +S+ +++ + S G
Sbjct: 7 KIVLDPSGSMNIYLVLDGSDSIGA------SNFTGAKKSLVNLIEKVASYGVKPRY---G 57
Query: 220 LVTFSSKIVQTFPLAWGVQHIQEKINRLI---------FGSTTKSTPGLEYAYNKIFDAK 270
LVT+++ ++ + + + + S T + L+ Y+ +
Sbjct: 58 LVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD 117
Query: 271 EKLEHIAKGHDDYKKYIIFLTDGENSSPN---------IDNKESLFYCNEAKRRGAIVYA 321
+ +G + + II +TDG ++ D + VY
Sbjct: 118 DVP---PEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 174
Query: 322 IGVQAEAADQFLKNCAS----PDRFYSVQNSRKLHDAFLRIGKEM 362
GV + AS + V++ L D F ++ E
Sbjct: 175 FGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 219
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 64.6 bits (156), Expect = 3e-11
Identities = 20/194 (10%), Positives = 61/194 (31%), Gaps = 18/194 (9%)
Query: 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI 227
LD++ +LD S +++ + V + +M++ ++ V +V +
Sbjct: 13 LLDLVFLLDGSSRLSE------AEFEVLKAFVVDMMERLRVSQKWVRV---AVVEYHDGS 63
Query: 228 VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYI 287
L + + + ++ + + +
Sbjct: 64 HAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVL---KYTLFQIFSKIDRPEASRIAL 120
Query: 288 IFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCAS---PDRFYS 344
+ + E P ++ + Y K++ IV +G+ A + ++ ++ +
Sbjct: 121 LLMASQE---PQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFV 177
Query: 345 VQNSRKLHDAFLRI 358
+ + +L I
Sbjct: 178 LSSVDELEQQRDEI 191
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 61.8 bits (149), Expect = 2e-10
Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 34/207 (16%)
Query: 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPD--VNNVVRSGLVTFSS 225
D++ ++D S S++ R+ M++ ++++ + L+ FS+
Sbjct: 9 EQDIVFLIDGSGSISS-------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSN 55
Query: 226 KIVQTFPL---AWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDD 282
K F + + T + ++ +++F A D
Sbjct: 56 KFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHAS------YGARRD 109
Query: 283 YKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV----QAEAADQFLKNCAS 338
K +I +TDG+ ++D K+ + A G I YAIGV Q + + L + AS
Sbjct: 110 AAKILIVITDGKKEGDSLDYKDVI---PMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 166
Query: 339 P---DRFYSVQNSRKLHDAFLRIGKEM 362
+ + V++ L D ++ +++
Sbjct: 167 KPSQEHIFKVEDFDALKDIQNQLKEKI 193
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1
1bho_1 1idn_1
Length = 194
Score = 59.9 bits (144), Expect = 9e-10
Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 30/205 (14%)
Query: 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTF--SS 225
D+ ++D S S+ + +++ +K + L+ +
Sbjct: 5 DSDIAFLIDGSGSIIP------HDFRRMKEFVSTVMEQLK-----KSKTLFSLMQYSEEF 53
Query: 226 KIVQTFPLAWGVQHIQEKINRLIF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK 284
+I TF + + + + T + G+ ++F+ +
Sbjct: 54 RIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNIT------NGARKNAF 107
Query: 285 KYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV----QAEAADQFLKNCASP- 339
K ++ +TDGE + ++ + EA R G I Y IGV ++E + Q L AS
Sbjct: 108 KILVVITDGEKFGDPLGYEDVI---PEADREGVIRYVIGVGDAFRSEKSRQELNTIASKP 164
Query: 340 --DRFYSVQNSRKLHDAFLRIGKEM 362
D + V N L ++ +++
Sbjct: 165 PRDHVFQVNNFEALKTIQNQLREKI 189
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 58.5 bits (141), Expect = 2e-09
Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 21/158 (13%)
Query: 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ 229
++ +D S S +L A ++ +L + D L+TF Q
Sbjct: 7 VLIFAVDASGSAAV------ARLSEAKGAVELLLGRAYAARD-----HVSLITFRGTAAQ 55
Query: 230 TFPLAWG-VQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYII 288
+ + ++ L G T G+E A A+ I
Sbjct: 56 VLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTAKQAR---------SRGMTPTIA 106
Query: 289 FLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326
LTDG + +A + + A G+ A
Sbjct: 107 LLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPA 144
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 57.5 bits (138), Expect = 5e-09
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 26/169 (15%)
Query: 162 SSKSDIGLDMMMVLDVSLSMN-DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGL 220
S+ LD+ ++D S S+ +F + + + +P V + +
