HHsearch alignment for GI: 254780834 and conserved domain: COG1658

>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].

Probab=96.87  E-value=0.0019  Score=51.40  Aligned_cols=63  Identities=29%  Similarity=0.312  Sum_probs=57.1

Q ss_pred             CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCC-HHHHHHHHH--CCCEEEEEECCCCCCHHHHHH
Q ss_conf             870899714388999874355421134321366-267898851--268189961788662257778
Q gi|254780834|r  271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT-EYQLRLLWK--LSPRIVLCFDGDDPGLRAAYK  333 (648)
Q Consensus       271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt-~~~~~~l~r--~~~~vvl~fDgD~AG~kAa~R  333 (648)
T Consensus         9 ~~~vIVVEGK~D~~~l~~~~~~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D~~Ge~Irk~   74 (127)
T COG1658           9 LKEVIVVEGKDDTASLKRLGDAGVIITNGSAINSLETIELIKKAQKYKGVIILTDPDRKGERIRKK   74 (127)
T ss_pred             CCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf             496699967767999998546863897586542788999999864258779986898562899999