HHsearch alignment for GI: 254780834 and conserved domain: COG0358
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=939.43 Aligned_cols=413 Identities=43% Similarity=0.689 Sum_probs=391.1
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 87888999998748888875412221015887777755753458888587879817897467136888878989989885
Q gi|254780834|r 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~ 81 (648)
T Consensus 1 ~i~~~~i~~l~~~~dIvdvI~~~v~Lkk~G~~-----y~~lCPFH~EktPSf~V~~~k~~yhCFGCg~~Gd~i~Fl~~~~ 75 (568)
T COG0358 1 RIPREFIDELRERIDIVDVIGEYVKLKKQGAN-----YTGLCPFHAEKTPSFTVSPEKGFYHCFGCGAGGDAIKFLMELL 75 (568)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHCEEEEECCCC-----CEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 99879999998618989876130145775888-----5103888777778748966887698416899851777899970
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCC
Q ss_conf 99979999999998188587768203677788999999999999999997326777578999985068853510124422
Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161 (648)
Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ 161 (648)
T Consensus 76 ~~sf~eav~~La~~~gi~~~~~~~---~~~~~~~~l~~~~~~~~~fy~~~L~-~~~~~a~~yL~~Rgls~~~i~~f~iG~ 151 (568)
T COG0358 76 GLSFDEAVLQLAGRAGIELPYEKG---KRIEKRQKLYDGKEEAAIFYQSSLD-PEGAAALKYLETRGLAAELIAHFRLGY 151 (568)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 997899999998872887775432---2117888888789999999998731-300788999987268888998865088
Q ss_pred CCCCCCHHHHHHHCCC-CCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCC
Q ss_conf 5677410345542059-973452320121003465410000167168889707785888501001465530010387676
Q gi|254780834|r 162 APDSRYSLREHLRQKG-FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 (648)
Q Consensus 162 ap~~~~~l~~~l~~~~-~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~ 240 (648)
T Consensus 152 ap~~-~~~~-~~~~k~~~~~~~l~~~Gl~~~~~-~-~~ydrFr~RImfPI~d~~g~vigFggR~l~-~~~~KYlNspet~ 226 (568)
T COG0358 152 APPN-DSLL-PFLAKKEYREEKLEDLGLLKRKE-G-KIYDRFRNRIMFPIRDLRGDVIGFGGRVLG-DDKPKYLNSPETE 226 (568)
T ss_pred CCCC-CHHH-HHHHCCCCCHHHHHHCCCHHHCC-C-CHHHHHHCHHEEEEECCCCCCCCCCCEECC-CCCCCCCCCCCCC
T ss_conf 9874-3044-54421342477898655134157-7-337888442327510799984240212436-7775334788873
Q ss_pred CCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEE
Q ss_conf 53521011081788886433100002356787089971438899987435542113432136626789885126818996
Q gi|254780834|r 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 (648)
Q Consensus 241 if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~ 320 (648)
T Consensus 227 if~Kg~~Lyg~~~a~~~~~~----------~~~iivVEGymDViaL~~aGi~naVA~lGTalt~ehi~~L~r~~~~vil~ 296 (568)
T COG0358 227 LFKKGEELYGLDPARKKIAK----------ADQIIVVEGYMDVIALHKAGIKNAVASLGTALTEEHIKLLSRGKKKVILC 296 (568)
T ss_pred CCCCCHHCCCCCHHHHHCCC----------CCEEEEEECHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 65677430585455563056----------88399994189999999719752786587679999999998469819999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCCHH
Q ss_conf 178866225777888888777536973067525788888899720366889988641-4992799999998530233145
Q gi|254780834|r 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPD 399 (648)
Q Consensus 321 fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~-A~~l~dFl~~~l~~~~dl~spe 399 (648)
T Consensus 297 fDgD~AG~~Aa~ral~~~~~~~~~~--v~v~~~P~GkDpDel~~k~g~~al~~~l~~~~~~~~~~~~~~~~~~-~~~~-~ 372 (568)
T COG0358 297 FDGDRAGRKAAKRALQLVLPLDFVG--VFVILLPDGKDPDELIRKEGAEALRKKLPNERLPLIEFLIEYLIPS-NLDT-E 372 (568)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCH-H
T ss_conf 6896789999999998543315664--4887478999868999873179999875652456899999861453-3212-7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999885417998999999999999988765776776
Q gi|254780834|r 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 (648)
Q Consensus 400 ~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~~~~~~~~ 442 (648)
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 415 (568)
T COG0358 373 GKARLVEEAVPLIKVIPDEVLRDYYLQKLAELLGISDDALLQL 415 (568)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 7899999976787602765779999999998737546778888