Sbjct: 11 SAMGTNQLDICFLIDSSGSIGIQNF----------RLVKQFLHTFLMVLPIGPEEVNNAV 60
Query: 221 VTFSSKIVQTFPLAWGVQHIQEKINRLIFG-----STTKSTPGLEYAYNKIFDAKEKLEH 275
VT+S+ + + L ++ + +T ++ GL+ +F
Sbjct: 61 VTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKACKQILFT------G 114
Query: 276 IAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV 324
G + K +I +TDGE+ S + + E + G IV + V
Sbjct: 115 SRPGREHVPKLVIGMTDGESDSDFRTVRAA----KEIRELGGIVTVLAV 159
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo
sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A
1mhp_A
Length = 213
Score = 56.7 bits (136), Expect = 8e-09
Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 37/210 (17%)
Query: 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIV 228
LD+++VLD S S+ + D++K + + G+V + +
Sbjct: 8 LDIVIVLDGSNSIYPW-----------DSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT 56
Query: 229 QTFPL--AWGVQHIQEKINRLIF--GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK 284
F L + + +++ G T + G + A + F K
Sbjct: 57 HEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARG------ARRGVK 110
Query: 285 KYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV---------QAEAADQFLKN 335
K ++ +TDGE+ DN + + ++I + E + +K+
Sbjct: 111 KVMVIVTDGESH----DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKS 166
Query: 336 CASP---DRFYSVQNSRKLHDAFLRIGKEM 362
AS F++V + L +G+ +
Sbjct: 167 IASEPTEKHFFNVSDELALVTIVKTLGERI 196
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 55.3 bits (132), Expect = 2e-08
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 25/199 (12%)
Query: 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI 227
D+ VLD S S+ +++ + + + V+ +R + FSS+
Sbjct: 6 AFDLYFVLDKSGSVANNW----------IEIYNFVQQLAERF--VSPEMRLSFIVFSSQA 53
Query: 228 VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYI 287
PL I + + L S T + + + G I
Sbjct: 54 TIILPLTGDRGKISKGLEDLKRVSPVGETY-IHEGLKLANE-----QIQKAGGLKTSSII 107
Query: 288 IFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCAS-PDRFYSVQ 346
I LTDG+ E ++ GA VY +GV + L+ A ++ + V+
Sbjct: 108 IALTDGKLDGLVPSYAEKE--AKISRSLGASVYCVGVL-DFEQAQLERIADSKEQVFPVK 164
Query: 347 NSRKLHDAFLRIGKEMVKQ 365
A I ++ Q
Sbjct: 165 GG---FQALKGIINSILAQ 180
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell
adhesion, cleavage on PAIR of basic residues, disease
mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Length = 184
Score = 51.0 bits (121), Expect = 4e-07
Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 32/195 (16%)
Query: 169 LDMMMVLDVSLSMN-DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI 227
LD+ VL+ S + F RS M ++I+ + + + ++ +S +
Sbjct: 3 LDVAFVLEGSDKIGEADF----------NRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMV 52
Query: 228 VQTFPLAWGVQHIQEKI----NRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283
+P + R G+ T + L Y + F +
Sbjct: 53 TVEYPFSEAQSKGDILQRVREIRYQGGNRTNTGLALRYLSDHSFLVS------QGDREQA 106
Query: 284 KKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFY 343
+ +T S V IGV A Q L+ P+
Sbjct: 107 PNLVYMVTGNPASDEIK-----------RLPGDIQVVPIGVGPNANVQELERIGWPNAPI 155
Query: 344 SVQNSRKLHDAFLRI 358
+Q+ L +
Sbjct: 156 LIQDFETLPREAPDL 170
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- sheet, RNA binding
protein; 1.89A {Deinococcus radiodurans}
Length = 535
Score = 49.2 bits (117), Expect = 2e-06
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 25/162 (15%)
Query: 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK 226
++ LDVS SM G+ L + L +++ PD + F+ +
Sbjct: 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDA------LTMGFAEQ 414
Query: 227 IVQTFPLAWG--VQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK 284
+ ++ +K + FG T +
Sbjct: 415 FRPL-GITPRDTLESAMQKAQSVSFGGT-----DCAQPILWAAQERLD-----------V 457
Query: 285 KYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326
+ TD E + + +L + R + +G+ A
Sbjct: 458 DTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTA 499
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia
coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I
1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A*
1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A*
2o7n_A* 3f78_A* ...
Length = 179
Score = 48.8 bits (115), Expect = 2e-06
Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 25/197 (12%)
Query: 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI 227
+D++ + D S+S+ D+ +++++ + V+ + S K
Sbjct: 2 NVDLVFLFDGSMSL------QPDEFQKILDFMKDVMKKCSNTSYQFAAVQ---FSTSYKT 52
Query: 228 VQTFPLAWGVQHIQEKINRLIFG-STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKY 286
F + + + T + + Y ++F + D K
Sbjct: 53 EFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREE------LGARPDATKV 106
Query: 287 IIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASP---DRFY 343
+I +TDGE + + + R I Q + + + L AS +
Sbjct: 107 LIIITDGEATDSGNIDAA------KDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVK 160
Query: 344 SVQNSRKLHDAFLRIGK 360
+ KL D + K
Sbjct: 161 ILDTFEKLKDLCTELQK 177
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell
adhesion, glycoprotein, toxin/cell adhesion complex;
HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB:
1aox_A 1dzi_A
Length = 200
Score = 47.9 bits (113), Expect = 4e-06
Identities = 25/207 (12%), Positives = 66/207 (31%), Gaps = 33/207 (15%)
Query: 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTF--SSK 226
+D+++V D S S+ + ++ + + GL+ + + +
Sbjct: 7 IDVVVVCDESNSIYPW-----------DAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR 55
Query: 227 IVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKY 286
+V + + ++ + Y + + + G K
Sbjct: 56 VVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAA----SGGRRSATKV 111
Query: 287 IIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV---------QAEAADQFLKNCA 337
++ +TDGE+ D ++ + + I V + + +K A
Sbjct: 112 MVVVTDGESH----DGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIA 167
Query: 338 SP---DRFYSVQNSRKLHDAFLRIGKE 361
S F++V + L + +G++
Sbjct: 168 SIPTERYFFNVSDEAALLEKAGTLGEQ 194
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex,
immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Length = 223
Score = 46.9 bits (110), Expect = 8e-06
Identities = 33/225 (14%), Positives = 73/225 (32%), Gaps = 33/225 (14%)
Query: 152 PLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPD 211
+ +S + LD+++VLD S S+ I + D++K +
Sbjct: 6 TFQVVNSFAPVQECSTQLDIVIVLDGSNSIYPW-----------ESVIAFLNDLLKRMDI 54
Query: 212 VNNVVRSGLVTFS--SKIVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDA 269
+ G+V + + + N+++ ++ L +
Sbjct: 55 GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARK--- 111
Query: 270 KEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV----- 324
E KK ++ +TDGE+ DN + + ++I +
Sbjct: 112 -EAFTEARGARRGVKKVMVIVTDGESH----DNYRLKQVIQDCEDENIQRFSIAILGHYN 166
Query: 325 ----QAEAADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEM 362
E + +K+ AS F++V + L +G+ +
Sbjct: 167 RGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERI 211
>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule,
calcium, cell adhesion, disulfide bond, glycoprotein,
magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens}
PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 44.4 bits (104), Expect = 4e-05
Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 38/223 (17%)
Query: 145 CANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLD 204
C L V D++ ++D S S++ R+ M++
Sbjct: 107 CFLLGPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISS-------------RNFATMMN 153
Query: 205 IIKSIPD--VNNVVRSGLVTFSSKIVQTFPL-----AWGVQHIQEKINRLIFGSTTKSTP 257
++++ + L+ FS+K F + + +++L T +
Sbjct: 154 FVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQL--QGFTYTAT 211
Query: 258 GLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGA 317
++ +++F A D K +I +TDG+ ++D K+ + A G
Sbjct: 212 AIQNVVHRLFHAS------YGARRDAAKILIVITDGKKEGDSLDYKDVI---PMADAAGI 262
Query: 318 IVYAIGV----QAEAADQFLKNCAS---PDRFYSVQNSRKLHD 353
I YAIGV Q + + L + AS + + V++ L D
Sbjct: 263 IRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKD 305
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 43.8 bits (102), Expect = 6e-05
Identities = 22/202 (10%), Positives = 53/202 (26%), Gaps = 26/202 (12%)
Query: 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIV 228
LD++++LD S S + + P + + ++ + S
Sbjct: 6 LDVILLLDGSSSF------PASYFDEMKSFAKAFISKANIGPR---LTQVSVLQYGSITT 56
Query: 229 QTFPLAW--GVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKY 286
P H+ ++ + + ++ K
Sbjct: 57 IDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMH-----GARPGASKA 111
Query: 287 IIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASP---DRFY 343
++ L + + A+ V+ IG+ L+ A P
Sbjct: 112 VVILVTDVSVDSVDA------AADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSNVV 165
Query: 344 SVQNSRKLHDAFLRIGKEMVKQ 365
+Q L + +G + +
Sbjct: 166 KLQRIEDL-PTMVTLGNSFLHK 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.9 bits (98), Expect = 2e-04
Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 76/198 (38%)
Query: 100 GFAQDINNIERSTSLSIIIDDQ----HKDYNLSAVSRYEMPFIFCTFPWCANSSHAPLLI 155
G + + + L DQ + L +R+ +P + F H+ LL+
Sbjct: 388 GLNLTLRKAKAPSGL-----DQSRIPFSERKLKFSNRF-LP-VASPF-------HSHLLV 433
Query: 156 TSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVA---TRS---IREM-LDIIKS 208
+S I D+ + +VS + D + + T +R + I +
Sbjct: 434 PASDLI--NKDLVKN-----NVSFNAKD--------IQIPVYDTFDGSDLRVLSGSISER 478
Query: 209 IPD------VN--NVVR--------------SGLVTFSSKIVQ-TFPLAWGVQHIQEKIN 245
I D V + SGL + + T GV
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT-----GV-------- 525
Query: 246 RLIFGSTTKSTPGLEYAY 263
R+I T P +Y +
Sbjct: 526 RVIVAGTLDINPDDDYGF 543
Score = 34.9 bits (80), Expect = 0.026
Identities = 48/348 (13%), Positives = 89/348 (25%), Gaps = 146/348 (41%)
Query: 107 NIERSTSLSIIID-----DQHKDYNLSAVSRYEMPFIFCTFPWCANSSHAPLLITSSVKI 161
++E L + Q ++ F P A T+ ++
Sbjct: 15 SLE--HVLLVPTASFFIASQLQE-----------QFN-KILPEPTEGFAADDEPTTPAEL 60
Query: 162 SSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSI-REML---DI-----------I 206
K +G +V G L + L DI
Sbjct: 61 VGKF-LGYVSSLVEP------SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 207 KSIPDVNNVVRSGLVTFSSKIVQTFP------LAWGVQHIQEKINRL--IFG--STTKST 256
++ ++++ +T + F L + + E +L IFG T
Sbjct: 114 TTLVKTKELIKN-YITARIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGGQGNTD-- 167
Query: 257 PGLEYAYNKIFD-------------------AKEKLEHIAKGHDDYKKY------II-FL 290
+Y F+ + E L + + D +K I+ +L
Sbjct: 168 ---DY-----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 291 TDGENSSPNIDNKESLFY----------------------CN-------EAKRR--GA-- 317
+ ++P+ D Y E + GA
Sbjct: 220 ENPS-NTPDKD------YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 318 ----IVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361
+V A+ + A D S + F+ + RK IG
Sbjct: 273 HSQGLVTAVAI-A-ETD-------SWESFF--VSVRKAITVLFFIGVR 309
Score = 28.4 bits (63), Expect = 2.9
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 69 GNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHKDYNLS 128
G GK+ + ++S I + I D +L+ ++IN E STS + + L
Sbjct: 1678 GEKGKRIRENYSAMIFETI--VD--GKLKTEKIFKEIN--EHSTSYTF-----RSEKGLL 1726
Query: 129 AVSRYEMP 136
+ +++ P
Sbjct: 1727 SATQFTQP 1734
Score = 28.0 bits (62), Expect = 3.3
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 49/167 (29%)
Query: 162 SSKSDIGLDMM----MVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVR 217
S + +G+D+ DV ++HF D G + +LDI+ + P VN +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHF---KDTYGFS------ILDIVINNP-VNLTIH 1675
Query: 218 SGLVTFSSKIVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIA 277
G K G + I+E + +IF + I D K K E I
Sbjct: 1676 FG----GEK---------G-KRIRENYSAMIFET--------------IVDGKLKTEKIF 1707
Query: 278 KGHDDYKKYIIF------LTDGENSSPNIDNKESLFYCNEAKRRGAI 318
K +++ F L+ + + P + E + + K +G I
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF-EDLKSKGLI 1753
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein,
nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Length = 192
Score = 39.7 bits (91), Expect = 0.001
Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 19/169 (11%)
Query: 172 MMVLDVSLSM-NDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT 230
M+++D S M N + P + ++ I + N GL+T Q
Sbjct: 6 MILIDNSEWMINGDYIP--TRFEAQKDTVH---MIFNQKINDNPENMCGLMTIGDNSPQV 60
Query: 231 F-PLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF 289
L ++ L K G++ A L+H +
Sbjct: 61 LSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQ-------LALKHRENKIQRQRIVAFV 113
Query: 290 LTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCAS 338
+ N+ K+ + I + + L++
Sbjct: 114 GSPIVEDEKNLI-----RLAKRMKKNNVAIDIIHIGELQNESALQHFID 157
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus}
Length = 212
Score = 38.2 bits (88), Expect = 0.003
Identities = 16/149 (10%), Positives = 49/149 (32%), Gaps = 16/149 (10%)
Query: 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS 225
D +D+ ++ +S S H + D++K++ +++ R G + +
Sbjct: 1 DNSVDLYFLMGLSGSAQGHL----------SNVQTLGSDLLKALNEISRSGRIGFGSIVN 50
Query: 226 KIV-QTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK 284
L Q ++ + + + + + L I G +
Sbjct: 51 MTFQHILKLTADSSQFQRELRKQ---LVSGKLATPKGQLDAVVQVAICLGEI--GWRNGT 105
Query: 285 KYIIFLTDGENSSPNIDNKESLFYCNEAK 313
++++ +TD + + ++ +
Sbjct: 106 RFLVLVTDNDFHLAKDKTLGTRQNTSDGR 134
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 37.3 bits (86), Expect = 0.005
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 33/165 (20%)
Query: 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVV--RSGLVTFS 224
G ++ +DVS SMN SI + ++ + S +V FS
Sbjct: 367 TGKRFLLAIDVSASMN----------QRVLGSILNASVVAAAMCMLVARTEKDSHMVAFS 416
Query: 225 SKIVQ-TFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283
+++ + + + EK++ + GST + P + +A
Sbjct: 417 DEMLPCPITVNMLLHEVVEKMSDITMGSTDCALP-MLWAQKT-----------------N 458
Query: 284 KKY--IIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326
I TD E + ++ +L E A + + +
Sbjct: 459 TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTS 503
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for structural genomics, MCSG,
PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 35.1 bits (79), Expect = 0.025
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 17/130 (13%)
Query: 168 GLDMMMVLDVSLSMN-DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK 226
G+++++ LD+S SM P +L A R I ++D + + + G++ F+
Sbjct: 11 GVEVIIALDISNSMLAQDVQP--SRLEKAKRLISRLVDELDN-------DKVGMIVFAGD 61
Query: 227 IVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKY 286
P+ + + + + I +A + +
Sbjct: 62 AFTQLPITSDYISAKMFLESISPSLIS-------KQGTAIGEAINLATRSFTPQEGVGRA 114
Query: 287 IIFLTDGENS 296
II +TDGEN
Sbjct: 115 IIVITDGENH 124
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.6 bits (73), Expect = 0.13
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 57 LYTATKILNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQ----DI 105
L A+K++ QE KK +++ R + + + N + + F Q DI
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (68), Expect = 0.56
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 76 KNDFSYRIIKNIWQTDFRNELRENGFAQ---DINNIE-RSTSLSIIIDDQHKDYN---LS 128
K++F++RI+ N LR G + IE R + + + H + +
Sbjct: 588 KSEFAHRIM-------LTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGGDGMY 640
Query: 129 AVSRYEMPFIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHFGPG 188
+ S+ + +F W + S L + ++ I GL +S N+ G
Sbjct: 641 SESKLSLETLFNR--WHSESWANQLTVCGAI-IGWTRGTGL---------MSANNIIAEG 688
Query: 189 MDKLGVATRSIREM 202
++K+GV T S +EM
Sbjct: 689 IEKMGVRTFSQKEM 702
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 30.5 bits (68), Expect = 0.58
Identities = 20/167 (11%), Positives = 50/167 (29%), Gaps = 25/167 (14%)
Query: 172 MMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK----- 226
++ +DV +M++ A + I + + + + + LV F +
Sbjct: 11 VLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQ-RQVFAENKDEI--ALVLFGTDGTDNP 67
Query: 227 ---------IVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIA 277
I L + E I I + ++ + + + + ++H
Sbjct: 68 LSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADF-----LDALIVSMDVIQHET 122
Query: 278 KGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV 324
G K++I TD + + + K+ +
Sbjct: 123 IGKKFEKRHIEIFTDLSS---RFSKSQLDIIIHSLKKCDISLQFFLP 166
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing,
platelet integrin ALPHAIIBBETA3, polymorphism,
glycoprotein, cell adhesion, calcium; HET: NAG MAN;
2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B*
2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B*
1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Length = 461
Score = 30.3 bits (68), Expect = 0.63
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 159 VKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRS 218
+++ D +D+ ++D+S SM D + + + + + + +R
Sbjct: 102 IQVRQVEDYPVDIYYLMDLSYSMKDD----LWSI------QNLGTKLATQMRKLTSNLRI 151
Query: 219 GLVTFSSKIVQTF 231
G F K V +
Sbjct: 152 GFGAFVDKPVSPY 164
>3di4_A Uncharacterized protein DUF1989; YP_165628.1, protein of unknown
function (DUF1989), structural genomics; 1.60A
{Silicibacter pomeroyi dss-3}
Length = 286
Score = 28.3 bits (63), Expect = 2.9
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 314 RRGAIVYAIGVQAEA-ADQFLKNCASPDRFYSVQNSRKLHDAFLRIG 359
+ G V+ D L N + +R LH + G
Sbjct: 64 KAGQFFRISSVEGPQVGDLNLHNLHDLTERFFSGKTRALHGTHVTTG 110
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, structural genomics, PSI-2, protein
structure initiative; NMR {Agrobacterium tumefaciens}
SCOP: a.28.1.1
Length = 105
Score = 27.6 bits (61), Expect = 4.9
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 162 SSKSDIGLDMMMVLDVSLSMNDHFG---PGMDKLGVATRSIREMLDIIKSI 209
+ GL + + L + + F P + SI+ + D +K I
Sbjct: 48 ADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLI 98
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain,
alternative splicing, cell adhesion, disease mutation,
glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB:
3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 27.4 bits (60), Expect = 6.3
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 27/149 (18%)
Query: 159 VKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRS 218
+++ D +D+ ++D+S SM D L ++ ++ + + +R
Sbjct: 102 IQVRQVEDYPVDIYYLMDLSYSMKDD-------LWSIQNLGTKLATQMRKL---TSNLRI 151
Query: 219 GLVTFSSKIVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAK 278
G F K V + E + + T P + Y +H+
Sbjct: 152 GFGAFVDKPVSPY----MYISPPEALENPCYDMKTTCLPM--FGY----------KHVLT 195
Query: 279 GHDDYKKYIIFLTDGENSSPNIDNKESLF 307
D ++ ++ S N D E F
Sbjct: 196 LTDQVTRFNE-EVKKQSVSRNRDAPEGGF 223
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 26.8 bits (59), Expect = 9.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 264 NKIFDAKEKLEHIAKGHDDYKKYI 287
+ + K L+ I + HD +K+ I
Sbjct: 207 GEAKNKKYALDIIKETHDSWKQLI 230
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,099,660
Number of extensions: 140475
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 42
Length of query: 371
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 277
Effective length of database: 3,414,294
Effective search space: 945759438
Effective search space used: 945759438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)